NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446481910|ref|WP_000559764|]
View 

MULTISPECIES: YfcL family protein [Gammaproteobacteria]

Protein Classification

YfcL family protein( domain architecture ID 10556271)

YfcL family protein similar to Escherichia coli protein YfcL

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YfcL pfam08891
YfcL protein; This family of proteins are functionally uncharacterized. THey are related to ...
 3-87 2.43e-36

YfcL protein; This family of proteins are functionally uncharacterized. THey are related to the short YfcL protein from E. coli.


:

Pssm-ID: 430291  Cd Length: 83  Bit Score: 117.70  E-value: 2.43e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446481910   3 AEFESRILALIDGMVDHASDDELFASGYLRGHLTLAIAELESGDDHSAQAVHTTVSQSLEKAigAGELSPRDQALVTDMW 82
Cdd:pfam08891  1 AEFEERLLALIDDMVEHASDDELFAGGYLRGHFALAVAELEVEGETSLEALKERVEESLEKA--RGELSPADQALVAALW 78


                 ....*
gi 446481910  83 ENLFQ 87
Cdd:pfam08891 79 QELAQ 83
 
Name Accession Description Interval E-value
YfcL pfam08891
YfcL protein; This family of proteins are functionally uncharacterized. THey are related to ...
 3-87 2.43e-36

YfcL protein; This family of proteins are functionally uncharacterized. THey are related to the short YfcL protein from E. coli.


Pssm-ID: 430291  Cd Length: 83  Bit Score: 117.70  E-value: 2.43e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446481910   3 AEFESRILALIDGMVDHASDDELFASGYLRGHLTLAIAELESGDDHSAQAVHTTVSQSLEKAigAGELSPRDQALVTDMW 82
Cdd:pfam08891  1 AEFEERLLALIDDMVEHASDDELFAGGYLRGHFALAVAELEVEGETSLEALKERVEESLEKA--RGELSPADQALVAALW 78


                 ....*
gi 446481910  83 ENLFQ 87
Cdd:pfam08891 79 QELAQ 83
 
Name Accession Description Interval E-value
YfcL pfam08891
YfcL protein; This family of proteins are functionally uncharacterized. THey are related to ...
 3-87 2.43e-36

YfcL protein; This family of proteins are functionally uncharacterized. THey are related to the short YfcL protein from E. coli.


Pssm-ID: 430291  Cd Length: 83  Bit Score: 117.70  E-value: 2.43e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446481910   3 AEFESRILALIDGMVDHASDDELFASGYLRGHLTLAIAELESGDDHSAQAVHTTVSQSLEKAigAGELSPRDQALVTDMW 82
Cdd:pfam08891  1 AEFEERLLALIDDMVEHASDDELFAGGYLRGHFALAVAELEVEGETSLEALKERVEESLEKA--RGELSPADQALVAALW 78


                 ....*
gi 446481910  83 ENLFQ 87
Cdd:pfam08891 79 QELAQ 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH