|
Name |
Accession |
Description |
Interval |
E-value |
| DadA |
COG0665 |
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; |
1-364 |
2.06e-103 |
|
Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism];
Pssm-ID: 440429 [Multi-domain] Cd Length: 364 Bit Score: 309.14 E-value: 2.06e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 1 MHIAIIGAGISGLMSALELVEQGCTISIFDQQQAGQAASWAGGGILSPMYPWRYVHAVNQLAQFGKASYQAWNQKlypiT 80
Cdd:COG0665 3 ADVVVIGGGIAGLSTAYHLARRGLDVTVLERGRPGSGASGRNAGQLRPGLAALADRALVRLAREALDLWRELAAE----L 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 81 GIDFEIHDTGMLIF--DEEDFDVGLSYAEQHQEPMQRCEYLQRDALEQVNPHI-SGQFQEAIYFPELSNIRNPRVLQSLI 157
Cdd:COG0665 79 GIDCDFRRTGVLYLarTEAELAALRAEAEALRALGLPVELLDAAELREREPGLgSPDYAGGLYDPDDGHVDPAKLVRALA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 158 RYLKQHpNVEFFEHTPVKKLIQQGDAIQVLQTEDGRkHTADHFVITSGAWSHYWNSQLQLEIPVEPVQGQMLLFKTPAHW 237
Cdd:COG0665 159 RAARAA-GVRIREGTPVTGLEREGGRVTGVRTERGT-VRADAVVLAAGAWSARLLPMLGLRLPLRPVRGYVLVTEPLPDL 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 238 LP-TMCMNRVMYLIPRMDGHIVCGSSMAHRGFDTSTDETTQHNILEACLEMVPELADFPIVHRWAGLRPSSPNGVPYIGK 316
Cdd:COG0665 237 PLrPVLDDTGVYLRPTADGRLLVGGTAEPAGFDRAPTPERLEALLRRLRRLFPALADAEIVRAWAGLRPMTPDGLPIIGR 316
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 446468830 317 MPEMDNLWANFGHFRNGLCMGAGSAQLLRQLMLGQPTLVDAKAYSPER 364
Cdd:COG0665 317 LPGAPGLYVATGHGGHGVTLAPAAGRLLADLILGGEPPLDLAPFSPDR 364
|
|
| thiamin_ThiO |
TIGR02352 |
glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine ... |
17-351 |
8.41e-69 |
|
glycine oxidase ThiO; This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]
Pssm-ID: 274092 [Multi-domain] Cd Length: 337 Bit Score: 219.54 E-value: 8.41e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 17 LELVEQGCTISIFDQQQAGQAASWAGGGILSPMYPWRYvhAVNQLAQFGKAS---YQAWNQKLYPITGIDFEIHDTGMLI 93
Cdd:TIGR02352 1 WELAKRGHSVTLFDRDPMGGGASWAAAGMLAPHAECEY--AEDPLFDLALESlrlYPEWLEALKELTGLDTGYHQCGTLV 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 94 --FDEEDFDVGLSYAEQHQEPMQRCEYLQRDALEQVNPHISGQFQEAIYFPELSNIRNPRVLQSLIRYLkQHPNVEFFEH 171
Cdd:TIGR02352 79 vaFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPYLSGGIRGAVFYPDDAHVDPRALLKALEKAL-EKLGVEIIEH 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 172 TPVKKLIQQGDAIQVLQTEDGrKHTADHFVITSGAWShywnSQLqLEIPVEPVQGQMLLFKTPAHWLPTMCMNRVM---- 247
Cdd:TIGR02352 158 TEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWA----GEL-LPLPLRPVRGQPLRLEAPAVPLLNRPLRAVVygrr 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 248 -YLIPRMDGHIVCGSSMAHRGFDTSTDETTQHNILEACLEMVPELADFPIVHRWAGLRPSSPNGVPYIGKMPEMDNLWAN 326
Cdd:TIGR02352 232 vYIVPRRDGRLVVGATMEESGFDTTPTLGGIKELLRDAYTILPALKEARLLETWAGLRPGTPDNLPYIGEHPEDRRLLIA 311
|
330 340
....*....|....*....|....*
gi 446468830 327 FGHFRNGLCMGAGSAQLLRQLMLGQ 351
Cdd:TIGR02352 312 TGHYRNGILLAPATAEVIADLILGK 336
|
|
| DAO |
pfam01266 |
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: ... |
2-347 |
2.65e-65 |
|
FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Pssm-ID: 426168 [Multi-domain] Cd Length: 339 Bit Score: 210.72 E-value: 2.65e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 2 HIAIIGAGISGLMSALELVEQGCTISIFDQQ-QAGQAASWAGGGILspmYPWRYVHAVNQLAQFGKASYQAWnQKLYPIT 80
Cdd:pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGdDPGSGASGRNAGLI---HPGLRYLEPSELARLALEALDLW-EELEEEL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 81 GIDFEIHDTGML-IFDEEDFDVGLSYAEQHQEPMQRCEYLQRDALEQVNPHISGqFQEAIYFPELSNIRNPRVLQSLIRY 159
Cdd:pfam01266 77 GIDCGFRRCGVLvLARDEEEEALEKLLAALRRLGVPAELLDAEELRELEPLLPG-LRGGLFYPDGGHVDPARLLRALARA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 160 LKQHpNVEFFEHTPVKKLIQQGDAIQVLQTEdgrkhTADHFVITSGAWSHYWNsQLQLEIPVEPVQGQMLLFKTPAHWLP 239
Cdd:pfam01266 156 AEAL-GVRIIEGTEVTGIEEEGGVWGVVTTG-----EADAVVNAAGAWADLLA-LPGLRLPVRPVRGQVLVLEPLPEALL 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 240 TMCMN------RVMYLIPRMDGHIVCGSSMAHRGFDTST-DETTQHNILEACLEMVPELADfpIVHRWAGLRPsSPNGVP 312
Cdd:pfam01266 229 ILPVPitvdpgRGVYLRPRADGRLLLGGTDEEDGFDDPTpDPEEIEELLEAARRLFPALAD--IERAWAGLRP-LPDGLP 305
|
330 340 350
....*....|....*....|....*....|....*
gi 446468830 313 YIGKmPEMDNLWANFGHFRNGLCMGAGSAQLLRQL 347
Cdd:pfam01266 306 IIGR-PGSPGLYLATGHGGHGLTLAPGIGKLLAEL 339
|
|
| PRK00711 |
PRK00711 |
D-amino acid dehydrogenase; |
1-364 |
2.17e-30 |
|
D-amino acid dehydrogenase;
Pssm-ID: 234819 [Multi-domain] Cd Length: 416 Bit Score: 119.90 E-value: 2.17e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 1 MHIAIIGAGISGLMSALELVEQGCTISIFDQQ----------QAGQ-----AASWAGGGIL-----------SP------ 48
Cdd:PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQpgpaletsfaNAGQispgyAAPWAAPGVPlkaikwlfqrhAPlairpd 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 49 ----MYPW-----------RYvhAVNQ-----LAQFGKASYQAWNQKlypiTGIDFEIHDTGMLIF--DEEDFDvglsyA 106
Cdd:PRK00711 81 gdpfQLRWmwqmlrnctasRY--AVNKsrmvrLAEYSRDCLKALRAE----TGIQYEGRQGGTLQLfrTQQQLD-----A 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 107 EQHQEPMQR---CEY--LQRDALEQVNP---HISGQFQEAIYFP--ELSNIRnpRVLQSLIRYLKQhPNVEFFEHTPVKK 176
Cdd:PRK00711 150 AAKDIAVLEeagVPYelLDRDELAAVEPalaGVRHKLVGGLRLPndETGDCQ--LFTQRLAAMAEQ-LGVKFRFNTPVDG 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 177 LIQQGDAIQVLQTEDGRKhTADHFVITSGAWSHYWNSQLQLEIPVEPVQGQML-LFKTPAHWLPTMCMNRVMY--LIPRM 253
Cdd:PRK00711 227 LLVEGGRITGVQTGGGVI-TADAYVVALGSYSTALLKPLGVDIPVYPLKGYSLtVPITDEDRAPVSTVLDETYkiAITRF 305
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 254 DGHI-VCGssMAH-RGFDTSTDETTQhnileACLEMV-----PELADFPIVHRWAGLRPSSPNGVPYIGKMPeMDNLWAN 326
Cdd:PRK00711 306 DDRIrVGG--MAEiVGFDLRLDPARR-----ETLEMVvrdlfPGGGDLSQATFWTGLRPMTPDGTPIVGATR-YKNLWLN 377
|
410 420 430
....*....|....*....|....*....|....*...
gi 446468830 327 FGHFRNGLCMGAGSAQLLRQLMLGQPTLVDAKAYSPER 364
Cdd:PRK00711 378 TGHGTLGWTMACGSGQLLADLISGRKPAIDADDLSVAR 415
|
|
| LhgO |
COG0579 |
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism]; |
3-305 |
1.96e-15 |
|
L-2-hydroxyglutarate oxidase LhgO [Carbohydrate transport and metabolism];
Pssm-ID: 440344 [Multi-domain] Cd Length: 418 Bit Score: 77.11 E-value: 1.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 3 IAIIGAGISGLMSALELVE-QGCTISIFDQQ-QAGQAASWAGGGIlspmypwryVHA-VN--------QLAQFGKASYQA 71
Cdd:COG0579 7 VVIIGAGIVGLALARELSRyEDLKVLVLEKEdDVAQESSGNNSGV---------IHAgLYytpgslkaRLCVEGNELFYE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 72 WNQKLypitgiDFEIHDTGMLIF--DEEDFDVGLSYAEQ-HQEPMQRCEYLQRDALEQVNPHISGQFQEAIYFPELSNIr 148
Cdd:COG0579 78 LCREL------GIPFKRCGKLVVatGEEEVAFLEKLYERgKANGVPGLEILDREELRELEPLLSDEGVAALYSPSTGIV- 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 149 NPR-VLQSLIRYLKQHpNVEFFEHTPVKKLIQQGDAIQVlqTEDGRKHTADHFVITSGAWSHYWNSQLQLEIPVE--PVQ 225
Cdd:COG0579 151 DPGaLTRALAENAEAN-GVELLLNTEVTGIEREGDGWEV--TTNGGTIRARFVINAAGLYADRLAQMAGIGKDFGifPVK 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 226 GQMLLFKTPAHWLptmcmNRVMY-------------LIPRMDGHIVCG-------------------------SSMAHRG 267
Cdd:COG0579 228 GEYLVLDKPAELV-----NAKVYpvpdpgapflgvhLTRTIDGNLLFGpnavfvpkkedslldlfeslrfpnfWPMLAKN 302
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 446468830 268 FDT----STDETTQHNILEACLEMVPELADFPIVHRWAGLRP 305
Cdd:COG0579 303 LLTkyleSVTSLSKEAFLEALRKYVPELPDEDLIPAFAGIRA 344
|
|
| mnmC |
PRK01747 |
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent ... |
2-352 |
2.98e-15 |
|
bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC;
Pssm-ID: 234978 [Multi-domain] Cd Length: 662 Bit Score: 77.19 E-value: 2.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 2 HIAIIGAGISGLMSALELVEQGCTISIFDQ-QQAGQAASWAGGGILSP-----------MYPWRYVHAVNQLAQFGKAsy 69
Cdd:PRK01747 262 DAAIIGGGIAGAALALALARRGWQVTLYEAdEAPAQGASGNRQGALYPllskddnalsrFFRAAFLFARRFYDALPAA-- 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 70 qawnqklypitGIDFEIHDTGM--LIFDEEDFdVGLSYAEQHQEPMQRCEYLQRDALEQVN----PHisgqfqEAIYFPE 143
Cdd:PRK01747 340 -----------GVAFDHDWCGVlqLAWDEKSA-EKIAKMLALGLPAELARALDAEEAEELAglpvPC------GGIFYPQ 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 144 LSNIRNPRVLQSLIRYLKQHPNVEFfeHTPVKKLIQQGDAIQvLQTEDGRKHTADHFVITSGAWSHYWnSQLQlEIPVEP 223
Cdd:PRK01747 402 GGWLCPAELCRALLALAGQQLTIHF--GHEVARLEREDDGWQ-LDFAGGTLASAPVVVLANGHDAARF-AQTA-HLPLYS 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 224 VQGQMLLFKTPAHwLPTMCmnRVM----YLIPR-MDGHIVCGSSMaHRGfDTSTDETT---QHNI--LEACLEMVPELAD 293
Cdd:PRK01747 477 VRGQVSHLPTTPA-LSALK--QVLcydgYLTPQpANGTHCIGASY-DRD-DTDTAFREadhQENLerLAECLPQALWAKE 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 294 FPI--VHRWAGLRPSSPNGVPYIGKMPE----------------------MDNLWANFGHFRNGLCMGAGSAQLLRQLML 349
Cdd:PRK01747 552 VDVsaLQGRVGFRCASRDRLPMVGNVPDeaatlaeyaalanqqpardaprLPGLYVAGALGSRGLCSAPLGAELLASQIE 631
|
...
gi 446468830 350 GQP 352
Cdd:PRK01747 632 GEP 634
|
|
| UbiH |
COG0654 |
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme ... |
1-208 |
1.23e-08 |
|
2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme transport and metabolism, Energy production and conversion]; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 440419 [Multi-domain] Cd Length: 326 Bit Score: 55.71 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 1 MHIAIIGAGISGLMSALELVEQGCTISIFDQQQAGQAASWAGGgiLSPmypwryvHAVNQLAQFGkaSYQAWNQKLYPIT 80
Cdd:COG0654 4 TDVLIVGGGPAGLALALALARAGIRVTVVERAPPPRPDGRGIA--LSP-------RSLELLRRLG--LWDRLLARGAPIR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 81 GIDFEIHDTGMLIFDEEDFDVGlsyaeqhqepmqrceylqrdaleqvnphisgqfqeaiyFPELSNIRNPRVLQSLIRYL 160
Cdd:COG0654 73 GIRVRDGSDGRVLARFDAAETG--------------------------------------LPAGLVVPRADLERALLEAA 114
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 446468830 161 KQHpNVEFFEHTPVKKLIQQGDAIQVlQTEDGRKHTADHFVITSGAWS 208
Cdd:COG0654 115 RAL-GVELRFGTEVTGLEQDADGVTV-TLADGRTLRADLVVGADGARS 160
|
|
| PRK07233 |
PRK07233 |
hypothetical protein; Provisional |
2-56 |
1.20e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 235977 [Multi-domain] Cd Length: 434 Bit Score: 49.89 E-value: 1.20e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 446468830 2 HIAIIGAGISGLMSALELVEQGCTISIF--DQQQAGQAASWAGGGilspmYPW-RYVH 56
Cdd:PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFeaDDQLGGLAASFEFGG-----LPIeRFYH 53
|
|
| PRK12409 |
PRK12409 |
D-amino acid dehydrogenase small subunit; Provisional |
2-226 |
2.43e-06 |
|
D-amino acid dehydrogenase small subunit; Provisional
Pssm-ID: 237093 [Multi-domain] Cd Length: 410 Bit Score: 49.25 E-value: 2.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 2 HIAIIGAGISGLMSALELVEQGCTISIFDQQQ-AGQAASWAGGGILS------------------------------PMY 50
Cdd:PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHRyAAMETSFANGGQLSasnaevwnhwatvlkglkwmlrkdaplllnPKP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 51 PWryvHAVNQLAQF--GKASYQ-----------AWNQKLYPIT---GIDFEIHDTGMLIF--DEEDFDVGLSYAEQHQE- 111
Cdd:PRK12409 83 SW---HKYSWLAEFlaHIPNYRantietvrlaiAARKHLFDIAereGIDFDLERRGILHIyhDKAGFDHAKRVNALLAEg 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 112 PMQRCEyLQRDALEQVNPHISGQFQEAIYFPELSNIRNPRVLQSLIRYLKQHpNVEFFEHTPVKKLIQQGDAIQVLQTED 191
Cdd:PRK12409 160 GLERRA-VTPEEMRAIEPTLTGEYYGGYYTPSDSTGDIHKFTTGLAAACARL-GVQFRYGQEVTSIKTDGGGVVLTVQPS 237
|
250 260 270
....*....|....*....|....*....|....*....
gi 446468830 192 G----RKHTADHFVITSGAWSHYWNSQLQLEIPVEPVQG 226
Cdd:PRK12409 238 AehpsRTLEFDGVVVCAGVGSRALAAMLGDRVNVYPVKG 276
|
|
| HemY |
COG1232 |
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen ... |
1-46 |
6.95e-06 |
|
Protoporphyrinogen oxidase HemY/PPOX [Coenzyme transport and metabolism]; Protoporphyrinogen oxidase HemY/PPOX is part of the Pathway/BioSystem: Heme biosynthesis
Pssm-ID: 440845 [Multi-domain] Cd Length: 443 Bit Score: 47.52 E-value: 6.95e-06
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 446468830 1 MHIAIIGAGISGLMSALELVEQGCTISIFDQQQA--GQAASWAGGGIL 46
Cdd:COG1232 2 KRVAVIGGGIAGLTAAYRLAKAGHEVTVLEASDRvgGLIRTVEVDGFR 49
|
|
| COG3380 |
COG3380 |
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]; |
1-30 |
9.04e-06 |
|
Predicted NAD/FAD-dependent oxidoreductase [General function prediction only];
Pssm-ID: 442607 [Multi-domain] Cd Length: 331 Bit Score: 47.18 E-value: 9.04e-06
10 20 30
....*....|....*....|....*....|
gi 446468830 1 MHIAIIGAGISGLMSALELVEQGCTISIFD 30
Cdd:COG3380 4 PDIAIIGAGIAGLAAARALQDAGHEVTVFE 33
|
|
| NAD_binding_8 |
pfam13450 |
NAD(P)-binding Rossmann-like domain; |
5-60 |
1.10e-05 |
|
NAD(P)-binding Rossmann-like domain;
Pssm-ID: 433218 [Multi-domain] Cd Length: 67 Bit Score: 42.90 E-value: 1.10e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 446468830 5 IIGAGISGLMSALELVEQGCTISIFDQQQ--AGQAASWAGGGILSPmYPWRYVHAVNQ 60
Cdd:pfam13450 1 IVGAGLAGLVAAALLAKRGFRVLVLEKRDrlGGNAYSYRVPGYVFD-YGAHIFHGSDE 57
|
|
| FAD_binding_2 |
pfam00890 |
FAD binding domain; This family includes members that bind FAD. This family includes the ... |
2-209 |
1.19e-05 |
|
FAD binding domain; This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Pssm-ID: 395718 [Multi-domain] Cd Length: 398 Bit Score: 46.90 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 2 HIAIIGAGISGLMSALELVEQGCTISIFDQ-QQAGQAASWAGGGIL-----------SPMYPWRYvhAVNQLAQFGKASY 69
Cdd:pfam00890 1 DVLVIGGGLAGLAAALAAAEAGLKVAVVEKgQPFGGATAWSSGGIDalgnppqggidSPELHPTD--TLKGLDELADHPY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 70 qawnQKLYPITGIDfeihdtgMLIFDEEDfdvGLSYAEQHQEPmqrceYLQRDaLEQVNPHISGQFQEAIYFPELSNirN 149
Cdd:pfam00890 79 ----VEAFVEAAPE-------AVDWLEAL---GVPFSRTEDGH-----LDLRP-LGGLSATWRTPHDAADRRRGLGT--G 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446468830 150 PRVLQSLIRYLKQHPnVEFFEHTPVKKLIQQGDAI---QVLQTEDGRKHT--ADHFVI-TSGAWSH 209
Cdd:pfam00890 137 HALLARLLEGLRKAG-VDFQPRTAADDLIVEDGRVtgaVVENRRNGREVRirAIAAVLlATGGFGR 201
|
|
| soxA_mon |
TIGR01377 |
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of ... |
5-225 |
1.49e-05 |
|
sarcosine oxidase, monomeric form; Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]
Pssm-ID: 130444 [Multi-domain] Cd Length: 380 Bit Score: 46.36 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 5 IIGAGISGLMSALELVEQGCTISIFDQ--QQAGQAASWAGGGILSPMYPWRYvhavnqLAQFGKASYQAWNQklypitgI 82
Cdd:TIGR01377 5 VVGAGIMGCFAAYHLAKHGKKTLLLEQfdLPHSRGSSHGQSRIIRKAYPEDF------YTPMMLECYQLWAQ-------L 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 83 DFEIHDTgmLIFDEEDFDVGLSYAEQHQEPMQRC-------EYLQRDALEQVNPHISGQFQEAIYFPELSNIRNPRVLQS 155
Cdd:TIGR01377 72 EKEAGTK--LHRQTGLLLLGPKENQFLKTIQATLsrhglehELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALR 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 156 LIRYLKQHPNVEFFEHTPVKKLIQQGDAIQVLQTedGRKHTADHFVITSGAWSHYWNSQLQLEIPVEPVQ 225
Cdd:TIGR01377 150 ALQELAEAHGATVRDGTKVVEIEPTELLVTVKTT--KGSYQANKLVVTAGAWTSKLLSPLGIEIPLQPLR 217
|
|
| COG3349 |
COG3349 |
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function ... |
1-43 |
5.36e-05 |
|
Uncharacterized protein, contains NAD-binding domain and a Fe-S cluster [General function prediction only];
Pssm-ID: 442577 [Multi-domain] Cd Length: 445 Bit Score: 44.85 E-value: 5.36e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 446468830 1 MHIAIIGAGISGLMSALELVEQGCTISIFDqqqagqAASWAGG 43
Cdd:COG3349 4 PRVVVVGGGLAGLAAAVELAEAGFRVTLLE------ARPRLGG 40
|
|
| YobN |
COG1231 |
Monoamine oxidase [Amino acid transport and metabolism]; |
2-29 |
1.11e-04 |
|
Monoamine oxidase [Amino acid transport and metabolism];
Pssm-ID: 440844 [Multi-domain] Cd Length: 440 Bit Score: 43.76 E-value: 1.11e-04
10 20
....*....|....*....|....*...
gi 446468830 2 HIAIIGAGISGLMSALELVEQGCTISIF 29
Cdd:COG1231 9 DVVIVGAGLAGLAAARELRKAGLDVTVL 36
|
|
| PRK06753 |
PRK06753 |
hypothetical protein; Provisional |
1-45 |
1.19e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 168661 [Multi-domain] Cd Length: 373 Bit Score: 43.52 E-value: 1.19e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 446468830 1 MHIAIIGAGISGLMSALELVEQGCTISIFDQQQAGQAASwAGGGI 45
Cdd:PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVG-AGIGI 44
|
|
| Amino_oxidase |
pfam01593 |
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, ... |
10-207 |
1.86e-04 |
|
Flavin containing amine oxidoreductase; This family consists of various amine oxidases, including maze polyamine oxidase (PAO)and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Pssm-ID: 396255 [Multi-domain] Cd Length: 446 Bit Score: 43.25 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 10 ISGLMSALELVEQGCTISIFD-QQQAG-QAASW--------AGGGILSPMYP--WRYV---------------------- 55
Cdd:pfam01593 1 LAGLAAARELLRAGHDVTVLEaRDRVGgRIRTVrddgflieLGAMWFHGAQPplLALLkelgledrlvlpdpapfytvlf 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 56 --------------HAVNQLAQFGKasYQAWNQKLYPITGIDFEIHDTGMLiFDEEDFDVGLSYAEQHQEPMQR-CEYLQ 120
Cdd:pfam01593 81 aggrrypgdfrrvpAGWEGLLEFGR--LLSIPEKLRLGLAALASDALDEFD-LDDFSLAESLLFLGRRGPGDVEvWDRLI 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 121 RDALEQVNPHISGQFqeAIYFPELS----------------NIRNPRV-LQSLIRYL-KQHPNVEFFEHTPVKKLIQQGD 182
Cdd:pfam01593 158 DPELFAALPFASGAF--AGDPSELSaglalpllwallgeggSLLLPRGgLGALPDALaAQLLGGDVRLNTRVRSIDREGD 235
|
250 260
....*....|....*....|....*
gi 446468830 183 AIqVLQTEDGRKHTADHFVITSGAW 207
Cdd:pfam01593 236 GV-TVTLTDGEVIEADAVIVTVPLG 259
|
|
| PLN02487 |
PLN02487 |
zeta-carotene desaturase |
3-40 |
2.47e-04 |
|
zeta-carotene desaturase
Pssm-ID: 215268 [Multi-domain] Cd Length: 569 Bit Score: 42.87 E-value: 2.47e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 446468830 3 IAIIGAGISGLMSALELVEQGCTISIFDQQQ--AGQAASW 40
Cdd:PLN02487 78 VAIIGAGLAGMSTAVELLDQGHEVDIYESRPfiGGKVGSF 117
|
|
| YdhS |
COG4529 |
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only]; |
1-33 |
3.16e-04 |
|
Uncharacterized NAD(P)/FAD-binding protein YdhS [General function prediction only];
Pssm-ID: 443597 [Multi-domain] Cd Length: 466 Bit Score: 42.63 E-value: 3.16e-04
10 20 30
....*....|....*....|....*....|....*.
gi 446468830 1 MHIAIIGAGISGLMSALELVEQ---GCTISIFDQQQ 33
Cdd:COG4529 6 KRIAIIGGGASGTALAIHLLRRapePLRITLFEPRP 41
|
|
| COG3573 |
COG3573 |
Predicted oxidoreductase [General function prediction only]; |
5-45 |
1.43e-03 |
|
Predicted oxidoreductase [General function prediction only];
Pssm-ID: 442794 [Multi-domain] Cd Length: 551 Bit Score: 40.55 E-value: 1.43e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 446468830 5 IIGAGISGLMSALELVEQGCTISIFDQQQA----GQaASWAGGGI 45
Cdd:COG3573 10 VVGAGLAGLVAAAELADAGRRVLLLDQEPEanlgGQ-AFWSFGGL 53
|
|
| PRK05329 |
PRK05329 |
glycerol-3-phosphate dehydrogenase subunit GlpB; |
1-45 |
1.60e-03 |
|
glycerol-3-phosphate dehydrogenase subunit GlpB;
Pssm-ID: 235412 Cd Length: 422 Bit Score: 40.22 E-value: 1.60e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 446468830 1 MHIAIIGAGISGLMSALELVEQGCTISIfdqQQAGQAA-SWAGGGI 45
Cdd:PRK05329 3 FDVLVIGGGLAGLTAALAAAEAGKRVAL---VAKGQGAlHFSSGSI 45
|
|
| PRK11883 |
PRK11883 |
protoporphyrinogen oxidase; Reviewed |
1-45 |
1.66e-03 |
|
protoporphyrinogen oxidase; Reviewed
Pssm-ID: 237009 [Multi-domain] Cd Length: 451 Bit Score: 40.22 E-value: 1.66e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 446468830 1 MHIAIIGAGISGLMSALELVEQG--CTISIFDqqqagqAASWAGGGI 45
Cdd:PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGpdADITLLE------ASDRLGGKI 41
|
|
| PRK08163 |
PRK08163 |
3-hydroxybenzoate 6-monooxygenase; |
154-208 |
2.04e-03 |
|
3-hydroxybenzoate 6-monooxygenase;
Pssm-ID: 181262 [Multi-domain] Cd Length: 396 Bit Score: 40.02 E-value: 2.04e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 446468830 154 QSLIRYLKQHPNVEFFEHTPVKKLIQQGDAIQVlQTEDGRKHTADHFVITSGAWS 208
Cdd:PRK08163 113 LSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTV-FDQQGNRWTGDALIGCDGVKS 166
|
|
| PRK07208 |
PRK07208 |
hypothetical protein; Provisional |
2-31 |
3.08e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 235967 [Multi-domain] Cd Length: 479 Bit Score: 39.49 E-value: 3.08e-03
10 20 30
....*....|....*....|....*....|
gi 446468830 2 HIAIIGAGISGLMSALELVEQGCTISIFDQ 31
Cdd:PRK07208 6 SVVIIGAGPAGLTAAYELLKRGYPVTVLEA 35
|
|
| NadB |
COG0029 |
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the ... |
152-205 |
7.97e-03 |
|
Aspartate oxidase [Coenzyme transport and metabolism]; Aspartate oxidase is part of the Pathway/BioSystem: NAD biosynthesis
Pssm-ID: 439800 [Multi-domain] Cd Length: 521 Bit Score: 38.16 E-value: 7.97e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446468830 152 VLQSLIRYLKQHPNVEFFEHTPVKKLIQQGDA----IQVLQTEDGRKHT--ADHFVITSG 205
Cdd:COG0029 132 IERALLEAVRAHPNITVLENHFAVDLITDADGrcvgAYVLDEKTGEVETirAKAVVLATG 191
|
|
| PRK12834 |
PRK12834 |
putative FAD-binding dehydrogenase; Reviewed |
3-49 |
8.25e-03 |
|
putative FAD-binding dehydrogenase; Reviewed
Pssm-ID: 183782 [Multi-domain] Cd Length: 549 Bit Score: 37.96 E-value: 8.25e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 446468830 3 IAIIGAGISGLMSALELVEQGCTISIFDQQQA----GQaASWAGGGIL---SPM 49
Cdd:PRK12834 7 VIVVGAGLAGLVAAAELADAGKRVLLLDQENEanlgGQ-AFWSLGGLFlvdSPE 59
|
|
| NAD_binding_9 |
pfam13454 |
FAD-NAD(P)-binding; |
4-42 |
8.76e-03 |
|
FAD-NAD(P)-binding;
Pssm-ID: 433222 [Multi-domain] Cd Length: 155 Bit Score: 36.49 E-value: 8.76e-03
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 446468830 4 AIIGAGISGLMSALELVEQGC----TISIFDQQQAGQAASWAG 42
Cdd:pfam13454 1 AIVGGGPSGLALLERLLARAPkrplEITLFDPSPPGAGGVYRT 43
|
|
| SdhA |
COG1053 |
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and ... |
5-45 |
9.27e-03 |
|
Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit is part of the Pathway/BioSystem: TCA cycle
Pssm-ID: 440673 [Multi-domain] Cd Length: 443 Bit Score: 37.89 E-value: 9.27e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 446468830 5 IIGAGISGLMSALELVEQGCTISIFDQQQAGQAAS-WAGGGI 45
Cdd:COG1053 8 VVGSGGAGLRAALEAAEAGLKVLVLEKVPPRGGHTaAAQGGI 49
|
|
| |
