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Conserved domains on  [gi|446480356|ref|WP_000558210|]
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MULTISPECIES: DUF4156 domain-containing protein [Salmonella]

Protein Classification

DUF4156 domain-containing protein( domain architecture ID 10616256)

DUF4156 domain-containing protein similar to Escherichia coli protein YjeL might be a lipoprotein or membrane protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4156 pfam13698
Domain of unknown function (DUF4156); The function of this family is unknown but members are ...
 23-115 3.02e-37

Domain of unknown function (DUF4156); The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.


:

Pssm-ID: 433411  Cd Length: 88  Bit Score: 121.30  E-value: 3.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446480356   23 NELTAAGQNVRFVEDKPGAECQLIGTATGKQSNWFSGQHGEEGGSMRGAANDLRNQAAAMGGNVLYGVSSPsqgmlSSFV 102
Cdd:pfam13698   1 VELTPEGEAVKIVDSQPGAGCQLLGTVTGSQGNWFTGIYTSNDNLMRGALNDLRNEAAALGGNTIVLVTSP-----PFET 75

                          90
                  ....*....|...
gi 446480356  103 PTASEMNGQVYKC 115
Cdd:pfam13698  76 PTDGTMIGNAYRC 88
 
Name Accession Description Interval E-value
DUF4156 pfam13698
Domain of unknown function (DUF4156); The function of this family is unknown but members are ...
 23-115 3.02e-37

Domain of unknown function (DUF4156); The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.


Pssm-ID: 433411  Cd Length: 88  Bit Score: 121.30  E-value: 3.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446480356   23 NELTAAGQNVRFVEDKPGAECQLIGTATGKQSNWFSGQHGEEGGSMRGAANDLRNQAAAMGGNVLYGVSSPsqgmlSSFV 102
Cdd:pfam13698   1 VELTPEGEAVKIVDSQPGAGCQLLGTVTGSQGNWFTGIYTSNDNLMRGALNDLRNEAAALGGNTIVLVTSP-----PFET 75

                          90
                  ....*....|...
gi 446480356  103 PTASEMNGQVYKC 115
Cdd:pfam13698  76 PTDGTMIGNAYRC 88
 
Name Accession Description Interval E-value
DUF4156 pfam13698
Domain of unknown function (DUF4156); The function of this family is unknown but members are ...
 23-115 3.02e-37

Domain of unknown function (DUF4156); The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.


Pssm-ID: 433411  Cd Length: 88  Bit Score: 121.30  E-value: 3.02e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446480356   23 NELTAAGQNVRFVEDKPGAECQLIGTATGKQSNWFSGQHGEEGGSMRGAANDLRNQAAAMGGNVLYGVSSPsqgmlSSFV 102
Cdd:pfam13698   1 VELTPEGEAVKIVDSQPGAGCQLLGTVTGSQGNWFTGIYTSNDNLMRGALNDLRNEAAALGGNTIVLVTSP-----PFET 75

                          90
                  ....*....|...
gi 446480356  103 PTASEMNGQVYKC 115
Cdd:pfam13698  76 PTDGTMIGNAYRC 88
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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