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Conserved domains on  [gi|446568381|ref|WP_000645727|]
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MULTISPECIES: phenol-soluble modulin export ABC transporter permease subunit PmtB [Staphylococcus]

Protein Classification

ABC-2 transporter permease( domain architecture ID 10595261)

ABC-2 transporter permease is the membrane component of an ABC-2 type transporter complex, and is predicted to form homo- or hetero-oligomeric channels, allowing ATP-mediated transport

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ABC2_membrane_5 pfam13346
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 4-197 1.87e-11

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


:

Pssm-ID: 433133  Cd Length: 206  Bit Score: 61.14  E-value: 1.87e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446568381    4 LLIRNFKLRRYTLIIYVLLLTLYPFYIMLDSTKFFYLLQSFISPTILIIWILdagHLFRLNRRlggNDSYYFYMSLPVSK 83
Cdd:pfam13346   2 LILKDFYLIKKQIKILLIILLLLAIIFFIFLNDNFAFIFSILSLVISIILIL---TSLSYDEK---SKWNKFLLTLPVTR 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446568381   84 KQLLNANYITCIVLTLIGTLVISLYAYEADVIEPNSIYFSTAYAFVISNFLSIPIAFSQFTELRRVKVPYGIYVFTIIIL 163
Cdd:pfam13346  76 KEIVISKYLFSIILGLLGILIGLLLAIIGVLINGNVTISESLYTILIGLFIALIFGAITIPLYFKFGYEKGRIVLFIIFF 155

                         170       180       190
                  ....*....|....*....|....*....|....
gi 446568381  164 VPFLFSIAIVLVNYFVLSQSSFPDLYSYILNIGF 197
Cdd:pfam13346 156 GLIFLLVAIFKLNTLELSLIDLSDYILFLILLVI 189
 
Name Accession Description Interval E-value
ABC2_membrane_5 pfam13346
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 4-197 1.87e-11

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


Pssm-ID: 433133  Cd Length: 206  Bit Score: 61.14  E-value: 1.87e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446568381    4 LLIRNFKLRRYTLIIYVLLLTLYPFYIMLDSTKFFYLLQSFISPTILIIWILdagHLFRLNRRlggNDSYYFYMSLPVSK 83
Cdd:pfam13346   2 LILKDFYLIKKQIKILLIILLLLAIIFFIFLNDNFAFIFSILSLVISIILIL---TSLSYDEK---SKWNKFLLTLPVTR 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446568381   84 KQLLNANYITCIVLTLIGTLVISLYAYEADVIEPNSIYFSTAYAFVISNFLSIPIAFSQFTELRRVKVPYGIYVFTIIIL 163
Cdd:pfam13346  76 KEIVISKYLFSIILGLLGILIGLLLAIIGVLINGNVTISESLYTILIGLFIALIFGAITIPLYFKFGYEKGRIVLFIIFF 155

                         170       180       190
                  ....*....|....*....|....*....|....
gi 446568381  164 VPFLFSIAIVLVNYFVLSQSSFPDLYSYILNIGF 197
Cdd:pfam13346 156 GLIFLLVAIFKLNTLELSLIDLSDYILFLILLVI 189
 
Name Accession Description Interval E-value
ABC2_membrane_5 pfam13346
ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter ...
 4-197 1.87e-11

ABC-2 family transporter protein; This family is related to the ABC-2 membrane transporter family pfam01061.


Pssm-ID: 433133  Cd Length: 206  Bit Score: 61.14  E-value: 1.87e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446568381    4 LLIRNFKLRRYTLIIYVLLLTLYPFYIMLDSTKFFYLLQSFISPTILIIWILdagHLFRLNRRlggNDSYYFYMSLPVSK 83
Cdd:pfam13346   2 LILKDFYLIKKQIKILLIILLLLAIIFFIFLNDNFAFIFSILSLVISIILIL---TSLSYDEK---SKWNKFLLTLPVTR 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446568381   84 KQLLNANYITCIVLTLIGTLVISLYAYEADVIEPNSIYFSTAYAFVISNFLSIPIAFSQFTELRRVKVPYGIYVFTIIIL 163
Cdd:pfam13346  76 KEIVISKYLFSIILGLLGILIGLLLAIIGVLINGNVTISESLYTILIGLFIALIFGAITIPLYFKFGYEKGRIVLFIIFF 155

                         170       180       190
                  ....*....|....*....|....*....|....
gi 446568381  164 VPFLFSIAIVLVNYFVLSQSSFPDLYSYILNIGF 197
Cdd:pfam13346 156 GLIFLLVAIFKLNTLELSLIDLSDYILFLILLVI 189
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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