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Conserved domains on  [gi|446546879|ref|WP_000624225|]
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MULTISPECIES: tail fiber protein [Salmonella]

Protein Classification

DUF3751 domain-containing protein( domain architecture ID 13428936)

DUF3751 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_fiber_2 pfam03406
Phage tail fibre repeat; This repeat is found in the tail fibres of phage. For example protein ...
 8-45 7.87e-12

Phage tail fibre repeat; This repeat is found in the tail fibres of phage. For example protein K. The repeats are about 40 residues long.


:

Pssm-ID: 427282 [Multi-domain]  Cd Length: 38  Bit Score: 58.48  E-value: 7.87e-12
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 446546879    8 SLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVRTK 45
Cdd:pfam03406   1 TLTQKGIVQLSSATNSTSETLAATPKAVKTAYDNANAA 38
COG5301 super family cl34977
Phage-related tail fiber protein [Mobilome: prophages, transposons];
4-89 1.10e-07

Phage-related tail fiber protein [Mobilome: prophages, transposons];


The actual alignment was detected with superfamily member COG5301:

Pssm-ID: 444101 [Multi-domain]  Cd Length: 254  Bit Score: 51.59  E-value: 1.10e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446546879   4 LEDASLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVRTKAPLDSPAFTGTPTTPTPpgdAKGLQTTNAEFVRKLIAA 83
Cdd:COG5301  165 HPDATLTEKGFVQLSSATDSNSETLAATPKAVKTAYDLADTAFVAASGNAAGTAATAAA---AGGLTLNAAALSVSTYSA 241


                 ....*.
gi 446546879  84 LVGSVL 89
Cdd:COG5301  242 TAGAVL 247
 
Name Accession Description Interval E-value
Phage_fiber_2 pfam03406
Phage tail fibre repeat; This repeat is found in the tail fibres of phage. For example protein ...
 8-45 7.87e-12

Phage tail fibre repeat; This repeat is found in the tail fibres of phage. For example protein K. The repeats are about 40 residues long.


Pssm-ID: 427282 [Multi-domain]  Cd Length: 38  Bit Score: 58.48  E-value: 7.87e-12
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 446546879    8 SLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVRTK 45
Cdd:pfam03406   1 TLTQKGIVQLSSATNSTSETLAATPKAVKTAYDNANAA 38
COG5301 COG5301
Phage-related tail fiber protein [Mobilome: prophages, transposons];
4-89 1.10e-07

Phage-related tail fiber protein [Mobilome: prophages, transposons];


Pssm-ID: 444101 [Multi-domain]  Cd Length: 254  Bit Score: 51.59  E-value: 1.10e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446546879   4 LEDASLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVRTKAPLDSPAFTGTPTTPTPpgdAKGLQTTNAEFVRKLIAA 83
Cdd:COG5301  165 HPDATLTEKGFVQLSSATDSNSETLAATPKAVKTAYDLADTAFVAASGNAAGTAATAAA---AGGLTLNAAALSVSTYSA 241


                 ....*.
gi 446546879  84 LVGSVL 89
Cdd:COG5301  242 TAGAVL 247
 
Name Accession Description Interval E-value
Phage_fiber_2 pfam03406
Phage tail fibre repeat; This repeat is found in the tail fibres of phage. For example protein ...
 8-45 7.87e-12

Phage tail fibre repeat; This repeat is found in the tail fibres of phage. For example protein K. The repeats are about 40 residues long.


Pssm-ID: 427282 [Multi-domain]  Cd Length: 38  Bit Score: 58.48  E-value: 7.87e-12
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 446546879    8 SLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVRTK 45
Cdd:pfam03406   1 TLTQKGIVQLSSATNSTSETLAATPKAVKTAYDNANAA 38
COG5301 COG5301
Phage-related tail fiber protein [Mobilome: prophages, transposons];
4-89 1.10e-07

Phage-related tail fiber protein [Mobilome: prophages, transposons];


Pssm-ID: 444101 [Multi-domain]  Cd Length: 254  Bit Score: 51.59  E-value: 1.10e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446546879   4 LEDASLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVRTKAPLDSPAFTGTPTTPTPpgdAKGLQTTNAEFVRKLIAA 83
Cdd:COG5301  165 HPDATLTEKGFVQLSSATDSNSETLAATPKAVKTAYDLADTAFVAASGNAAGTAATAAA---AGGLTLNAAALSVSTYSA 241


                 ....*.
gi 446546879  84 LVGSVL 89
Cdd:COG5301  242 TAGAVL 247
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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