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Conserved domains on  [gi|446517987|ref|WP_000595333|]
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MULTISPECIES: ABC-2 transporter permease [Bacillus]

Protein Classification

ABC-2 transporter permease( domain architecture ID 10595261)

ABC-2 transporter permease is the membrane component of an ABC-2 type transporter complex, and is predicted to form homo- or hetero-oligomeric channels, allowing ATP-mediated transport

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ABC2_membrane_5 pfam13346
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 4-194 6.69e-16

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


:

Pssm-ID: 433133  Cd Length: 206  Bit Score: 72.31  E-value: 6.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517987    4 QLILKDFIIQWK----FLIWYILYPIFFYMALTDTENL-FIIMSVIITIGATVKTFEADSKNESEVIVNSLPILRKQIVY 78
Cdd:pfam13346   1 GLILKDFYLIKKqikiLLIILLLLAIIFFIFLNDNFAFiFSILSLVISIILILTSLSYDEKSKWNKFLLTLPVTRKEIVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517987   79 AKYIVAIIILFISVIVGCFTMGMKNGVNLFEFIE---TTMVASISFILIYLSFVLPISFWLAYKKAIFITLFMLIAPTAI 155
Cdd:pfam13346  81 SKYLFSIILGLLGILIGLLLAIIGVLINGNVTISeslYTILIGLFIALIFGAITIPLYFKFGYEKGRIVLFIIFFGLIFL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 446517987  156 ---CTMFFEINLEQIQLYNSLLF----VSSICMFIVSAFVSMKLYE 194
Cdd:pfam13346 161 lvaIFKLNTLELSLIDLSDYILFlillVIILLLYIVSYFISIKIYE 206
 
Name Accession Description Interval E-value
ABC2_membrane_5 pfam13346
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 4-194 6.69e-16

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


Pssm-ID: 433133  Cd Length: 206  Bit Score: 72.31  E-value: 6.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517987    4 QLILKDFIIQWK----FLIWYILYPIFFYMALTDTENL-FIIMSVIITIGATVKTFEADSKNESEVIVNSLPILRKQIVY 78
Cdd:pfam13346   1 GLILKDFYLIKKqikiLLIILLLLAIIFFIFLNDNFAFiFSILSLVISIILILTSLSYDEKSKWNKFLLTLPVTRKEIVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517987   79 AKYIVAIIILFISVIVGCFTMGMKNGVNLFEFIE---TTMVASISFILIYLSFVLPISFWLAYKKAIFITLFMLIAPTAI 155
Cdd:pfam13346  81 SKYLFSIILGLLGILIGLLLAIIGVLINGNVTISeslYTILIGLFIALIFGAITIPLYFKFGYEKGRIVLFIIFFGLIFL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 446517987  156 ---CTMFFEINLEQIQLYNSLLF----VSSICMFIVSAFVSMKLYE 194
Cdd:pfam13346 161 lvaIFKLNTLELSLIDLSDYILFlillVIILLLYIVSYFISIKIYE 206
 
Name Accession Description Interval E-value
ABC2_membrane_5 pfam13346
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 4-194 6.69e-16

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


Pssm-ID: 433133  Cd Length: 206  Bit Score: 72.31  E-value: 6.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517987    4 QLILKDFIIQWK----FLIWYILYPIFFYMALTDTENL-FIIMSVIITIGATVKTFEADSKNESEVIVNSLPILRKQIVY 78
Cdd:pfam13346   1 GLILKDFYLIKKqikiLLIILLLLAIIFFIFLNDNFAFiFSILSLVISIILILTSLSYDEKSKWNKFLLTLPVTRKEIVI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446517987   79 AKYIVAIIILFISVIVGCFTMGMKNGVNLFEFIE---TTMVASISFILIYLSFVLPISFWLAYKKAIFITLFMLIAPTAI 155
Cdd:pfam13346  81 SKYLFSIILGLLGILIGLLLAIIGVLINGNVTISeslYTILIGLFIALIFGAITIPLYFKFGYEKGRIVLFIIFFGLIFL 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 446517987  156 ---CTMFFEINLEQIQLYNSLLF----VSSICMFIVSAFVSMKLYE 194
Cdd:pfam13346 161 lvaIFKLNTLELSLIDLSDYILFlillVIILLLYIVSYFISIKIYE 206
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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