|
Name |
Accession |
Description |
Interval |
E-value |
| KpsC |
COG3563 |
Capsule polysaccharide export protein KpsC/LpsZ [Cell wall/membrane/envelope biogenesis]; |
2-675 |
0e+00 |
|
Capsule polysaccharide export protein KpsC/LpsZ [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442784 [Multi-domain] Cd Length: 675 Bit Score: 984.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 2 IGIYSLGIWRIPHLEKFLAQPCQKLSLLRPvpQEVDAIAVWGHRPSAAKPVAIAKAAGKPVIRLEDGFVRSLDLGVNGEP 81
Cdd:COG3563 5 LGVFSGGILRIPRLRRFLGLAGYDLRLGLP--GPADAVAGWGRKPSARRARAYAARHGLPLIRLEDGFLRSLGLGRAGEP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 82 PLSLVVDDCGIYYDASKPSALEKLVQDKA-GNTALISQAREAMHTIVTGDLSKYNLAPAFVADESERaDIVLVVDQTFND 160
Cdd:COG3563 83 PLSLVVDDLGIYYDATRPSRLEQLLATAPlDDAALLARARAAIARIRAARLSKYNHAPPFLPPPPDP-GYVLVVDQTAGD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 161 MSVTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSQVYVVTSQ 240
Cdd:COG3563 162 ASVRYGGADAASFLEMLAAALAENPGARILVKTHPDVLAGKKQGYLTAADADDRVRLLTEDVSPWSLLEGADAVYTVTSQ 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 241 YGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSAllsaRRGSATLEELFAAAYLRYCRYIDPQTGEVSNLFTVLQWLQLQ 320
Cdd:COG3563 242 MGFEALLAGKPVRCFGMPFYAGWGLTDDRHPCPR----RRRRRTLAQLFAAAYILYPRYLDPYTGQLCELEDVIDWLAAQ 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 321 RRHLQQRNGYLWAPGLTLWKSAILKPFLQTATNRLSFSRRCTAA--------SACVVWGVKGEQQwRAEAQRKSLPLWRM 392
Cdd:COG3563 318 RRAWRRDRGGLVAVGFSLWKRAFLKPFLGRPGGRLRFVRSPKKAarlalasgRKLLVWGSKAPEE-LELAAQRGAPVLRM 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 393 EDGFLRSSGLGSDLLPPLSLVLDKRGIYYDATRPSDLEVLLNHSQLTLAQKMRAEKLRQRLVESKLSKYNLGADFSLPAE 472
Cdd:COG3563 397 EDGFLRSVGLGSDLVPPLSLVLDDLGIYYDPTRPSDLERLLNTAAFSPAELARAEALRQRLVEAGLSKYNLGGRTPLPRL 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 473 AKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLVGNRKGNIPTELIAELADYQALDADI 552
Cdd:COG3563 477 PAGRRVILVPGQVEDDASIRLGSPGIRTNLDLLRAVRAANPDAYIIYKPHPDVVAGNRKGAVPEAEALRLADLVVTDADI 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 553 IQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHCPRREQKLTIADLIYQALIVYPTYIHPTRLQPI 632
Cdd:COG3563 557 VSLLDAVDEVHTMTSLAGFEALLRGKRVVTYGQPFYAGWGLTRDLLPVARRTRRLSLDELVAATLIAYPRYVDPVTGLPC 636
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 446501655 633 TVEEAAEYLIQTPRKPMfitrKKAGRVIRYYRKLIMFCKVRFG 675
Cdd:COG3563 637 PPEVAVDRLAEQRAPLP----GPLGWLRRLLRKLQGLLASLAH 675
|
|
| beta_Kdo_transferase_KpsC_2 |
cd16439 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat 2; KpsC is a ... |
368-623 |
2.01e-163 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat 2; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319747 Cd Length: 259 Bit Score: 469.23 E-value: 2.01e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 368 VVWGVKGEQQWRAEAQRKSLPLWRMEDGFLRSSGLGSDLLPPLSLVLDKRGIYYDATRPSDLEVLLNHSQLTLAQKMRAE 447
Cdd:cd16439 4 VVWGSREPPELLAAAAAAGIPVWRVEDGFIRSVGLGADLTPPLSLVLDDRGIYYDPTRPSDLETLLNTHDFDDALLARAR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 448 KLRQRLVESKLSKYNLGADFSLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLV 527
Cdd:cd16439 84 RLRELLVELGISKYNLGGDAPLPAPPKGRRVILVPGQVEDDASIRLGSPDIKTNLELLRAVRAENPDAFIIYKPHPDVLA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 528 GNRKGNIPTELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHCPRREQKL 607
Cdd:cd16439 164 GLRKGAVPEAEALKLADEVVTDASIADLLEQVDEVHTMTSLTGFEALLRGKKVTTYGLPFYAGWGLTDDRLPLPRRTRRL 243
|
250
....*....|....*.
gi 446501655 608 TIADLIYQALIVYPTY 623
Cdd:cd16439 244 TLDELVAGALILYPRY 259
|
|
| Capsule_synth |
pfam05159 |
Capsule polysaccharide biosynthesis protein; This family includes export proteins involved in ... |
37-299 |
4.66e-52 |
|
Capsule polysaccharide biosynthesis protein; This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS and LipB.
Pssm-ID: 282949 Cd Length: 310 Bit Score: 182.36 E-value: 4.66e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 37 DAIAVWGHRPSAAKPVA-IAKAAGKPVIRLEDGFVRsldlgvngepPLSLVVDDCGIYYDASKPSALEKLVQDKAGNT-- 113
Cdd:pfam05159 1 EAIVLWGDRRSYHRIAAiAAAQHGVRFWVFEDGYLR----------PYSITLEKIGIYYDSNLPSDPEQLLLAATGLPep 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 114 -------------ALISQAREAMHTIVTGDLSKYNL--------------------------APAFVADESER-ADIVLV 153
Cdd:pfam05159 71 daprpyrqdflpqATLDIAYYLINFINQHHFPKYNHhrifnplaeyagsirrraayygedreADKLIRLLSPKkRRIFLV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 154 VDQTFNDMSVTYGNAGPHE---FAAMLEAAMAENP-QAEIWVKVHPDVLEGKK-----TGYFADLRATQRVRLIAENVSP 224
Cdd:pfam05159 151 PLQVEDDSQVRIHGPFGSVrsaILHMLESFAENAPaDSNIIIKTHPDDRGGIKyrriiKGYATQLPGFKRRVLYIDDGNL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 225 QSLLRHVSQVYVVTSQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALLSARR-----GSATLEELFAAAYLRYCRY 299
Cdd:pfam05159 231 PSLLDHVDGVVTVNSTAGFEALLHGKPVVTLGTAWYAGWGLTDQRHLAIFWTAPRRpdrvlFGAYLLYLAAVTQINGNFY 310
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| KpsC |
COG3563 |
Capsule polysaccharide export protein KpsC/LpsZ [Cell wall/membrane/envelope biogenesis]; |
2-675 |
0e+00 |
|
Capsule polysaccharide export protein KpsC/LpsZ [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442784 [Multi-domain] Cd Length: 675 Bit Score: 984.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 2 IGIYSLGIWRIPHLEKFLAQPCQKLSLLRPvpQEVDAIAVWGHRPSAAKPVAIAKAAGKPVIRLEDGFVRSLDLGVNGEP 81
Cdd:COG3563 5 LGVFSGGILRIPRLRRFLGLAGYDLRLGLP--GPADAVAGWGRKPSARRARAYAARHGLPLIRLEDGFLRSLGLGRAGEP 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 82 PLSLVVDDCGIYYDASKPSALEKLVQDKA-GNTALISQAREAMHTIVTGDLSKYNLAPAFVADESERaDIVLVVDQTFND 160
Cdd:COG3563 83 PLSLVVDDLGIYYDATRPSRLEQLLATAPlDDAALLARARAAIARIRAARLSKYNHAPPFLPPPPDP-GYVLVVDQTAGD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 161 MSVTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHPDVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSQVYVVTSQ 240
Cdd:COG3563 162 ASVRYGGADAASFLEMLAAALAENPGARILVKTHPDVLAGKKQGYLTAADADDRVRLLTEDVSPWSLLEGADAVYTVTSQ 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 241 YGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSAllsaRRGSATLEELFAAAYLRYCRYIDPQTGEVSNLFTVLQWLQLQ 320
Cdd:COG3563 242 MGFEALLAGKPVRCFGMPFYAGWGLTDDRHPCPR----RRRRRTLAQLFAAAYILYPRYLDPYTGQLCELEDVIDWLAAQ 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 321 RRHLQQRNGYLWAPGLTLWKSAILKPFLQTATNRLSFSRRCTAA--------SACVVWGVKGEQQwRAEAQRKSLPLWRM 392
Cdd:COG3563 318 RRAWRRDRGGLVAVGFSLWKRAFLKPFLGRPGGRLRFVRSPKKAarlalasgRKLLVWGSKAPEE-LELAAQRGAPVLRM 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 393 EDGFLRSSGLGSDLLPPLSLVLDKRGIYYDATRPSDLEVLLNHSQLTLAQKMRAEKLRQRLVESKLSKYNLGADFSLPAE 472
Cdd:COG3563 397 EDGFLRSVGLGSDLVPPLSLVLDDLGIYYDPTRPSDLERLLNTAAFSPAELARAEALRQRLVEAGLSKYNLGGRTPLPRL 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 473 AKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLVGNRKGNIPTELIAELADYQALDADI 552
Cdd:COG3563 477 PAGRRVILVPGQVEDDASIRLGSPGIRTNLDLLRAVRAANPDAYIIYKPHPDVVAGNRKGAVPEAEALRLADLVVTDADI 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 553 IQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHCPRREQKLTIADLIYQALIVYPTYIHPTRLQPI 632
Cdd:COG3563 557 VSLLDAVDEVHTMTSLAGFEALLRGKRVVTYGQPFYAGWGLTRDLLPVARRTRRLSLDELVAATLIAYPRYVDPVTGLPC 636
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 446501655 633 TVEEAAEYLIQTPRKPMfitrKKAGRVIRYYRKLIMFCKVRFG 675
Cdd:COG3563 637 PPEVAVDRLAEQRAPLP----GPLGWLRRLLRKLQGLLASLAH 675
|
|
| beta_Kdo_transferase_KpsC_2 |
cd16439 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat 2; KpsC is a ... |
368-623 |
2.01e-163 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat 2; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319747 Cd Length: 259 Bit Score: 469.23 E-value: 2.01e-163
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 368 VVWGVKGEQQWRAEAQRKSLPLWRMEDGFLRSSGLGSDLLPPLSLVLDKRGIYYDATRPSDLEVLLNHSQLTLAQKMRAE 447
Cdd:cd16439 4 VVWGSREPPELLAAAAAAGIPVWRVEDGFIRSVGLGADLTPPLSLVLDDRGIYYDPTRPSDLETLLNTHDFDDALLARAR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 448 KLRQRLVESKLSKYNLGADFSLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVLV 527
Cdd:cd16439 84 RLRELLVELGISKYNLGGDAPLPAPPKGRRVILVPGQVEDDASIRLGSPDIKTNLELLRAVRAENPDAFIIYKPHPDVLA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 528 GNRKGNIPTELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHCPRREQKL 607
Cdd:cd16439 164 GLRKGAVPEAEALKLADEVVTDASIADLLEQVDEVHTMTSLTGFEALLRGKKVTTYGLPFYAGWGLTDDRLPLPRRTRRL 243
|
250
....*....|....*.
gi 446501655 608 TIADLIYQALIVYPTY 623
Cdd:cd16439 244 TLDELVAGALILYPRY 259
|
|
| beta_Kdo_transferase_KpsC |
cd16437 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC; KpsC is a ... |
367-623 |
1.39e-156 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides, that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319745 Cd Length: 256 Bit Score: 451.96 E-value: 1.39e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 367 CVVWGVKGEQQWRAEAQRKSLPLWRMEDGFLRSSGLGSDLLPPLSLVLDKRGIYYDATRPSDLEVLLNHSQLTLAQKMRA 446
Cdd:cd16437 1 IAVWGHRPSAAKPVIAQRHGLPLWRMEDGFLRSLGLGVDLEPPLSLVVDDYGIYYDASRPSDLEKLLNDAAFNTALLSRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 447 EKLRQRLVESKLSKYNLGADFSLpAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDVL 526
Cdd:cd16437 81 EELRHRLVTGKLSKYNLAPDFVA-DESKRRDIILVPGQVENDASITTGNASIHSNAALLRAVREENPDAEIWYKVHPDVL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 527 VGNRKGNIPTELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHCPRREQK 606
Cdd:cd16437 160 EGKRTGYFLALRATQLVDLIAEDVDIQSLLRRVDRVHTMTSLYGFEALLAGKQVHCYGLPFYAGWGLTDDRHPCPRRRGS 239
|
250
....*....|....*..
gi 446501655 607 LTIADLIYQALIVYPTY 623
Cdd:cd16437 240 LTLEELFAATLIRYPRY 256
|
|
| beta_Kdo_transferase_KpsC |
cd16437 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC; KpsC is a ... |
39-299 |
9.29e-144 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides, that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319745 Cd Length: 256 Bit Score: 419.22 E-value: 9.29e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 39 IAVWGHRPSAAKPVaIAKAAGKPVIRLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALISQ 118
Cdd:cd16437 1 IAVWGHRPSAAKPV-IAQRHGLPLWRMEDGFLRSLGLGVDLEPPLSLVVDDYGIYYDASRPSDLEKLLNDAAFNTALLSR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 119 AREAMHTIVTGDLSKYNLAPAFVADESERADIVLVVDQTFNDMSVTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHPDVL 198
Cdd:cd16437 80 AEELRHRLVTGKLSKYNLAPDFVADESKRRDIILVPGQVENDASITTGNASIHSNAALLRAVREENPDAEIWYKVHPDVL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 199 EGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSQVYVVTSQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQsallSA 278
Cdd:cd16437 160 EGKRTGYFLALRATQLVDLIAEDVDIQSLLRRVDRVHTMTSLYGFEALLAGKQVHCYGLPFYAGWGLTDDRHPC----PR 235
|
250 260
....*....|....*....|.
gi 446501655 279 RRGSATLEELFAAAYLRYCRY 299
Cdd:cd16437 236 RRGSLTLEELFAATLIRYPRY 256
|
|
| beta_Kdo_transferase_KpsC_1 |
cd16440 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat1; KpsC is a ... |
39-302 |
1.41e-140 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat1; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319748 Cd Length: 262 Bit Score: 411.11 E-value: 1.41e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 39 IAVWGHRPSAAKPVAIAKAAGKPVIRLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLVQDKAGNT-ALIS 117
Cdd:cd16440 1 VVGWGRKPSARRARAYAARHGLPYLALEDGFLRSLGLGVDGEPPLSLVVDDLGIYYDATRPSRLEQLLNSPLFLDaALLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 118 QAREAMHTIVTGDLSKYNLAPAF-VADESERADIVLVVDQTFNDMSVTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHPD 196
Cdd:cd16440 81 RARRAIALIREHRLSKYNHAPDLpPLLGPPPRPRVLVVDQTAGDASIAYGGASAASFRRMLEAALEENPDAEILVKTHPD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 197 VLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSQVYVVTSQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPqsalL 276
Cdd:cd16440 161 VLAGKKKGYLLELAADPRVTLLAEDVNPISLLEHADAVYTVTSQMGFEALLAGKPVHCFGMPFYAGWGLTDDRLP----C 236
|
250 260
....*....|....*....|....*.
gi 446501655 277 SARRGSATLEELFAAAYLRYCRYIDP 302
Cdd:cd16440 237 PRRRRKRSLEQLFAAAYILYPRYVDP 262
|
|
| beta_Kdo_transferase |
cd16436 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; KpsC and KpsS are retaining ... |
367-623 |
1.26e-102 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; KpsC and KpsS are retaining beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferases. They are part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.
Pssm-ID: 319744 Cd Length: 222 Bit Score: 312.17 E-value: 1.26e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 367 CVVWGVKGEQQWRA-EAQRKSLPLWRMEDGFLRSSGLGSDLLPPLSLVLDKRGIYYDATRPSDLEVLLNHsqltlaqkmr 445
Cdd:cd16436 1 VVGWGDRRPGQRAAaWALRAGVPVWRFEDGFLRSVSLGVLGDRPLSIVLDKLGIYYDASRPSRLEMLLKD---------- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 446 aeklrqrlvesklskynlgadfslpaeakdkKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDV 525
Cdd:cd16436 71 -------------------------------KAFLVPLQVSGDVQVRLGGAVASSFLHVLASFLEHNPDTPIIIKHHPDV 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 526 LVGNRKG-NIPTELIAELADYQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHCPRRE 604
Cdd:cd16436 120 RGGKDYGyLIDETLSLERRVLLVHDVSLPSLLKRAGGVVTVNSTSGFEALLHGKPVKVLGLPWYAGWGLTDDRHLAAFWV 199
|
250 260
....*....|....*....|...
gi 446501655 605 Q----KLTIADLIYQALIVYPTY 623
Cdd:cd16436 200 AarlgNATLHYLFGATQINYNFY 222
|
|
| beta_Kdo_transferase_KpsC_1 |
cd16440 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat1; KpsC is a ... |
368-626 |
2.90e-97 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat1; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319748 Cd Length: 262 Bit Score: 299.79 E-value: 2.90e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 368 VVWGVKGEQQW-RAEAQRKSLPLWRMEDGFLRSSGLGSDLLPPLSLVLDKRGIYYDATRPSDLEVLLNHSQLTLAQKM-R 445
Cdd:cd16440 2 VGWGRKPSARRaRAYAARHGLPYLALEDGFLRSLGLGVDGEPPLSLVVDDLGIYYDATRPSRLEQLLNSPLFLDAALLaR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 446 AEKLRQRLVESKLSKYNLGADFSLPAEAKDKKVILVPGQVEDDASIKTGTVSIKSNLELLRTVRERNPHAYIIYKPHPDV 525
Cdd:cd16440 82 ARRAIALIREHRLSKYNHAPDLPPLLGPPPRPRVLVVDQTAGDASIAYGGASAASFRRMLEAALEENPDAEILVKTHPDV 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 526 LVGNRKGNIPTelIAELADYQALDADI--IQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEHHCPRR 603
Cdd:cd16440 162 LAGKKKGYLLE--LAADPRVTLLAEDVnpISLLEHADAVYTVTSQMGFEALLAGKPVHCFGMPFYAGWGLTDDRLPCPRR 239
|
250 260
....*....|....*....|...
gi 446501655 604 EQKLTIADLIYQALIVYPTYIHP 626
Cdd:cd16440 240 RRKRSLEQLFAAAYILYPRYVDP 262
|
|
| beta_Kdo_transferase_KpsC_2 |
cd16439 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat 2; KpsC is a ... |
37-299 |
5.45e-87 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat 2; KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
Pssm-ID: 319747 Cd Length: 259 Bit Score: 272.78 E-value: 5.45e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 37 DAIAVWGHRPSAAkPVAIAKAAGKPVIRLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALI 116
Cdd:cd16439 1 GRVVVWGSREPPE-LLAAAAAAGIPVWRVEDGFIRSVGLGADLTPPLSLVLDDRGIYYDPTRPSDLETLLNTHDFDDALL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 117 SQAREAMHTIVTGDLSKYNL-APAFVADESERADIVLVVDQTFNDMSVTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHP 195
Cdd:cd16439 80 ARARRLRELLVELGISKYNLgGDAPLPAPPKGRRVILVPGQVEDDASIRLGSPDIKTNLELLRAVRAENPDAFIIYKPHP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 196 DVLEGKKTGYFADLRATQRVRLIAENVSPQSLLRHVSQVYVVTSQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPqsal 275
Cdd:cd16439 160 DVLAGLRKGAVPEAEALKLADEVVTDASIADLLEQVDEVHTMTSLTGFEALLRGKKVTTYGLPFYAGWGLTDDRLP---- 235
|
250 260
....*....|....*....|....*
gi 446501655 276 lSARRG-SATLEELFAAAYLRYCRY 299
Cdd:cd16439 236 -LPRRTrRLTLDELVAGALILYPRY 259
|
|
| beta_Kdo_transferase |
cd16436 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; KpsC and KpsS are retaining ... |
39-299 |
2.70e-54 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; KpsC and KpsS are retaining beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferases. They are part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.
Pssm-ID: 319744 Cd Length: 222 Bit Score: 185.44 E-value: 2.70e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 39 IAVWGHRPSAAKPVAIAKAAGKPVIRLEDGFVRSLDLGVNGEPPLSLVVDDCGIYYDASKPSALEKLVQDKagntalisq 118
Cdd:cd16436 1 VVGWGDRRPGQRAAAWALRAGVPVWRFEDGFLRSVSLGVLGDRPLSIVLDKLGIYYDASRPSRLEMLLKDK--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 119 areamhtivtgdlskynlapafvadeseradIVLVVDQTFNDMSVTYGNAGPHEFAAMLEAAMAENPQAEIWVKVHPDVL 198
Cdd:cd16436 72 -------------------------------AFLVPLQVSGDVQVRLGGAVASSFLHVLASFLEHNPDTPIIIKHHPDVR 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 199 EGKKTGYFADLR-ATQRVRLIAENVSPQSLLRHVSQVYVVTSQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALLS 277
Cdd:cd16436 121 GGKDYGYLIDETlSLERRVLLVHDVSLPSLLKRAGGVVTVNSTSGFEALLHGKPVKVLGLPWYAGWGLTDDRHLAAFWVA 200
|
250 260
....*....|....*....|..
gi 446501655 278 ARRGSATLEELFAAAYLRYCRY 299
Cdd:cd16436 201 ARLGNATLHYLFGATQINYNFY 222
|
|
| Capsule_synth |
pfam05159 |
Capsule polysaccharide biosynthesis protein; This family includes export proteins involved in ... |
37-299 |
4.66e-52 |
|
Capsule polysaccharide biosynthesis protein; This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS and LipB.
Pssm-ID: 282949 Cd Length: 310 Bit Score: 182.36 E-value: 4.66e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 37 DAIAVWGHRPSAAKPVA-IAKAAGKPVIRLEDGFVRsldlgvngepPLSLVVDDCGIYYDASKPSALEKLVQDKAGNT-- 113
Cdd:pfam05159 1 EAIVLWGDRRSYHRIAAiAAAQHGVRFWVFEDGYLR----------PYSITLEKIGIYYDSNLPSDPEQLLLAATGLPep 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 114 -------------ALISQAREAMHTIVTGDLSKYNL--------------------------APAFVADESER-ADIVLV 153
Cdd:pfam05159 71 daprpyrqdflpqATLDIAYYLINFINQHHFPKYNHhrifnplaeyagsirrraayygedreADKLIRLLSPKkRRIFLV 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 154 VDQTFNDMSVTYGNAGPHE---FAAMLEAAMAENP-QAEIWVKVHPDVLEGKK-----TGYFADLRATQRVRLIAENVSP 224
Cdd:pfam05159 151 PLQVEDDSQVRIHGPFGSVrsaILHMLESFAENAPaDSNIIIKTHPDDRGGIKyrriiKGYATQLPGFKRRVLYIDDGNL 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 225 QSLLRHVSQVYVVTSQYGFEALLAGKPVTCFGQPWYAGWGLTDDRHPQSALLSARR-----GSATLEELFAAAYLRYCRY 299
Cdd:pfam05159 231 PSLLDHVDGVVTVNSTAGFEALLHGKPVVTLGTAWYAGWGLTDQRHLAIFWTAPRRpdrvlFGAYLLYLAAVTQINGNFY 310
|
|
| Capsule_synth |
pfam05159 |
Capsule polysaccharide biosynthesis protein; This family includes export proteins involved in ... |
379-623 |
2.00e-38 |
|
Capsule polysaccharide biosynthesis protein; This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS and LipB.
Pssm-ID: 282949 Cd Length: 310 Bit Score: 144.61 E-value: 2.00e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 379 RAEAQRKS-LPLWRMEDGFLRssglgsdllpPLSLVLDKRGIYYDATRPSDLEVLLNH------------------SQLT 439
Cdd:pfam05159 16 AAIAAAQHgVRFWVFEDGYLR----------PYSITLEKIGIYYDSNLPSDPEQLLLAatglpepdaprpyrqdflPQAT 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 440 LAQKMRAEKLRQrlvESKLSKYNLGADFSLPAE--------------------------AKDKKVILVPGQVEDDASIKT 493
Cdd:pfam05159 86 LDIAYYLINFIN---QHHFPKYNHHRIFNPLAEyagsirrraayygedreadklirllsPKKRRIFLVPLQVEDDSQVRI 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 494 GT--VSIKS-NLELLRTVRERNPH-AYIIYKPHPDVLVGNRKGNIPTELIAELA-----DYQALDADIIQCIQRADEVHT 564
Cdd:pfam05159 163 HGpfGSVRSaILHMLESFAENAPAdSNIIIKTHPDDRGGIKYRRIIKGYATQLPgfkrrVLYIDDGNLPSLLDHVDGVVT 242
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446501655 565 MTSLSGFEALLHGKQVHCYGLPFYAGWGLTVDEH-----HCPRR-EQKLTIADLIY---QALIVYPTY 623
Cdd:pfam05159 243 VNSTAGFEALLHGKPVVTLGTAWYAGWGLTDQRHlaifwTAPRRpDRVLFGAYLLYlaaVTQINGNFY 310
|
|
| beta_Kdo_transferase_KpsS_like |
cd16438 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like; KpsS is a ... |
368-605 |
1.11e-13 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like; KpsS is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.
Pssm-ID: 319746 Cd Length: 254 Bit Score: 71.47 E-value: 1.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 368 VVWGVKG--EQQWRAEAQRKSLPLWRMEDGFLrssglgsdllpPLSLVLDKRGIYYDATRPSDLEVLLNHSQltlaqkmR 445
Cdd:cd16438 2 VVWNGSKlpQSVAAAAARRLGIPVLFFENGLL-----------PGTTTLDPKGVNYANSVPRDPAFYRNYSI-------D 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 446 AEKLRQRLV--ESKLSKYNLGADFSLPaeakdKKVILVPGQVEDDASIKTGTVSIKSNLELL----RTVRERNPHAYIIY 519
Cdd:cd16438 64 QEPPLKALVrrPLRKKKKKQADPVELP-----ERYVFVPFQVPTDTQILLHSPWIKDMEQLYevlvEAADRLNPDLKIVF 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 520 KPHPdvlvgNRKGNIPTELIAELAD--YQALDADIIQCIQRADEVHTMTSLSGFEALLHGKQVHCYGLPFYAGWGLTvde 597
Cdd:cd16438 139 KEHP-----SDPKSYDYKELYKKHPrvIFANGNDTQELIEGAEAVITINSTVGIEALLLGKPVITLGNAFYNIEGLV--- 210
|
....*...
gi 446501655 598 HHCPRREQ 605
Cdd:cd16438 211 LHARSPQE 218
|
|
| beta_Kdo_transferase_KpsS_like |
cd16438 |
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like; KpsS is a ... |
39-299 |
5.02e-08 |
|
beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsS like; KpsS is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria.
Pssm-ID: 319746 Cd Length: 254 Bit Score: 54.53 E-value: 5.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 39 IAVW-GHRPSAAKPVAIAKAAGKPVIRLEDGFVrsldlgvngepPLSLVVDDCGIYYDASKPSALEKLVQDKAGNTALIs 117
Cdd:cd16438 1 VVVWnGSKLPQSVAAAAARRLGIPVLFFENGLL-----------PGTTTLDPKGVNYANSVPRDPAFYRNYSIDQEPPL- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 118 qareamHTIVTGDLSKYNLAPAFVADESERadIVLVVDQTFNDMSVTYgnagpHE---------FAAMLEAAMAENPQAE 188
Cdd:cd16438 69 ------KALVRRPLRKKKKKQADPVELPER--YVFVPFQVPTDTQILL-----HSpwikdmeqlYEVLVEAADRLNPDLK 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446501655 189 IWVKVHPdvLEGKKTGYFADLRATQRVRLIAENVSpQSLLRHVSQVYVVTSQYGFEALLAGKPVTCFGQPWYAGWGLTDD 268
Cdd:cd16438 136 IVFKEHP--SDPKSYDYKELYKKHPRVIFANGNDT-QELIEGAEAVITINSTVGIEALLLGKPVITLGNAFYNIEGLVLH 212
|
250 260 270
....*....|....*....|....*....|...
gi 446501655 269 RHPQSALLSA--RRGSATLEELFAAAYLRYCRY 299
Cdd:cd16438 213 ARSPQELAAAlaRLLQWQPDRELRRKFLYYLRN 245
|
|
| |
