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Conserved domains on  [gi|446546763|ref|WP_000624109|]
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MULTISPECIES: type-F conjugative transfer system pilin chaperone TraQ [Gammaproteobacteria]

Protein Classification

PRK13727 family protein( domain architecture ID 10014380)

PRK13727 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK13727 PRK13727
conjugal transfer pilin chaperone TraQ; Provisional
 2-81 5.99e-44

conjugal transfer pilin chaperone TraQ; Provisional


:

Pssm-ID: 237483  Cd Length: 80  Bit Score: 136.87  E-value: 5.99e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446546763  2 ISKRRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYQVLDAWIARVSREEREALEARQQA 81
Cdd:PRK13727  1 ISKRRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYRVLDAWIARVSREEREALEARQQA 80
 
Name Accession Description Interval E-value
PRK13727 PRK13727
conjugal transfer pilin chaperone TraQ; Provisional
 2-81 5.99e-44

conjugal transfer pilin chaperone TraQ; Provisional


Pssm-ID: 237483  Cd Length: 80  Bit Score: 136.87  E-value: 5.99e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446546763  2 ISKRRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYQVLDAWIARVSREEREALEARQQA 81
Cdd:PRK13727  1 ISKRRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYRVLDAWIARVSREEREALEARQQA 80
TraQ TIGR02741
type-F conjugative transfer system pilin chaperone TraQ; This protein makes a specific ...
 2-81 1.84e-43

type-F conjugative transfer system pilin chaperone TraQ; This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.


Pssm-ID: 131788  Cd Length: 80  Bit Score: 135.79  E-value: 1.84e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446546763   2 ISKRRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYQVLDAWIARVSREEREALEARQQA 81
Cdd:TIGR02741  1 MRKFRFSLPEFDITGLWVFSLGIWFHIVSRLVYRKPWMAFFLAELIAVILVLWGAYRVLDAWIARVSREERDALEARQEA 80
TraQ pfam09679
Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a ...
 5-81 2.42e-34

Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.


Pssm-ID: 370613  Cd Length: 85  Bit Score: 112.67  E-value: 2.42e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446546763   5 RRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYQVLDAWIARVSREEREALEARQQA 81
Cdd:pfam09679  2 RKFRFPALDVTGMWVLSLGVWFHIVARLVYRLPEMAVGLAEIIAVGLVLIGGYRILDAWIARVADERLAPEKDAEKA 78
 
Name Accession Description Interval E-value
PRK13727 PRK13727
conjugal transfer pilin chaperone TraQ; Provisional
 2-81 5.99e-44

conjugal transfer pilin chaperone TraQ; Provisional


Pssm-ID: 237483  Cd Length: 80  Bit Score: 136.87  E-value: 5.99e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446546763  2 ISKRRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYQVLDAWIARVSREEREALEARQQA 81
Cdd:PRK13727  1 ISKRRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYRVLDAWIARVSREEREALEARQQA 80
TraQ TIGR02741
type-F conjugative transfer system pilin chaperone TraQ; This protein makes a specific ...
 2-81 1.84e-43

type-F conjugative transfer system pilin chaperone TraQ; This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.


Pssm-ID: 131788  Cd Length: 80  Bit Score: 135.79  E-value: 1.84e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446546763   2 ISKRRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYQVLDAWIARVSREEREALEARQQA 81
Cdd:TIGR02741  1 MRKFRFSLPEFDITGLWVFSLGIWFHIVSRLVYRKPWMAFFLAELIAVILVLWGAYRVLDAWIARVSREERDALEARQEA 80
TraQ pfam09679
Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a ...
 5-81 2.42e-34

Type-F conjugative transfer system pilin chaperone (TraQ); This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.


Pssm-ID: 370613  Cd Length: 85  Bit Score: 112.67  E-value: 2.42e-34
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446546763   5 RRFSLPRLDITGMWVFSLGVWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYQVLDAWIARVSREEREALEARQQA 81
Cdd:pfam09679  2 RKFRFPALDVTGMWVLSLGVWFHIVARLVYRLPEMAVGLAEIIAVGLVLIGGYRILDAWIARVADERLAPEKDAEKA 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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