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Conserved domains on  [gi|446498220|ref|WP_000576074|]
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YhcH/YjgK/YiaL family protein [Escherichia coli]

Protein Classification

YhcH/YjgK/YiaL family protein( domain architecture ID 10015409)

YhcH/YjgK/YiaL family protein similar to Escherichia coli toxin-antitoxin biofilm protein TabA

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TIGR00022 TIGR00022
YhcH/YjgK/YiaL family protein; This family consists of conserved hypothetical proteins, about ...
1-141 2.32e-76

YhcH/YjgK/YiaL family protein; This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK. [Unknown function, General]


:

Pssm-ID: 129133  Cd Length: 142  Bit Score: 223.49  E-value: 2.32e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446498220    1 MIFGHIAQPNPCR-LPAAIEKALDFLRATDFNALEPGVVEIDGKNIYAQIIDLTTREAVENRPEVHRRYIDIQFLAWGEE 79
Cdd:TIGR00022   1 MIIGSITNLNPKVgLPPAIAEAIDFLNATDLNALEPGRHDIDGDRIFMNVMEPETAEPVSKKAELHHRYLDIQLLLRGEE 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446498220   80 KIGIAIDTGNNKVSESLLEQRDIIFYHDSEHESFIEMIPGSYAIFFPQDVHRPGCIMQTASE 141
Cdd:TIGR00022  81 NIEVGTTPPNLSVYEDYLEEDDIQLCADIDDEQTVILKPGMFAVFYPGEPHKPGCVVNGPEE 142
 
Name Accession Description Interval E-value
TIGR00022 TIGR00022
YhcH/YjgK/YiaL family protein; This family consists of conserved hypothetical proteins, about ...
1-141 2.32e-76

YhcH/YjgK/YiaL family protein; This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK. [Unknown function, General]


Pssm-ID: 129133  Cd Length: 142  Bit Score: 223.49  E-value: 2.32e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446498220    1 MIFGHIAQPNPCR-LPAAIEKALDFLRATDFNALEPGVVEIDGKNIYAQIIDLTTREAVENRPEVHRRYIDIQFLAWGEE 79
Cdd:TIGR00022   1 MIIGSITNLNPKVgLPPAIAEAIDFLNATDLNALEPGRHDIDGDRIFMNVMEPETAEPVSKKAELHHRYLDIQLLLRGEE 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446498220   80 KIGIAIDTGNNKVSESLLEQRDIIFYHDSEHESFIEMIPGSYAIFFPQDVHRPGCIMQTASE 141
Cdd:TIGR00022  81 NIEVGTTPPNLSVYEDYLEEDDIQLCADIDDEQTVILKPGMFAVFYPGEPHKPGCVVNGPEE 142
EbgC COG2731
Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism];
1-138 2.93e-61

Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism];


Pssm-ID: 442037  Cd Length: 138  Bit Score: 185.07  E-value: 2.93e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446498220   1 MIFGHIAQP-NPCRLPAAIEKALDFLRATDFNALEPGVVEIDGKNIYAQIIDLTTREAVENRPEVHRRYIDIQFLAWGEE 79
Cdd:COG2731    1 MIIGNLSNLdRYAGLPPALKKALEFLKETDLAALPPGRYEIDGDNIFANVQEYETKPAEERKAEAHRKYIDIQILLSGEE 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446498220  80 KIGIAiDTGNNKVSESLLEQRDIIFYHDSEHESFIEMIPGSYAIFFPQDVHRPGCIMQT 138
Cdd:COG2731   81 RIGYA-PLENLEVSEPYDEEKDIQFYEDIEPESFLTLQPGDFAIFFPEDAHKPGCAVGE 138
DUF386 pfam04074
YhcH/YjgK/YiaL; This family consists of bacterial proteins. YjgK (TabA) influences biofilm ...
1-150 5.37e-59

YhcH/YjgK/YiaL; This family consists of bacterial proteins. YjgK (TabA) influences biofilm formation by toxin-antitoxin systems. Another member of this family, YhcH, is a possible sugar isomerase of sialic acid catabolism.


Pssm-ID: 461158  Cd Length: 148  Bit Score: 179.70  E-value: 5.37e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446498220    1 MIFGHIAQPNPCrLPAAIEKALDFLRATDFNALEPGVVEIDGKNIYAQIIDLTTREAVENRPEVHRRYIDIQFLAWGEEK 80
Cdd:pfam04074   1 MIIDNLENLERY-LHPNLKKAFEYLKETDLENLPLGKYEIDGDDLFANVQEYETKPAEEAKFESHRKYIDIQYVLEGEET 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446498220   81 IGIAIDTGNNKVSESLLEQRDIIFYHDSEHESFIEMIPGSYAIFFPQDVHRPGCiMQTASEIRKIVVKVA 150
Cdd:pfam04074  80 IGWAPLADLETLTEPYDEEKDIAFYADGEPETFVTLKPGDFAIFFPEDAHRPGI-GGGPEKVRKVVVKVR 148
acetylneur_anom NF040884
N-acetylneuraminate anomerase;
1-149 8.04e-40

N-acetylneuraminate anomerase;


Pssm-ID: 468820  Cd Length: 155  Bit Score: 131.52  E-value: 8.04e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446498220   1 MIFGHIAQPNPCR-LPAAIEKALDFLRATDFNALEPGVVEIDGKNIYAQIIDLTTREAVENRPEVHRRYIDIQFLAWGEE 79
Cdd:NF040884   1 MILGDLSQPESASgLPPVLQDALTLALAADLQELAPGRYEIDGDDIFMNVMEFETQPAESKKAELHRQYIDIQLLLSGEE 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446498220  80 KIGIAIdTGNNKVSESLLEQRDIIFYHDSEHESFIEMIPGSYAIFFPQDVHRPGCIMQTAS-EIRKIVVKV 149
Cdd:NF040884  81 RIDYGL-AGSARECEEYHEEDDYQLCDTIENEQTLTLTPGMFAVFMPGEPHKPGCVVGTPPgEIKKVVVKV 150
 
Name Accession Description Interval E-value
TIGR00022 TIGR00022
YhcH/YjgK/YiaL family protein; This family consists of conserved hypothetical proteins, about ...
1-141 2.32e-76

YhcH/YjgK/YiaL family protein; This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK. [Unknown function, General]


Pssm-ID: 129133  Cd Length: 142  Bit Score: 223.49  E-value: 2.32e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446498220    1 MIFGHIAQPNPCR-LPAAIEKALDFLRATDFNALEPGVVEIDGKNIYAQIIDLTTREAVENRPEVHRRYIDIQFLAWGEE 79
Cdd:TIGR00022   1 MIIGSITNLNPKVgLPPAIAEAIDFLNATDLNALEPGRHDIDGDRIFMNVMEPETAEPVSKKAELHHRYLDIQLLLRGEE 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446498220   80 KIGIAIDTGNNKVSESLLEQRDIIFYHDSEHESFIEMIPGSYAIFFPQDVHRPGCIMQTASE 141
Cdd:TIGR00022  81 NIEVGTTPPNLSVYEDYLEEDDIQLCADIDDEQTVILKPGMFAVFYPGEPHKPGCVVNGPEE 142
EbgC COG2731
Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism];
1-138 2.93e-61

Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism];


Pssm-ID: 442037  Cd Length: 138  Bit Score: 185.07  E-value: 2.93e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446498220   1 MIFGHIAQP-NPCRLPAAIEKALDFLRATDFNALEPGVVEIDGKNIYAQIIDLTTREAVENRPEVHRRYIDIQFLAWGEE 79
Cdd:COG2731    1 MIIGNLSNLdRYAGLPPALKKALEFLKETDLAALPPGRYEIDGDNIFANVQEYETKPAEERKAEAHRKYIDIQILLSGEE 80
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446498220  80 KIGIAiDTGNNKVSESLLEQRDIIFYHDSEHESFIEMIPGSYAIFFPQDVHRPGCIMQT 138
Cdd:COG2731   81 RIGYA-PLENLEVSEPYDEEKDIQFYEDIEPESFLTLQPGDFAIFFPEDAHKPGCAVGE 138
DUF386 pfam04074
YhcH/YjgK/YiaL; This family consists of bacterial proteins. YjgK (TabA) influences biofilm ...
1-150 5.37e-59

YhcH/YjgK/YiaL; This family consists of bacterial proteins. YjgK (TabA) influences biofilm formation by toxin-antitoxin systems. Another member of this family, YhcH, is a possible sugar isomerase of sialic acid catabolism.


Pssm-ID: 461158  Cd Length: 148  Bit Score: 179.70  E-value: 5.37e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446498220    1 MIFGHIAQPNPCrLPAAIEKALDFLRATDFNALEPGVVEIDGKNIYAQIIDLTTREAVENRPEVHRRYIDIQFLAWGEEK 80
Cdd:pfam04074   1 MIIDNLENLERY-LHPNLKKAFEYLKETDLENLPLGKYEIDGDDLFANVQEYETKPAEEAKFESHRKYIDIQYVLEGEET 79
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446498220   81 IGIAIDTGNNKVSESLLEQRDIIFYHDSEHESFIEMIPGSYAIFFPQDVHRPGCiMQTASEIRKIVVKVA 150
Cdd:pfam04074  80 IGWAPLADLETLTEPYDEEKDIAFYADGEPETFVTLKPGDFAIFFPEDAHRPGI-GGGPEKVRKVVVKVR 148
acetylneur_anom NF040884
N-acetylneuraminate anomerase;
1-149 8.04e-40

N-acetylneuraminate anomerase;


Pssm-ID: 468820  Cd Length: 155  Bit Score: 131.52  E-value: 8.04e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446498220   1 MIFGHIAQPNPCR-LPAAIEKALDFLRATDFNALEPGVVEIDGKNIYAQIIDLTTREAVENRPEVHRRYIDIQFLAWGEE 79
Cdd:NF040884   1 MILGDLSQPESASgLPPVLQDALTLALAADLQELAPGRYEIDGDDIFMNVMEFETQPAESKKAELHRQYIDIQLLLSGEE 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446498220  80 KIGIAIdTGNNKVSESLLEQRDIIFYHDSEHESFIEMIPGSYAIFFPQDVHRPGCIMQTAS-EIRKIVVKV 149
Cdd:NF040884  81 RIDYGL-AGSARECEEYHEEDDYQLCDTIENEQTLTLTPGMFAVFMPGEPHKPGCVVGTPPgEIKKVVVKV 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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