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Conserved domains on  [gi|446470677|ref|WP_000548531|]
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MULTISPECIES: DUF1382 family protein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1382 super family cl06249
Protein of unknown function (DUF1382); This family consists of several hypothetical ...
 1-60 3.02e-24

Protein of unknown function (DUF1382); This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


The actual alignment was detected with superfamily member pfam07131:

Pssm-ID: 429309  Cd Length: 60  Bit Score: 85.31  E-value: 3.02e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446470677   1 MHKASPVELRTSIEMAHSLAQIGVRFVPIPVETDEEFHTLAASLSQKLEMMVAKAEADER 60
Cdd:pfam07131  1 MHKASSVELRAAIEAAHALAQAGILFVPIPIESDEEAHDLAAQAMQALEMLEAAAEAAEG 60
 
Name Accession Description Interval E-value
DUF1382 pfam07131
Protein of unknown function (DUF1382); This family consists of several hypothetical ...
 1-60 3.02e-24

Protein of unknown function (DUF1382); This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 429309  Cd Length: 60  Bit Score: 85.31  E-value: 3.02e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446470677   1 MHKASPVELRTSIEMAHSLAQIGVRFVPIPVETDEEFHTLAASLSQKLEMMVAKAEADER 60
Cdd:pfam07131  1 MHKASSVELRAAIEAAHALAQAGILFVPIPIESDEEAHDLAAQAMQALEMLEAAAEAAEG 60
 
Name Accession Description Interval E-value
DUF1382 pfam07131
Protein of unknown function (DUF1382); This family consists of several hypothetical ...
 1-60 3.02e-24

Protein of unknown function (DUF1382); This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.


Pssm-ID: 429309  Cd Length: 60  Bit Score: 85.31  E-value: 3.02e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446470677   1 MHKASPVELRTSIEMAHSLAQIGVRFVPIPVETDEEFHTLAASLSQKLEMMVAKAEADER 60
Cdd:pfam07131  1 MHKASSVELRAAIEAAHALAQAGILFVPIPIESDEEAHDLAAQAMQALEMLEAAAEAAEG 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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