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Conserved domains on  [gi|446545085|ref|WP_000622431|]
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MULTISPECIES: cell division regulator GpsB [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK14127 super family cl30263
cell division regulator GpsB;
4-111 5.15e-46

cell division regulator GpsB;


The actual alignment was detected with superfamily member PRK14127:

Pssm-ID: 357139 [Multi-domain]  Cd Length: 109  Bit Score: 144.00  E-value: 5.15e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446545085   4 DKIKLTAKDILEKEFKTGMRGYQQEEVDKFLDMIIKDYEAFHKEFEQLKQQNARLKRELEE---QKLAVTQVPQQPVQTP 80
Cdd:PRK14127   2 ASIKLTPKDILEKEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDEltkQVSVGASSSSVATTQP 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 446545085  81 VAqpvyNNTNTDILKRLSNLEKAVFGSKLYE 111
Cdd:PRK14127  82 SS----SATNYDILKRLSNLEKHVFGSQLYE 108
 
Name Accession Description Interval E-value
PRK14127 PRK14127
cell division regulator GpsB;
4-111 5.15e-46

cell division regulator GpsB;


Pssm-ID: 237616 [Multi-domain]  Cd Length: 109  Bit Score: 144.00  E-value: 5.15e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446545085   4 DKIKLTAKDILEKEFKTGMRGYQQEEVDKFLDMIIKDYEAFHKEFEQLKQQNARLKRELEE---QKLAVTQVPQQPVQTP 80
Cdd:PRK14127   2 ASIKLTPKDILEKEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDEltkQVSVGASSSSVATTQP 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 446545085  81 VAqpvyNNTNTDILKRLSNLEKAVFGSKLYE 111
Cdd:PRK14127  82 SS----SATNYDILKRLSNLEKHVFGSQLYE 108
DivIVA COG3599
Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle ...
 6-66 5.50e-20

Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442818 [Multi-domain]  Cd Length: 125  Bit Score: 78.36  E-value: 5.50e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446545085   6 IKLTAKDILEKEFKTGMRGYQQEEVDKFLDMIIKDYEAFHKEFEQLKQQNARLKRELEEQK 66
Cdd:COG3599    1 MKLTPLDIRNKEFKKGFRGYDEDEVDEFLDEVAEDYERLIRENKELKEKLEELEEELEEYR 61
DivIVA pfam05103
DivIVA protein; The Bacillus subtilis divIVA1 mutation causes misplacement of the septum ...
 8-66 4.63e-16

DivIVA protein; The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.


Pssm-ID: 428304 [Multi-domain]  Cd Length: 131  Bit Score: 68.36  E-value: 4.63e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 446545085    8 LTAKDILEKEFKTGMRGYQQEEVDKFLDMIIKDYEAFHKEFEQLKQQNARLKRELEEQK 66
Cdd:pfam05103   1 LTPLDIQNKEFKKKMRGYDPDEVDEFLDQVAEDYEALIRENAELKEKIEELEEKLAHYK 59
DivI1A_domain TIGR03544
DivIVA domain; This model describes a domain found in Bacillus subtilis cell division ...
 8-41 1.47e-13

DivIVA domain; This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.


Pssm-ID: 274639 [Multi-domain]  Cd Length: 34  Bit Score: 59.36  E-value: 1.47e-13
                          10        20        30
                  ....*....|....*....|....*....|....
gi 446545085    8 LTAKDILEKEFKTGMRGYQQEEVDKFLDMIIKDY 41
Cdd:TIGR03544   1 LTPEDIRNKRFKKKLRGYDAAEVDAFLDRVADDL 34
 
Name Accession Description Interval E-value
PRK14127 PRK14127
cell division regulator GpsB;
4-111 5.15e-46

cell division regulator GpsB;


Pssm-ID: 237616 [Multi-domain]  Cd Length: 109  Bit Score: 144.00  E-value: 5.15e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446545085   4 DKIKLTAKDILEKEFKTGMRGYQQEEVDKFLDMIIKDYEAFHKEFEQLKQQNARLKRELEE---QKLAVTQVPQQPVQTP 80
Cdd:PRK14127   2 ASIKLTPKDILEKEFKTSMRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDEltkQVSVGASSSSVATTQP 81

                         90       100       110
                 ....*....|....*....|....*....|.
gi 446545085  81 VAqpvyNNTNTDILKRLSNLEKAVFGSKLYE 111
Cdd:PRK14127  82 SS----SATNYDILKRLSNLEKHVFGSQLYE 108
DivIVA COG3599
Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle ...
 6-66 5.50e-20

Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442818 [Multi-domain]  Cd Length: 125  Bit Score: 78.36  E-value: 5.50e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446545085   6 IKLTAKDILEKEFKTGMRGYQQEEVDKFLDMIIKDYEAFHKEFEQLKQQNARLKRELEEQK 66
Cdd:COG3599    1 MKLTPLDIRNKEFKKGFRGYDEDEVDEFLDEVAEDYERLIRENKELKEKLEELEEELEEYR 61
DivIVA pfam05103
DivIVA protein; The Bacillus subtilis divIVA1 mutation causes misplacement of the septum ...
 8-66 4.63e-16

DivIVA protein; The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.


Pssm-ID: 428304 [Multi-domain]  Cd Length: 131  Bit Score: 68.36  E-value: 4.63e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 446545085    8 LTAKDILEKEFKTGMRGYQQEEVDKFLDMIIKDYEAFHKEFEQLKQQNARLKRELEEQK 66
Cdd:pfam05103   1 LTPLDIQNKEFKKKMRGYDPDEVDEFLDQVAEDYEALIRENAELKEKIEELEEKLAHYK 59
DivI1A_domain TIGR03544
DivIVA domain; This model describes a domain found in Bacillus subtilis cell division ...
 8-41 1.47e-13

DivIVA domain; This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.


Pssm-ID: 274639 [Multi-domain]  Cd Length: 34  Bit Score: 59.36  E-value: 1.47e-13
                          10        20        30
                  ....*....|....*....|....*....|....
gi 446545085    8 LTAKDILEKEFKTGMRGYQQEEVDKFLDMIIKDY 41
Cdd:TIGR03544   1 LTPEDIRNKRFKKKLRGYDAAEVDAFLDRVADDL 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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