NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446551666|ref|WP_000629012|]
View 

MULTISPECIES: DUF2535 family protein [Bacillus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF2535 super family cl11345
Protein of unknown function (DUF2535); This family of proteins with unknown function appears ...
 1-83 2.67e-23

Protein of unknown function (DUF2535); This family of proteins with unknown function appears to be restricted to Bacillus spp.


The actual alignment was detected with superfamily member pfam10751:

Pssm-ID: 313866  Cd Length: 83  Bit Score: 84.36  E-value: 2.67e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446551666   1 MITKSFYFTHSTGDCIKIFEIPVLQAQHPLSFLIQSRLQLFIAKIQKQKHPRFSYSFREYLQNCLKWNDYLNVYKTNTLE 80
Cdd:pfam10751  1 MLLKSLEFKNMDGQKVKVTEIPVLEEDNPHFFMLHARLQAFIKKVYNSKSKKKVYSFREYLKRVLKWSDYEQIFKEEVLK 80


                 ...
gi 446551666  81 KNA 83
Cdd:pfam10751 81 HNA 83
 
Name Accession Description Interval E-value
DUF2535 pfam10751
Protein of unknown function (DUF2535); This family of proteins with unknown function appears ...
 1-83 2.67e-23

Protein of unknown function (DUF2535); This family of proteins with unknown function appears to be restricted to Bacillus spp.


Pssm-ID: 313866  Cd Length: 83  Bit Score: 84.36  E-value: 2.67e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446551666   1 MITKSFYFTHSTGDCIKIFEIPVLQAQHPLSFLIQSRLQLFIAKIQKQKHPRFSYSFREYLQNCLKWNDYLNVYKTNTLE 80
Cdd:pfam10751  1 MLLKSLEFKNMDGQKVKVTEIPVLEEDNPHFFMLHARLQAFIKKVYNSKSKKKVYSFREYLKRVLKWSDYEQIFKEEVLK 80


                 ...
gi 446551666  81 KNA 83
Cdd:pfam10751 81 HNA 83
 
Name Accession Description Interval E-value
DUF2535 pfam10751
Protein of unknown function (DUF2535); This family of proteins with unknown function appears ...
 1-83 2.67e-23

Protein of unknown function (DUF2535); This family of proteins with unknown function appears to be restricted to Bacillus spp.


Pssm-ID: 313866  Cd Length: 83  Bit Score: 84.36  E-value: 2.67e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446551666   1 MITKSFYFTHSTGDCIKIFEIPVLQAQHPLSFLIQSRLQLFIAKIQKQKHPRFSYSFREYLQNCLKWNDYLNVYKTNTLE 80
Cdd:pfam10751  1 MLLKSLEFKNMDGQKVKVTEIPVLEEDNPHFFMLHARLQAFIKKVYNSKSKKKVYSFREYLKRVLKWSDYEQIFKEEVLK 80


                 ...
gi 446551666  81 KNA 83
Cdd:pfam10751 81 HNA 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH