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Conserved domains on  [gi|446517246|ref|WP_000594592|]
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MULTISPECIES: DUF3955 domain-containing protein [Bacillus cereus group]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3955 super family cl16115
Protein of unknown function (DUF3955); This family of proteins is functionally uncharacterized. ...
 5-62 1.61e-05

Protein of unknown function (DUF3955); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 68 and 87 amino acids in length. There are two completely conserved residues (G and E) that may be functionally important.


The actual alignment was detected with superfamily member pfam13127:

Pssm-ID: 432987  Cd Length: 59  Bit Score: 37.96  E-value: 1.61e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446517246   5 KYVVAISLMILAIISLTIHA-SNSKVGADGFLEEPfFFLVPISYILFLSGIGVLLFGFI 62
Cdd:pfam13127  1 KYRIGLLLLLLGIICLFISNfSGSYVDSDGILHEP-FFLIPIGYLFLFIGIISFVGVAL 58
 
Name Accession Description Interval E-value
DUF3955 pfam13127
Protein of unknown function (DUF3955); This family of proteins is functionally uncharacterized. ...
 5-62 1.61e-05

Protein of unknown function (DUF3955); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 68 and 87 amino acids in length. There are two completely conserved residues (G and E) that may be functionally important.


Pssm-ID: 432987  Cd Length: 59  Bit Score: 37.96  E-value: 1.61e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446517246   5 KYVVAISLMILAIISLTIHA-SNSKVGADGFLEEPfFFLVPISYILFLSGIGVLLFGFI 62
Cdd:pfam13127  1 KYRIGLLLLLLGIICLFISNfSGSYVDSDGILHEP-FFLIPIGYLFLFIGIISFVGVAL 58
 
Name Accession Description Interval E-value
DUF3955 pfam13127
Protein of unknown function (DUF3955); This family of proteins is functionally uncharacterized. ...
 5-62 1.61e-05

Protein of unknown function (DUF3955); This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 68 and 87 amino acids in length. There are two completely conserved residues (G and E) that may be functionally important.


Pssm-ID: 432987  Cd Length: 59  Bit Score: 37.96  E-value: 1.61e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446517246   5 KYVVAISLMILAIISLTIHA-SNSKVGADGFLEEPfFFLVPISYILFLSGIGVLLFGFI 62
Cdd:pfam13127  1 KYRIGLLLLLLGIICLFISNfSGSYVDSDGILHEP-FFLIPIGYLFLFIGIISFVGVAL 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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