|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15121 |
PRK15121 |
MDR efflux pump AcrAB transcriptional activator RobA; |
6-263 |
7.39e-44 |
|
MDR efflux pump AcrAB transcriptional activator RobA;
Pssm-ID: 185076 [Multi-domain] Cd Length: 289 Bit Score: 150.54 E-value: 7.39e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 6 ILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQ 85
Cdd:PRK15121 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKAAVALRLTSRPILDIALQYRFDSQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 86 QSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLIRQQQKTECRLINFPETPIFG--NSFKYDIE-VSNKSPDEEVKLRR 162
Cdd:PRK15121 86 QTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPIRLGEFTLPEHEFVTLPETPLVGvtQSYSCSLEqISDFRHEMRVQFWR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 163 HHLARCmKNFKTDIYFVSTFEPSTKSVDLLTVetFAGTVCEYADMPKEWTTTR------GLYASFRYEGNWENYPDWVRN 236
Cdd:PRK15121 166 DFLGNA-PTIPPVLYGLHETRPSQEKDDEQEV--FYTTALEPDQADGYVQTGHpvmlqgGEYVMFTYEGLGTGLQEFILT 242
|
250 260
....*....|....*....|....*..
gi 446543662 237 IYLIELPARGLARVNGSDIERFYYNED 263
Cdd:PRK15121 243 VYGTCMPMLNLTRRKGQDIERYYPAED 269
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
21-104 |
5.14e-29 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 105.33 E-value: 5.14e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 21 PISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSP 100
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
|
....
gi 446543662 101 REYR 104
Cdd:smart00342 81 SEYR 84
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
7-106 |
6.44e-25 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 101.00 E-value: 6.44e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 7 LQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQ 86
Cdd:COG4977 212 LARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGSAS 291
|
90 100
....*....|....*....|
gi 446543662 87 SFSREFKKLFGCSPREYRHR 106
Cdd:COG4977 292 HFRRAFRRRFGVSPSAYRRR 311
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
27-106 |
2.51e-20 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 82.64 E-value: 2.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 27 IAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRA-AILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRH 105
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERArRLLLEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
.
gi 446543662 106 R 106
Cdd:pfam12833 81 R 81
|
|
| adjacent_YSIRK |
TIGR04094 |
YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only ... |
11-104 |
9.45e-13 |
|
YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only one protein with the YSIRK variant form of signal peptide (TIGR01168) were examined for conserved genes near that one tagged protein. This protein is found adjacent to at various classes of repetitive or low-complexity YSIRK proteins (whether unique in genome or not), in a range of species (Enterococcus faecalis X98, Ruminococcus torques, Coprobacillus sp. D7, Lysinibacillus fusiformis ZC1, Streptococcus equi subsp. equi 4047, etc). The affliated YSIRK proteins include Streptococcal protective antigen (see ) and proteins with the Rib/alpha/Esp surface antigen repeat (see TIGR02331). The last quarter of this protein has an AraC family helix-turn-helix (HTH)transcriptional regulator domain.
Pssm-ID: 274977 [Multi-domain] Cd Length: 383 Bit Score: 67.39 E-value: 9.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 11 LEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRlTAKSMLDIALSLHFDSQQSFSR 90
Cdd:TIGR04094 291 IQYINLNLYDPLKVEEIAKQFFMSESKLRKLFKKEMGISIQEYISKRKIEEAKYLLR-SQIPVSEVSNELGFYDLSHFSR 369
|
90
....*....|....
gi 446543662 91 EFKKLFGCSPREYR 104
Cdd:TIGR04094 370 TFKKHTGVSPKQYQ 383
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15121 |
PRK15121 |
MDR efflux pump AcrAB transcriptional activator RobA; |
6-263 |
7.39e-44 |
|
MDR efflux pump AcrAB transcriptional activator RobA;
Pssm-ID: 185076 [Multi-domain] Cd Length: 289 Bit Score: 150.54 E-value: 7.39e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 6 ILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQ 85
Cdd:PRK15121 6 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKAAVALRLTSRPILDIALQYRFDSQ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 86 QSFSREFKKLFGCSPREYRHRDYWDLANIFPSFLIRQQQKTECRLINFPETPIFG--NSFKYDIE-VSNKSPDEEVKLRR 162
Cdd:PRK15121 86 QTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPIRLGEFTLPEHEFVTLPETPLVGvtQSYSCSLEqISDFRHEMRVQFWR 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 163 HHLARCmKNFKTDIYFVSTFEPSTKSVDLLTVetFAGTVCEYADMPKEWTTTR------GLYASFRYEGNWENYPDWVRN 236
Cdd:PRK15121 166 DFLGNA-PTIPPVLYGLHETRPSQEKDDEQEV--FYTTALEPDQADGYVQTGHpvmlqgGEYVMFTYEGLGTGLQEFILT 242
|
250 260
....*....|....*....|....*..
gi 446543662 237 IYLIELPARGLARVNGSDIERFYYNED 263
Cdd:PRK15121 243 VYGTCMPMLNLTRRKGQDIERYYPAED 269
|
|
| PRK10219 |
PRK10219 |
superoxide response transcriptional regulator SoxS; |
1-106 |
1.02e-34 |
|
superoxide response transcriptional regulator SoxS;
Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 121.19 E-value: 1.02e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 1 MIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSL 80
Cdd:PRK10219 1 MSHQKIIQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDL 80
|
90 100
....*....|....*....|....*.
gi 446543662 81 HFDSQQSFSREFKKLFGCSPREYRHR 106
Cdd:PRK10219 81 GYVSQQTFSRVFRRQFDRTPSDYRHR 106
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
21-104 |
5.14e-29 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 105.33 E-value: 5.14e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 21 PISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSP 100
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80
|
....
gi 446543662 101 REYR 104
Cdd:smart00342 81 SEYR 84
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
7-106 |
6.44e-25 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 101.00 E-value: 6.44e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 7 LQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQ 86
Cdd:COG4977 212 LARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGSAS 291
|
90 100
....*....|....*....|
gi 446543662 87 SFSREFKKLFGCSPREYRHR 106
Cdd:COG4977 292 HFRRAFRRRFGVSPSAYRRR 311
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
3-106 |
1.38e-22 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 93.69 E-value: 1.38e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 3 RQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHF 82
Cdd:COG2207 150 LLLLLLLLLLLLLLLLLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGF 229
|
90 100
....*....|....*....|....
gi 446543662 83 DSQQSFSREFKKLFGCSPREYRHR 106
Cdd:COG2207 230 SSQSHFSRAFKKRFGVTPSEYRKR 253
|
|
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
27-106 |
2.51e-20 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 82.64 E-value: 2.51e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 27 IAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRA-AILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPREYRH 105
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERArRLLLEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
.
gi 446543662 106 R 106
Cdd:pfam12833 81 R 81
|
|
| PRK11511 |
PRK11511 |
MDR efflux pump AcrAB transcriptional activator MarA; |
7-104 |
2.68e-19 |
|
MDR efflux pump AcrAB transcriptional activator MarA;
Pssm-ID: 236920 [Multi-domain] Cd Length: 127 Bit Score: 81.30 E-value: 2.68e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 7 LQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQ 86
Cdd:PRK11511 11 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQ 90
|
90
....*....|....*...
gi 446543662 87 SFSREFKKLFGCSPREYR 104
Cdd:PRK11511 91 TLTRTFKNYFDVPPHKYR 108
|
|
| AdaA |
COG2169 |
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
3-106 |
1.79e-15 |
|
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];
Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 75.09 E-value: 1.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 3 RQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRlTAKSMLDIALSLHF 82
Cdd:COG2169 82 RADLVARACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLRARQLLQ-TGLSVTDAAYAAGF 160
|
90 100
....*....|....*....|....
gi 446543662 83 DSQQSFSREFKKLFGCSPREYRHR 106
Cdd:COG2169 161 GSLSRFYEAFKKLLGMTPSAYRRG 184
|
|
| adjacent_YSIRK |
TIGR04094 |
YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only ... |
11-104 |
9.45e-13 |
|
YSIRK-targeted surface antigen transcriptional regulator; Bacteria whose genomes encode only one protein with the YSIRK variant form of signal peptide (TIGR01168) were examined for conserved genes near that one tagged protein. This protein is found adjacent to at various classes of repetitive or low-complexity YSIRK proteins (whether unique in genome or not), in a range of species (Enterococcus faecalis X98, Ruminococcus torques, Coprobacillus sp. D7, Lysinibacillus fusiformis ZC1, Streptococcus equi subsp. equi 4047, etc). The affliated YSIRK proteins include Streptococcal protective antigen (see ) and proteins with the Rib/alpha/Esp surface antigen repeat (see TIGR02331). The last quarter of this protein has an AraC family helix-turn-helix (HTH)transcriptional regulator domain.
Pssm-ID: 274977 [Multi-domain] Cd Length: 383 Bit Score: 67.39 E-value: 9.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 11 LEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRlTAKSMLDIALSLHFDSQQSFSR 90
Cdd:TIGR04094 291 IQYINLNLYDPLKVEEIAKQFFMSESKLRKLFKKEMGISIQEYISKRKIEEAKYLLR-SQIPVSEVSNELGFYDLSHFSR 369
|
90
....*....|....
gi 446543662 91 EFKKLFGCSPREYR 104
Cdd:TIGR04094 370 TFKKHTGVSPKQYQ 383
|
|
| ftrA |
PRK09393 |
transcriptional activator FtrA; Provisional |
7-106 |
1.77e-11 |
|
transcriptional activator FtrA; Provisional
Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 63.44 E-value: 1.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 7 LQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQ 86
Cdd:PRK09393 220 LGPLIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWLLRERLARARDLLESSALSIDQIAERAGFGSEE 299
|
90 100
....*....|....*....|
gi 446543662 87 SFSREFKKLFGCSPREYRHR 106
Cdd:PRK09393 300 SLRHHFRRRAATSPAAYRKR 319
|
|
| PRK10371 |
PRK10371 |
transcriptional regulator MelR; |
4-104 |
1.98e-11 |
|
transcriptional regulator MelR;
Pssm-ID: 182416 [Multi-domain] Cd Length: 302 Bit Score: 62.91 E-value: 1.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 4 QKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFD 83
Cdd:PRK10371 190 QFYVSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFR 269
|
90 100
....*....|....*....|.
gi 446543662 84 SQQSFSREFKKLFGCSPREYR 104
Cdd:PRK10371 270 SSSRFYSTFGKYVGMSPQQYR 290
|
|
| PRK13501 |
PRK13501 |
HTH-type transcriptional activator RhaR; |
7-106 |
1.21e-09 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184092 [Multi-domain] Cd Length: 290 Bit Score: 57.61 E-value: 1.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 7 LQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQ 86
Cdd:PRK13501 178 LDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCGFEDSN 257
|
90 100
....*....|....*....|
gi 446543662 87 SFSREFKKLFGCSPREYRHR 106
Cdd:PRK13501 258 YFSAVFTREAGMTPRDYRQR 277
|
|
| PRK09685 |
PRK09685 |
DNA-binding transcriptional activator FeaR; Provisional |
3-106 |
2.53e-08 |
|
DNA-binding transcriptional activator FeaR; Provisional
Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 53.88 E-value: 2.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 3 RQKILQQLLEWIECNLEHP-ISIEDIAQKSGYSRRNiqlLFRNFMHVPL--GEYIRKRRL--CRAAILVRLTAKSMLDIA 77
Cdd:PRK09685 195 RERQFQKVVALIDQSIQEEiLRPEWIAGELGISVRS---LYRLFAEQGLvvAQYIRNRRLdrCADDLRPAADDEKITSIA 271
|
90 100
....*....|....*....|....*....
gi 446543662 78 LSLHFDSQQSFSREFKKLFGCSPREYRHR 106
Cdd:PRK09685 272 YKWGFSDSSHFSTAFKQRFGVSPGEYRRK 300
|
|
| PRK13502 |
PRK13502 |
HTH-type transcriptional activator RhaR; |
3-105 |
3.03e-08 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184093 [Multi-domain] Cd Length: 282 Bit Score: 53.52 E-value: 3.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 3 RQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHF 82
Cdd:PRK13502 174 RETLLDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMISEISMQCGF 253
|
90 100
....*....|....*....|...
gi 446543662 83 DSQQSFSREFKKLFGCSPREYRH 105
Cdd:PRK13502 254 EDSNYFSVVFTRETGMTPSQWRH 276
|
|
| PRK10572 |
PRK10572 |
arabinose operon transcriptional regulator AraC; |
17-106 |
3.89e-08 |
|
arabinose operon transcriptional regulator AraC;
Pssm-ID: 236717 [Multi-domain] Cd Length: 290 Bit Score: 53.05 E-value: 3.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 17 NLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLF 96
Cdd:PRK10572 195 HLASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQLYFSRVFKKCT 274
|
90
....*....|
gi 446543662 97 GCSPREYRHR 106
Cdd:PRK10572 275 GASPSEFRAR 284
|
|
| PRK13503 |
PRK13503 |
HTH-type transcriptional activator RhaS; |
7-105 |
6.01e-08 |
|
HTH-type transcriptional activator RhaS;
Pssm-ID: 184094 [Multi-domain] Cd Length: 278 Bit Score: 52.76 E-value: 6.01e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 7 LQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQ 86
Cdd:PRK13503 173 LNQLLAWLEDHFAEEVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRHSDASVTDIAYRCGFGDSN 252
|
90
....*....|....*....
gi 446543662 87 SFSREFKKLFGCSPREYRH 105
Cdd:PRK13503 253 HFSTLFRREFSWSPRDIRQ 271
|
|
| HTH_AraC |
pfam00165 |
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ... |
69-105 |
7.14e-07 |
|
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.
Pssm-ID: 425497 [Multi-domain] Cd Length: 42 Bit Score: 44.84 E-value: 7.14e-07
10 20 30
....*....|....*....|....*....|....*..
gi 446543662 69 TAKSMLDIALSLHFdSQQSFSREFKKLFGCSPREYRH 105
Cdd:pfam00165 7 TNLTIADIADELGF-SRSYFSRLFKKYTGVTPSQYRH 42
|
|
| PRK13500 |
PRK13500 |
HTH-type transcriptional activator RhaR; |
4-105 |
1.09e-06 |
|
HTH-type transcriptional activator RhaR;
Pssm-ID: 184091 [Multi-domain] Cd Length: 312 Bit Score: 48.94 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 4 QKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFD 83
Cdd:PRK13500 205 ETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFE 284
|
90 100
....*....|....*....|..
gi 446543662 84 SQQSFSREFKKLFGCSPREYRH 105
Cdd:PRK13500 285 DSNYFSVVFTRETGMTPSQWRH 306
|
|
| AraC_E_bind |
smart00871 |
Bacterial transcription activator, effector binding domain; This domain is found in the ... |
127-269 |
1.25e-06 |
|
Bacterial transcription activator, effector binding domain; This domain is found in the probable effector binding domain of a number of different bacterial transcription activators.and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Pssm-ID: 214874 [Multi-domain] Cd Length: 158 Bit Score: 47.09 E-value: 1.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 127 ECRLINFPETPIFGNSFKYDIEvSNKSPDEEVKLRRHHLARCMKNFKTD--IYFVSTFEPSTKSVDLLTVEtFAGTVCEY 204
Cdd:smart00871 1 EVRIVELPAFKVAGLRHRGPNE-DEKIPELWQRLIQWAKELGLLPVGNSgePYGVYYDDPDDTPDGEFRYD-AGVEVSDE 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446543662 205 ADMPKEWTTTR---GLYASFRYEG-NWENYPDWVRNIYLIELPARGLARVNGSDIERFYYNEDFVEKDG 269
Cdd:smart00871 79 VEAPEGVETKTipaGKYAVFTHKGgSYDEIQEAWEAIYGEWLPNSGYELRDAGPDFEVYLNDPPDTDPE 147
|
|
| GyrI-like |
pfam06445 |
GyrI-like small molecule binding domain; This family contains the small molecule binding ... |
127-261 |
3.19e-05 |
|
GyrI-like small molecule binding domain; This family contains the small molecule binding domain of a number of different bacterial transcription activators. This family also contains DNA gyrase inhibitors. The GyrI superfamily contains a diad of the SHS2 module, adapted for small-molecule binding. The GyrI superfamily includes a family of secreted forms that is found only in animals and the bacterial pathogen Leptospira.
Pssm-ID: 428947 Cd Length: 153 Bit Score: 43.17 E-value: 3.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446543662 127 ECRLINFPETPIFGNSFKYDIEVSN-KSPDEEVKLRRHHLARCMKNFKtdIYFVSTFEPSTKSVDLLTVETFAgTVCEYA 205
Cdd:pfam06445 1 EVEIVELPAFRVAGLRHRGPYNEEGiGALWEELCAWASENGLSPAPSP--LIGVSYDDPEVTEDEELRYDAGV-AVPIPV 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 446543662 206 DMPKEWTTTR---GLYASFRYEGNWENYPDWVRNIYLIELPARGLARVNGSDIERfYYN 261
Cdd:pfam06445 78 EGPEGVEELElpgGEYAVFRHKGPYDDLQETYAKIYGEWLPESGYERRDGPSFEI-YLN 135
|
|
| |
