|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
1-832 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1595.45 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 1 MIGILKKVF-DVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDLLPEAFAVVREAATRVLGM 79
Cdd:COG0653 1 MGKLLKKIFgSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 80 RPYGVQLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSM 159
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 160 SREEKQEAYAADITYSTNNELGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANA 239
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 240 FVRTLENEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQF 319
Cdd:COG0653 241 LVPRLKRDGDYTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPENIELVHHLNQALRAHALFKRDVDYIVKDGEVVIVDEF 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 320 TGRLMKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPII 399
Cdd:COG0653 321 TGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTNRPMI 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 400 RDDRADLIFKSMEGKFNAVVEDIVNRHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNAKNHAREADIIAEAGMKGA 479
Cdd:COG0653 401 RKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAKQHEREAEIVAQAGRPGA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 480 VTIATNMAGRGTDIKLG---------------------------------DDVKNV-GLAVIGTERHESRRIDNQLRGRA 525
Cdd:COG0653 481 VTIATNMAGRGTDIVLGgnpeflaaaeladrgleweeaiakikaewqaehEEVLEAgGLHVIGTERHESRRIDNQLRGRS 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 526 GRQGDPGVTQFYLSMEDELMRRFGSDNMKAMMDRLGMDDSQPIESKMVSRAVESAQKRVEGNNYDARKQLLQYDDVLRQQ 605
Cdd:COG0653 561 GRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNDQ 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 606 REVIYKQRQEVMESDNLRGIIEGMMKSTVERAVALHTQEE-IEEDWNIKGLVDYLNTNLLQDGDVKE-EELRRLAPEEMS 683
Cdd:COG0653 641 RKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGsYPEQWDLEGLEEALKELFGLDLPIEEwLDEEGLDEEELR 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 684 EPIIAKLIERYNEKEKLMPEEQMREFEKVVVFRVVDTKWTEHIDAMDHLREGIHLRAYGQIDPLREYQMEGFAMFESMVA 763
Cdd:COG0653 721 ERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFELFEEMLD 800
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446501534 764 SIEEEISRYIMKAEIEQNLERQEVVQG-EAVHPSSDGEE---AKKKPVVKGDQVGRNDLCKCGSGKKYKNCCG 832
Cdd:COG0653 801 SIKEEVVRYLFRVQVRSEEEREEVEEErRENHADPAGEEeeeAPKQPVRKGPKVGRNDPCPCGSGKKYKHCHG 873
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
1-832 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1531.56 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 1 MIGILKKVF-DVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDLLPEAFAVVREAATRVLGM 79
Cdd:PRK12904 1 MLGLLKKIFgSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 80 RPYGVQLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSM 159
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 160 SREEKQEAYAADITYSTNNELGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANA 239
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 240 FVRTLENEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQF 319
Cdd:PRK12904 241 IVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEF 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 320 TGRLMKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPII 399
Cdd:PRK12904 321 TGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMI 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 400 RDDRADLIFKSMEGKFNAVVEDIVNRHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNAKNHAREADIIAEAGMKGA 479
Cdd:PRK12904 401 RIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRPGA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 480 VTIATNMAGRGTDIKLG------------------------------DDVKNV-GLAVIGTERHESRRIDNQLRGRAGRQ 528
Cdd:PRK12904 481 VTIATNMAGRGTDIKLGgnpemlaaalleeeteeqiakikaewqeehEEVLEAgGLHVIGTERHESRRIDNQLRGRSGRQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 529 GDPGVTQFYLSMEDELMRRFGSDNMKAMMDRLGMDDSQPIESKMVSRAVESAQKRVEGNNYDARKQLLQYDDVLRQQREV 608
Cdd:PRK12904 561 GDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQRKV 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 609 IYKQRQEVMESDNLRGIIEGMMKSTVERAVALHTQEE-IEEDWNIKGLVDYLNTNLLQDGDVKEEELRRLAPEEMSEPII 687
Cdd:PRK12904 641 IYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGsYEEDWDLEGLEEALKTDFGLELPIEEWLEEGLDEEELRERIL 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 688 AKLIERYNEKEKLMPEEQMREFEKVVVFRVVDTKWTEHIDAMDHLREGIHLRAYGQIDPLREYQMEGFAMFESMVASIEE 767
Cdd:PRK12904 721 EAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFEEMLDSIKE 800
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446501534 768 EISRYIMKAEIeqnlerqevvqgeavhpssdgeeakkkpvvkgdqvgrnDLCKCGSGKKYKNCCG 832
Cdd:PRK12904 801 EVVRTLMKVQI--------------------------------------DPCPCGSGKKYKHCHG 827
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
1-782 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 1266.55 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 1 MIGILKKVFDVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDLLPEAFAVVREAATRVLGMR 80
Cdd:PRK12906 1 MANILKKWFDNDKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 81 PYGVQLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMS 160
Cdd:PRK12906 81 PFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 161 REEKQEAYAADITYSTNNELGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAF 240
Cdd:PRK12906 161 PDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 241 VRTL-----------ENEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVVQ 309
Cdd:PRK12906 241 VKTLikdeaedgdddEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 310 EGEIVIVDQFTGRLMKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNV 389
Cdd:PRK12906 321 DGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 390 IVIPTNKPIIRDDRADLIFKSMEGKFNAVVEDIVNRHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNAKNHAREAD 469
Cdd:PRK12906 401 ITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 470 IIAEAGMKGAVTIATNMAGRGTDIKLGDDVKNV-GLAVIGTERHESRRIDNQLRGRAGRQGDPGVTQFYLSMEDELMRRF 548
Cdd:PRK12906 481 IIMNAGQRGAVTIATNMAGRGTDIKLGPGVKELgGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRF 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 549 GSDNMKAMMDRLGM-DDSQPIESKMVSRAVESAQKRVEGNNYDARKQLLQYDDVLRQQREVIYKQRQEV-MESDNLRGII 626
Cdd:PRK12906 561 GSDRVKAFLDRLGMnDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQViNEDKDLKEVL 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 627 EGMMKSTVERAVALHTQEEiEEDWNIKGLVDYLNTNLLQDGDVKEEELRRLAPEEMSEPIIAKLIERYNEKEK-LMPEEQ 705
Cdd:PRK12906 641 MPMIKRTVDRQVQMYTQGD-KKDWDLDALRDFIVSAMPDEETFDFEDLKGKSPEELKKRLLDIVEDNYAEKEKqLGDPTQ 719
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446501534 706 MREFEKVVVFRVVDTKWTEHIDAMDHLREGIHLRAYGQIDPLREYQMEGFAMFESMVASIEEEISRYIMKAEIEQNL 782
Cdd:PRK12906 720 MLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQIRQNI 796
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
26-765 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1257.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 26 IDALESSIKPLTDEQLKGKTLEFKERLTK-GETVDDLLPEAFAVVREAATRVLGMRPYGVQLMGGIALHEGNISEMKTGE 104
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAKqGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 105 GKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSREEKQEAYAADITYSTNNELGFDY 184
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 185 LRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAFVRTLENEKDYSFDVKTKNVMLTED 264
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEVDYEVDEKNRAVLLTEQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 265 GITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQFTGRLMKGRRYSEGLHQAIEAKEGVE 344
Cdd:TIGR00963 241 GMKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 345 IQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRDDRADLIFKSMEGKFNAVVEDIVN 424
Cdd:TIGR00963 321 IQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEIKE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 425 RHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNAKNHAREADIIAEAGMKGAVTIATNMAGRGTDIKLgDDVKNV-G 503
Cdd:TIGR00963 401 RHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL-EEVKELgG 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 504 LAVIGTERHESRRIDNQLRGRAGRQGDPGVTQFYLSMEDELMRRFGSDNMKAMMDRLGMDDSQPIESKMVSRAVESAQKR 583
Cdd:TIGR00963 480 LYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKR 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 584 VEGNNYDARKQLLQYDDVLRQQREVIYKQRQEVMESDNLRGIIEGMMKSTVERAVALHTQEE-IEEDWNIKGLVDYLNTN 662
Cdd:TIGR00963 560 VEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLESEDLSELILQMLESTLDRIVDAYINEEkLSEEWDLEGLIEKLKTL 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 663 LLQDGDVKEEELRRLAPEEMSEPIIAKLIERYNEKEKLMPEEQMREFEKVVVFRVVDTKWTEHIDAMDHLREGIHLRAYG 742
Cdd:TIGR00963 640 FLLDGDLTPEDLENLTSEDLKELLLEKIRAAYDEKEEQLESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYG 719
|
730 740
....*....|....*....|...
gi 446501534 743 QIDPLREYQMEGFAMFESMVASI 765
Cdd:TIGR00963 720 QKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
6-788 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 1047.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 6 KKVFDVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDLLPEAFAVVREAATRVLGMRPYGVQ 85
Cdd:PRK09200 4 KLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYDVQ 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 86 LMGGIALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSR-EEK 164
Cdd:PRK09200 84 LIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDaSEK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 165 QEAYAADITYSTNNELGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAFVRTL 244
Cdd:PRK09200 164 KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 245 ENEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQFTGRLM 324
Cdd:PRK09200 244 EEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVL 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 325 KGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRDDRA 404
Cdd:PRK09200 324 PGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYP 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 405 DLIFKSMEGKFNAVVEDIVNRHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNAKNHAREADIIAEAGMKGAVTIAT 484
Cdd:PRK09200 404 DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKGAVTVAT 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 485 NMAGRGTDIKLGDDVKNV-GLAVIGTERHESRRIDNQLRGRAGRQGDPGVTQFYLSMEDELMRRFGSDNMKAMMDRLGMD 563
Cdd:PRK09200 484 NMAGRGTDIKLGEGVHELgGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLKKKLKTD 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 564 DSQ---PIESKMVSRAVESAQKRVEGNNYDARKQLLQYDDVLRQQREVIYKQRQEVMESD--NLRGIIEGMMKSTVERAV 638
Cdd:PRK09200 564 AQRltgLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDdrDLIDIVILMIDVYLEAVA 643
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 639 ALHTQEE-IEEDWNIKGLVDYLNTNLL-QDGDVKEEELRRLApeemsEPIIAKLIERyneKEKLMPEEQMREFEKVVVFR 716
Cdd:PRK09200 644 EEYLLEKsLLEEWIYENLSFQLNEILSnTNFPDKKEVVQFLL-----EEAEKQLKEK---RNKLPSATLYNQFLRKVALK 715
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446501534 717 VVDTKWTEHIDAMDHLREGIHLRAYGQIDPLREYQMEGFAMFESMVASIEEEISRYIMKAEIEQNLERQEVV 788
Cdd:PRK09200 716 AIDQNWVEQVDALQQLKEGIGLRQYGQRNPIREYQKEALESFEYMYENIKKDMVRNLLLSLLVFDKEGEIVI 787
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
5-775 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 1014.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 5 LKKVF-DVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDLLPEAFAVVREAATRVLGMRPYG 83
Cdd:TIGR04397 1 VKKLKgDSSARELKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 84 VQLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSREE 163
Cdd:TIGR04397 81 VQLIGGLVLLEGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 164 KQEAYAADITYSTNNELGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAFVRT 243
Cdd:TIGR04397 161 KKEAYQADITYGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAGKTGSSSELHYICARIIKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 244 LENEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQFTGRL 323
Cdd:TIGR04397 241 FEETEDYEYDPETKAASLTEEGITKIERAFGIDNLYDLEHQTLYHYLIQALRAHVLFKRDVDYIVKDGKIELVDMFTGRI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 324 MKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRDDR 403
Cdd:TIGR04397 321 MEGRSLSDGLHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFRETYGMDVVQIPTNRPRIRVDW 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 404 ADLIFKSMEGKFNAVVEDIVNRHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNAKNHAREADIIAEAGMKGAVTIA 483
Cdd:TIGR04397 401 PDRVFMTYEAKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAKTVEQEADLIALAGQKGQVTIA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 484 TNMAGRGTDIKLGDDVKNV-GLAVIGTERHESRRIDNQLRGRAGRQGDPGVTQFYLSMEDELMRRFGSDNMKAMMDRLGM 562
Cdd:TIGR04397 481 TNMAGRGTDILLGEGVHELgGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSQFIISLEDDMFRRYAAEELEKWKKKLKT 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 563 DDSQPIESKMVSRAVESAQKRVEGNNYDARKQLLQYDDVLRQQREVIYKQRQEVMESDNLRGIIEGMMKSTVERAVALHT 642
Cdd:TIGR04397 561 DETGEILNKDVHEFVDKVQRIIEGSHYSAREYNLKLDDVINEQRNVIYQLRDKLLEEEDAISEVLKMIRSAVEQIIDQYC 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 643 QEE-IEEDWNIKGLVDYLN-----TNLLQDGDVKE-EELRRLAPEEMSEPIiaklieryNEKEKLMPEEQMREFEKVVVF 715
Cdd:TIGR04397 641 PEEvLPEEWDLERLTEELNrifpvTFVTFDKRIADkEELKDLVKDTYEQYI--------AALEKLPENEEIQMRLKHVML 712
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 716 RVVDTKWTEHIDAMDHLREGIHLRAYGQIDPLREYQMEGFAMFESMVASIEEEISRYIMK 775
Cdd:TIGR04397 713 SVIDAHWTRHLDAMNLLKEGIGLRSYQQEDPMRLYQKEGLELFEAMYQNIEREICTELAR 772
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
5-778 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 998.80 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 5 LKKVFDVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDLLPEAFAVVREAATRVLGMRPYGV 84
Cdd:PRK12903 3 FLKLFFFKSTEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYDV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 85 QLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSREEK 164
Cdd:PRK12903 83 QIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 165 QEAYAADITYSTNNELGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAFVRTL 244
Cdd:PRK12903 163 REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTL 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 245 eNEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQFTGRLM 324
Cdd:PRK12903 243 -KEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIM 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 325 KGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRDDRA 404
Cdd:PRK12903 322 EGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEP 401
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 405 DLIFKSMEGKFNAVVEDIVNRHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNAKNHAREADIIAEAGMKGAVTIAT 484
Cdd:PRK12903 402 DSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQKGAITIAT 481
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 485 NMAGRGTDIKLGDDVKNV-GLAVIGTERHESRRIDNQLRGRAGRQGDPGVTQFYLSMEDELMRRF-GSDNMKAMMDRLGm 562
Cdd:PRK12903 482 NMAGRGTDIKLSKEVLELgGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFsNFDKIKEAFKKLG- 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 563 ddSQPIESKMVSRAVESAQKRVEGNNYDARKQLLQYDDVLRQQREVIYKQRQEVMESDNLRGIIEGMMKSTVERAVALHT 642
Cdd:PRK12903 561 --DDEIKSKFFSKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLILIADDLSHVIEKMISRAVEQILKNSF 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 643 QEEIEEDWNIKGLVDYLNTNLL--QDGDVKEEELRRLAPEEMSEPIIAKLIERYNEKEKLMPEE----QMREFEKVVVFR 716
Cdd:PRK12903 639 IILKNNTINYKELVEFLNDNLLriTHFKFSEKDFENYHKEELAQYLIEALNEIYFKKRQVILDKialnTFFESERYIILS 718
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446501534 717 VVDTKWTEHIDAMDHLREGIHLRAYGQIDPLREYQMEGFAMFESMVASIEEEISRYIMKAEI 778
Cdd:PRK12903 719 ALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQVYTEEGTKKFNILLQEIAYDVIVSLFNNPN 780
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
5-778 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 897.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 5 LKKVFDVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDLLPEAFAVVREAATRVLGMRPYGV 84
Cdd:CHL00122 1 MFNNLFNNKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 85 QLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSREEK 164
Cdd:CHL00122 81 QLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEER 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 165 QEAYAADITYSTNNELGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAFVRTL 244
Cdd:CHL00122 161 KKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 245 ENEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHvALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQFTGRLM 324
Cdd:CHL00122 241 EKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSAND-PWIPYILNALKAKELFFKNVHYIVRNNEIIIVDEFTGRIM 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 325 KGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRDDRA 404
Cdd:CHL00122 320 PGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLP 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 405 DLIFKSMEGKFNAVVEDIVNRHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNAK--NHAREADIIAEAGMKGAVTI 482
Cdd:CHL00122 400 DLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKpeNVRRESEIVAQAGRKGSITI 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 483 ATNMAGRGTDIKLGDD---------------------------------------------------------------- 498
Cdd:CHL00122 480 ATNMAGRGTDIILGGNpefklkkelydlllsyksnekistisqnflnilnslkndlkflslsdfenlkilneaseisipk 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 499 ----------------------------VKNV-GLAVIGTERHESRRIDNQLRGRAGRQGDPGVTQFYLSMEDELMRRFG 549
Cdd:CHL00122 560 nsyqlslrflynellekykklqekekkiVKKLgGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDNLLRIFG 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 550 SDNMKAMMDRLGMDDSqPIESKMVSRAVESAQKRVEGNNYDARKQLLQYDDVLRQQREVIYKQRQEVMESDNLRGIIEGM 629
Cdd:CHL00122 640 GDKIQNLMQTLNLDDE-PLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQSLRDWILAY 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 630 MKSTVERAVALhTQEEIEEDWNIKGLVDYLNTNLLQDGDVKEEELRRLAPEEMSEPIIAKLIERYNEKEKLMPEEQ---M 706
Cdd:CHL00122 719 GEQVIDDIITF-LKSRKNPNNKFINLINKFKELLKLPLCFNKSDLNTLNSGELKKFLYQQFWISYDLKELYLEQIGtglM 797
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446501534 707 REFEKVVVFRVVDTKWTEHIDAMDHLREGIHLRAYGQIDPLREYQMEGFAMFESMVASIEEEISRYIMKAEI 778
Cdd:CHL00122 798 RELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVIYDLFRSSI 869
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
1-833 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 880.51 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 1 MIGILKKVF-DVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFK------------------------------ 49
Cdd:PRK12901 1 MNEFLKKLFgDKSERDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKqyikeavadidakieelkaeaiesldider 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 50 ------------ERLTKGETV-DDLLPEAFAVVREAATRVLG-------------------------------------- 78
Cdd:PRK12901 81 ediyaqidklekEAYEILEKVlDEILPEAFAIVKETARRFAEneeievtatdfdrelaatkdfvtiegdkaiwknhwdag 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 79 -------MRPYGVQLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLT 151
Cdd:PRK12901 161 gneitwdMVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 152 VG-INLNSMSREEKQEAYAADITYSTNNELGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQA--- 227
Cdd:PRK12901 241 VDcIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVpkg 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 228 ------------------------------------------------------------------------QKSTELYM 235
Cdd:PRK12901 321 ddqefeelkprverlveaqrklatqflaeakkliaegdkkegglallrayrglpknkalikflseegikallQKTENFYM 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 236 FANAFVRTLENEKDY-SFDVKTKNVMLTEDGI-------------------------------TKAEKAFHIENLFdlKH 283
Cdd:PRK12901 401 QDNNREMPEVDEELYfVIDEKNNSVELTDKGIdyitgndedpdffvlpdigtelaeienegglDEEEEAEKKEELF--QD 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 284 VAL----LHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQFTGRLMKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQN 359
Cdd:PRK12901 479 YSVkserVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQN 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 360 YFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRDDRADLIFKSMEGKFNAVVEDIVNRHKQGQPVLVGTVAI 439
Cdd:PRK12901 559 YFRMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSV 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 440 ETSELISKMLTRKGVRHNILNAKNHAREADIIAEAGMKGAVTIATNMAGRGTDIKLGDDVKNV-GLAVIGTERHESRRID 518
Cdd:PRK12901 639 EISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEVKAAgGLAIIGTERHESRRVD 718
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 519 NQLRGRAGRQGDPGVTQFYLSMEDELMRRFGSDNMKAMMDRLGMDDSQPIESKMVSRAVESAQKRVEGNNYDARKQLLQY 598
Cdd:PRK12901 719 RQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLKEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEY 798
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 599 DDVLRQQREVIYKQRQEVMESDNLRGIIEGMMKSTVERAVALHTQEEieedwNIKGLVDYLNTNLLQDGDVKEEELRRLA 678
Cdd:PRK12901 799 DDVMNSQREVIYKRRRHALMGERLGMDIANMIYDVCEAIVENNKVAN-----DYKGFKFELIRTLAMESPITEEEFNKLK 873
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 679 PEEMSEPIIAKLIERYNEKEKLM-----------PEEQ-----------------------------------MREFEKV 712
Cdd:PRK12901 874 KDELTDKLYDAALENYQRKMERIaeiafpvikqvYEEQgnmyerivvpftdgkrtlnvvtnlkeayetegkeiVKDFEKN 953
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 713 VVFRVVDTKWTEHIDAMDHLREGIHLRAYGQIDPLREYQMEGFAMFESMVASIEEEISRYIMKAEI-------------E 779
Cdd:PRK12901 954 ITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFKNMVDKVNREVISFLFKGEIpvqeapeireaapE 1033
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446501534 780 QNLERQEVVQGE--------AVHPSSDGEEAKKKPVVKGDQVGRNDLCKC-----GSGKKYKNCCGI 833
Cdd:PRK12901 1034 RRLDPKYRTQKEeiqdsdqrAAASRDTGAQVKETPVRVEKKIGRNDPVPCqnvdgGSGKKYKFKHAE 1100
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
11-761 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 825.83 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 11 VNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDLLPEAFAVVREAATRVLGMRPYGVQLMGGI 90
Cdd:TIGR03714 1 INNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 91 ALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSREE-----KQ 165
Cdd:TIGR03714 81 VLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEydaneKR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 166 EAYAADITYSTNNELGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAFVRTLE 245
Cdd:TIGR03714 161 KIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 246 NEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQFTGRLMK 325
Cdd:TIGR03714 241 EDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 326 GRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRDDRAD 405
Cdd:TIGR03714 321 GTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 406 LIFKSMEGKFNAVVEDIVNRHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNAKNHAREADIIAEAGMKGAVTIATN 485
Cdd:TIGR03714 401 KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 486 MAGRGTDIKLGDDVKNV-GLAVIGTERHESRRIDNQLRGRAGRQGDPGVTQFYLSMEDELMRRFGSDNMKAMMDRLGMDD 564
Cdd:TIGR03714 481 MAGRGTDIKLGKGVAELgGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKD 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 565 SQ----PIESKMVSRAVESAQKRVEGNNYDARKQLLQYDDVLRQQREVIYKQRQEVME-SDNLRGIIEGMMKSTVERAVA 639
Cdd:TIGR03714 561 SKlkpsALFKRRFRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEgSDFLDDDVDQIIDDVFNMYAE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 640 LHTQEEiEEDwnikgLVDYLNTNL--LQDGDVKEEELrrlapeEMSEPIIAKLIERYNE-----KEKLMPEEQMREFEKV 712
Cdd:TIGR03714 641 EQDLSN-KSL-----LKRFILENLsyQFKNDPDEFDL------KNKEAIKDFLKEIADKelsekKKVLNNDYLFNDFERL 708
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 446501534 713 VVFRVVDTKWTEHIDAMDHLREGIHLRAYGQIDPLREYQMEGFAMFESM 761
Cdd:TIGR03714 709 SILKAIDENWIEQVDYLQQLKTVVTNRQNGQRNPIFEYHKEALESYEYM 757
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
5-382 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 750.41 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 5 LKKVF-DVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDLLPEAFAVVREAATRVLGMRPYG 83
Cdd:smart00957 1 LKKLFgSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 84 VQLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSREE 163
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 164 KQEAYAADITYSTNNELGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQK-STELYMFANAFVR 242
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 243 TLENEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQFTGR 322
Cdd:smart00957 241 RLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVDEFTGR 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 323 LMKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFR 382
Cdd:smart00957 321 VMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
5-382 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 695.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 5 LKKVF-DVNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDDLLPEAFAVVREAATRVLGMRPYG 83
Cdd:pfam07517 1 LKKIFgSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 84 VQLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSREE 163
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 164 KQEAYAADITYSTNNELGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANAFVRT 243
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 244 LENEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQFTGRL 323
Cdd:pfam07517 241 LEEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPENVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTGRV 320
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 446501534 324 MKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFR 382
Cdd:pfam07517 321 MPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
11-604 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 665.94 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 11 VNQRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTLEFKERLTKGETVDD-LLPEAFAVVREAATRVLGMRPYGVQLMGG 89
Cdd:PRK12898 33 VRGRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFRDaLLAEAFALVREASGRVLGQRHFDVQLMGG 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 90 IALHEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSREEKQEAYA 169
Cdd:PRK12898 113 LALLSGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYG 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 170 ADITYSTNNELGFDYLRDNMVLYK-------------------EQCVQRPLHFAIIDEVDSILVDEARTPLIISG--QAQ 228
Cdd:PRK12898 193 ADITYCTNKELVFDYLRDRLALGQrasdarlaleslhgrssrsTQLLLRGLHFAIVDEADSVLIDEARTPLIISApaKEA 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 229 KSTELYMFANAFVRTLENEKDYSFDVKTKNVMLTEDGITKAEKAfhIENLFDLKHVALLHH--INQGLRAHVVMHRDTDY 306
Cdd:PRK12898 273 DEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAEL--AESLPPAWRGAVRREelVRQALSALHLFRRDEHY 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 307 VVQEGEIVIVDQFTGRLMKGRRYSEGLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYN 386
Cdd:PRK12898 351 IVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYG 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 387 MNVIVIPTNKPIIRDDRADLIFKSMEGKFNAVVEDIVNRHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNAKNHAR 466
Cdd:PRK12898 431 LPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAE 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 467 EADIIAEAGMKGAVTIATNMAGRGTDIKLGDDVKNV-GLAVIGTERHESRRIDNQLRGRAGRQGDPGVTQFYLSMEDELM 545
Cdd:PRK12898 511 EAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARgGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLL 590
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446501534 546 RRFGSD--NMKAMMDRLGMDDSQPIESKMVSRavesAQKRVEGNNYDARKQLLQYDDVLRQ 604
Cdd:PRK12898 591 QSFLGSrgLAIRRMELLGPRGGRALGALLLRR----AQRRAERLHARARRALLHADEQLDK 647
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
13-767 |
0e+00 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 575.62 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 13 QRQIKRMQKTVEQIDALESSIKPLTDEQLKGKTlefKERLTKGETVDdlLPEAFAVVREAATRVLGMRPYGVQLMGGIAL 92
Cdd:TIGR04221 14 ERNQKRSLAIVPAAASRMKELSALDDEELTKAA---RDLVLSGEAAD--AAQFLAILREAAERTLGMRPFDVQLLGALRL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 93 HEGNISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSREEKQEAYAADI 172
Cdd:TIGR04221 89 LAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERRAAYACDV 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 173 TYSTNNELGFDYLRDNMVLYKEQCVQRPLHFAIIDEVDSILVDEARTPLIISGQAQKSTELYMFANaFVRTLENEKDYSF 252
Cdd:TIGR04221 169 TYASVNEIGFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAGNEPGEAPRGRITD-LVRRLREDKHYTV 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 253 DVKTKNVMLTEDGITKAEKAFHIENLFDLKHV-ALLHHINQGLRAHVVMHRDTDYVVQEGEIVIVDQFTGRLMKGRRYSE 331
Cdd:TIGR04221 248 DEDGRNVHLTEDGARAVEAELGIDDLYSEEHVgTTLVQVNVALHAHALLIRDVHYIVRDGKVALIDASRGRVAQLQRWPD 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 332 GLHQAIEAKEGVEIQNESMTLATITFQNYFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPTNKPIIRDDRADLIFKSM 411
Cdd:TIGR04221 328 GLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNTPNIRFDEADRVYATA 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 412 EGKFNAVVEDIVNRHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNAKNHAREADIIAEAGMKGAVTIATNMAGRGT 491
Cdd:TIGR04221 408 AEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAKNDAEEAAIIAEAGDIGAVTVSTQMAGRGT 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 492 DIKLG-------DDVKNVG-LAVIGTERHESRRIDNQLRGRAGRQGDPGVTQFYLSMEDELMRRFGSDNMKAMMDRlgMD 563
Cdd:TIGR04221 488 DIRLGgsdeadhDRVAELGgLHVIGTGRHRTARLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAVGGAGETVPAQPA--ED 565
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 564 DSqpIESKMVSRAVESAQKRVEGNNYDARKQLLQYDDVLRQQREVIYKQRQEVMESDNLRgiiegmmkstveravalhtq 643
Cdd:TIGR04221 566 GR--IESPRVQDFVDHAQRVAEGQLLEIHANTWRYNQLIAQQRDIIDERRETLLDTDTAW-------------------- 623
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 644 eeieedwnikglvdylntnllqdgdvkeEELRRLAPeemsepiiakliERYNEKEKLMPEEQMREFEKVVVFRVVDTKWT 723
Cdd:TIGR04221 624 ----------------------------QELSERAA------------DRAAELKKEVSEDALERAAREIMLYHLDRGWA 663
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 446501534 724 EHIDAMDHLREGIHLRAYGQIDPLREYQMEGFAMFESMVASIEE 767
Cdd:TIGR04221 664 EHLAYLDDVRESIHLRALGRETPLDEFHRMAVRAFKELAQRAVD 707
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
40-394 |
6.13e-139 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 410.77 E-value: 6.13e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 40 QLKGKTLEFKERLTKGETVDDLLPEAFAVVREAATRVLGMRPYGVQLMGGIALHEGNISEMKTGEGKTLTSTLPVYLNAL 119
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 120 TGKGVHVVTVNEYLAQRDASEMGQLHEFLGLTVGINLNSMSREEKQEAYAADITYSTNNELGFDYLRDNMVLYKEQCVQR 199
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 200 PLHFAIIDEVDSILVDEARTPLIISGqaqkstelymfanafvrtlenekdysfdvktknvmltedgitkaekafhienlf 279
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 280 dlkhvallhhinqglrahvvmhrdtdyvvqegeivivdqftgrlmkgrryseglhqaieakegveiqnesmTLATITFQN 359
Cdd:cd17928 187 -----------------------------------------------------------------------TLATITFQN 195
|
330 340 350
....*....|....*....|....*....|....*
gi 446501534 360 YFRMYEKLSGMTGTAKTEEEEFRNIYNMNVIVIPT 394
Cdd:cd17928 196 YFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
567-777 |
2.36e-100 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 310.19 E-value: 2.36e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 567 PIESKMVSRAVESAQKRVEGNNYDARKQLLQYDDVLRQQREVIYKQRQEVMESDNLRGIIEGMMKSTVERAVALHTQEE- 645
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVDDIVDEYIPPEe 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 646 IEEDWNIKGLVDYLNTNLLQDGDVKE-EELRRLAPEEMSEPIIAKLIERYNEKEKLMPEEQMREFEKVVVFRVVDTKWTE 724
Cdd:pfam07516 81 SPEEWDLEGLKEALNEIFGLELPISEwEEEEDLDKEELKERLLEAAEEAYEEKEEEIGPELMRELERVVLLQVIDSKWKE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 446501534 725 HIDAMDHLREGIHLRAYGQIDPLREYQMEGFAMFESMVASIEEEISRYIMKAE 777
Cdd:pfam07516 161 HLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
400-539 |
2.64e-81 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 257.09 E-value: 2.64e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 400 RDDRADLIFKSMEGKFNAVVEDIVNRHKQGQPVLVGTVAIETSELISKMLTRKGVRHNILNAKNHAREADIIAEAGMKGA 479
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446501534 480 VTIATNMAGRGTDIKLGDDVKNV-GLAVIGTERHESRRIDNQLRGRAGRQGDPGVTQFYLS 539
Cdd:cd18803 81 VTIATNMAGRGTDIKLGGNVEELgGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 141
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
229-338 |
1.87e-58 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 194.55 E-value: 1.87e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 229 KSTELYMFANAFVRTLENEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDTDYVV 308
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDEDYEVDEKAKTVELTEEGIEKAEKLLGIDNLYDPENIELVHHINQALKAHHLFKRDVDYIV 80
|
90 100 110
....*....|....*....|....*....|
gi 446501534 309 QEGEIVIVDQFTGRLMKGRRYSEGLHQAIE 338
Cdd:pfam01043 81 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
226-338 |
1.11e-57 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 192.28 E-value: 1.11e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 226 QAQKSTELYMFANAFVRTLE-NEKDYSFDVKTKNVMLTEDGITKAEKAFHIENLFDLKHVALLHHINQGLRAHVVMHRDT 304
Cdd:smart00958 1 PAEDSSELYKRADELVPTLKkDEEDYEVDEKSRQVALTEEGIEKAEKLLGIDNLYDPENIELVHHVNQALRAHKLFKRDV 80
|
90 100 110
....*....|....*....|....*....|....
gi 446501534 305 DYVVQEGEIVIVDQFTGRLMKGRRYSEGLHQAIE 338
Cdd:smart00958 81 DYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
93-222 |
1.14e-14 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 72.05 E-value: 1.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 93 HEGNISEMKTGEGKTLTSTLPVYLNALT-GKGVHVVTVNEYLAQRDASEMGQLhEFLGLTVGInLNSMSREEKQEAYA-- 169
Cdd:cd00046 1 GENVLITAPTGSGKTLAALLAALLLLLKkGKKVLVLVPTKALALQTAERLREL-FGPGIRVAV-LVGGSSAEEREKNKlg 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 446501534 170 -ADITYSTNNELGFDYLRDnmvlykEQCVQRPLHFAIIDEVDSILVDEARTPLI 222
Cdd:cd00046 79 dADIIIATPDMLLNLLLRE------DRLFLKDLKLIIVDEAHALLIDSRGALIL 126
|
|
| PRK05590 |
PRK05590 |
hypothetical protein; Provisional |
800-832 |
4.88e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 235521 Cd Length: 166 Bit Score: 61.91 E-value: 4.88e-11
10 20 30
....*....|....*....|....*....|...
gi 446501534 800 EEAKKKPVVKGDQVGRNDLCKCGSGKKYKNCCG 832
Cdd:PRK05590 132 EWKKSKTVVNENKVGRNDPCPCGSGKKYKKCCG 164
|
|
| YecA |
COG3318 |
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ... |
796-832 |
6.55e-10 |
|
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];
Pssm-ID: 442547 [Multi-domain] Cd Length: 45 Bit Score: 54.91 E-value: 6.55e-10
10 20 30
....*....|....*....|....*....|....*..
gi 446501534 796 SSDGEEAKKKPVVKGDQVGRNDLCKCGSGKKYKNCCG 832
Cdd:COG3318 7 CGPDLWALAIPRRAEPKVGRNDPCPCGSGKKYKKCCG 43
|
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
480-537 |
3.28e-09 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 53.71 E-value: 3.28e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 446501534 480 VTIATNMAGRGTDIKLGDdvknvglAVIGTERHESRRIDNQLRGRAGRQGDPGVTQFY 537
Cdd:cd09300 8 VLIAVN*ALTGFDAPELN-------TIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| SWIM_PBPRA1643 |
TIGR04102 |
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ... |
775-832 |
7.69e-09 |
|
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.
Pssm-ID: 200353 [Multi-domain] Cd Length: 108 Bit Score: 53.85 E-value: 7.69e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446501534 775 KAEIEQNLERQEVVQgeAVHPSSDGEE---------AKKKPVVKGDQVGRNDLCKCGSGKKYKNCCG 832
Cdd:TIGR04102 44 KAEVEAILAEHELFA--NIEVNADQEEniveldgllNKPKTTTFEKTPNRNDPCPCGSGKKYKKCCG 108
|
|
| SEC-C |
pfam02810 |
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ... |
815-832 |
1.48e-08 |
|
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.
Pssm-ID: 460704 [Multi-domain] Cd Length: 19 Bit Score: 50.55 E-value: 1.48e-08
|
| PRK01617 |
PRK01617 |
hypothetical protein; Provisional |
812-832 |
1.70e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 234966 Cd Length: 154 Bit Score: 54.27 E-value: 1.70e-08
|
| PRK02250 |
PRK02250 |
hypothetical protein; Provisional |
753-832 |
1.73e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 179393 [Multi-domain] Cd Length: 166 Bit Score: 54.50 E-value: 1.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 753 EGFAMFESMvasIEEEISRYIMKaeieqnlERQEVVQGEAVHPSSDG----EEAKKKP----VVKGDQVGRNDLCKCGSG 824
Cdd:PRK02250 89 EGFVEFKAY---FDEEGKRYCLE-------ERSRFLKENGLWYYIDGtfpeEEPEQDPrlnqSVSSLKQGRNDPCICGSG 158
|
....*...
gi 446501534 825 KKYKNCCG 832
Cdd:PRK02250 159 KKFKKCCG 166
|
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
97-137 |
2.61e-07 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 48.67 E-value: 2.61e-07
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 446501534 97 ISEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLAQRD 137
Cdd:cd17912 3 LHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEI 43
|
|
| PRK10396 |
PRK10396 |
hypothetical protein; Provisional |
800-831 |
3.00e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 236680 [Multi-domain] Cd Length: 221 Bit Score: 52.06 E-value: 3.00e-07
10 20 30
....*....|....*....|....*....|..
gi 446501534 800 EEAKKKPVVKGDQVGRNDLCKCGSGKKYKNCC 831
Cdd:PRK10396 188 EKAVQQPIKAEEKVGRNDPCPCGSGKKFKQCC 219
|
|
| SF2_C |
cd18785 |
C-terminal helicase domain of superfamily 2 DEAD/H-box helicases; Superfamily (SF)2 helicases ... |
462-530 |
1.37e-05 |
|
C-terminal helicase domain of superfamily 2 DEAD/H-box helicases; Superfamily (SF)2 helicases include DEAD-box helicases, UvrB, RecG, Ski2, Sucrose Non-Fermenting (SNF) family helicases, and dicer proteins, among others. Similar to SF1 helicases, they do not form toroidal structures like SF3-6 helicases. SF2 helicases are a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Their helicase core is surrounded by C- and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains, or domains engaged in protein-protein interactions. The core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350172 [Multi-domain] Cd Length: 77 Bit Score: 43.85 E-value: 1.37e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446501534 462 KNHAREADIIAEAgMKgaVTIATNMAGRGTDIKLGDdvknvglAVIGTERHESRRIDNQLRGRAGRQGD 530
Cdd:cd18785 10 TNSIEHAEEIASS-LE--ILVATNVLGEGIDVPSLD-------TVIFFDPPSSAASYIQRVGRAGRGGK 68
|
|
| HELICc |
smart00490 |
helicase superfamily c-terminal domain; |
443-529 |
2.73e-04 |
|
helicase superfamily c-terminal domain;
Pssm-ID: 197757 [Multi-domain] Cd Length: 82 Bit Score: 40.27 E-value: 2.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 443 ELISKMLTRKGVRHNILNAKNHAREADIIAEAGMKGAVTI--ATNMAGRGTDIKLGDDVKNVGLAVigterheSRRIDNQ 520
Cdd:smart00490 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVlvATDVAERGLDLPGVDLVIIYDLPW-------SPASYIQ 73
|
....*....
gi 446501534 521 LRGRAGRQG 529
Cdd:smart00490 74 RIGRAGRAG 82
|
|
| PRK00183 |
PRK00183 |
hypothetical protein; Provisional |
812-832 |
4.79e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 166842 Cd Length: 157 Bit Score: 41.32 E-value: 4.79e-04
|
| DEADc_DDX51 |
cd17956 |
DEAD-box helicase domain of DEAD box protein 51; DDX51 aids cell cancer proliferation by ... |
102-213 |
4.64e-03 |
|
DEAD-box helicase domain of DEAD box protein 51; DDX51 aids cell cancer proliferation by regulating multiple signalling pathways. Mammalian DEAD box protein Ddx51 acts in 3' end maturation of 28S rRNA by promoting the release of U8 snoRNA.It is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Pssm-ID: 350714 [Multi-domain] Cd Length: 231 Bit Score: 39.54 E-value: 4.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 102 TGEGKTLTSTLPVyLNALTGKGVH------VVTVNEyLAQRDASEMGQLHEFLGLTVGINLNSMSREEKQEAY------- 168
Cdd:cd17956 45 TGSGKTLAYVLPI-VQALSKRVVPrlraliVVPTKE-LVQQVYKVFESLCKGTGLKVVSLSGQKSFKKEQKLLlvdtsgr 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 446501534 169 ---AADITYST--------NNELGFD--YLRdnmvlykeqcvqrplhFAIIDEVDSIL 213
Cdd:cd17956 123 ylsRVDILVATpgrlvdhlNSTPGFTlkHLR----------------FLVIDEADRLL 164
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
80-223 |
4.74e-03 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 39.40 E-value: 4.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501534 80 RPYGVQLMGGIALHEGNIS---EMKTGEGKTLTSTLPVYLNALTGKGVHVV----TVNeyLAQRDASEMGQLHEFLGLTV 152
Cdd:smart00487 8 PLRPYQKEAIEALLSGLRDvilAAPTGSGKTLAALLPALEALKRGKGGRVLvlvpTRE--LAEQWAEELKKLGPSLGLKV 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446501534 153 GINLNSMSREEKQEAYA---ADITYSTnnelgFDYLRDNmvLYKEQCVQRPLHFAIIDEVDSILvDEARTPLII 223
Cdd:smart00487 86 VGLYGGDSKREQLRKLEsgkTDILVTT-----PGRLLDL--LENDKLSLSNVDLVILDEAHRLL-DGGFGDQLE 151
|
|
| YchJ |
COG3012 |
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ... |
814-832 |
4.94e-03 |
|
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];
Pssm-ID: 442249 Cd Length: 144 Bit Score: 38.29 E-value: 4.94e-03
|
| |
