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Conserved domains on  [gi|446571551|ref|WP_000648897|]
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MULTISPECIES: hypothetical protein [Gammaproteobacteria]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TerS_not_xtmA super family cl46063
phage terminase small subunit; Members of this family are phage terminase small subunit ...
 34-66 1.84e-03

phage terminase small subunit; Members of this family are phage terminase small subunit proteins, based on adjacency to terminase large subunit proteins, and on a small N-terminal homology domain, described by PF10668, about 67 amino acids in length, shared with TerS from PBSX (XtmA) and from phage related to PBSX. Terminase small subunits related to XtmA of defective prophage PBSX have a C-terminal PF03592 domain, accounting for most of the length of those proteins. Members of this family differ from XtmA-like TerS over most of the their lengths, C-terminal to the PF10668 domain, and show no trace of homology to PF03592.


The actual alignment was detected with superfamily member NF040601:

Pssm-ID: 480403  Cd Length: 229  Bit Score: 35.36  E-value: 1.84e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 446571551  34 AHEILL-VRGLIPLTDIqlANRLDVDERTIRKWK 66
Cdd:NF040601  12 AFEIYLeSGGKITLKEI--AEELGVSEKTIRKWK 43
 
Name Accession Description Interval E-value
TerS_not_xtmA NF040601
phage terminase small subunit; Members of this family are phage terminase small subunit ...
 34-66 1.84e-03

phage terminase small subunit; Members of this family are phage terminase small subunit proteins, based on adjacency to terminase large subunit proteins, and on a small N-terminal homology domain, described by PF10668, about 67 amino acids in length, shared with TerS from PBSX (XtmA) and from phage related to PBSX. Terminase small subunits related to XtmA of defective prophage PBSX have a C-terminal PF03592 domain, accounting for most of the length of those proteins. Members of this family differ from XtmA-like TerS over most of the their lengths, C-terminal to the PF10668 domain, and show no trace of homology to PF03592.


Pssm-ID: 468574  Cd Length: 229  Bit Score: 35.36  E-value: 1.84e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 446571551  34 AHEILL-VRGLIPLTDIqlANRLDVDERTIRKWK 66
Cdd:NF040601  12 AFEIYLeSGGKITLKEI--AEELGVSEKTIRKWK 43
YiaG COG2944
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
32-71 5.43e-03

DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];


Pssm-ID: 442187 [Multi-domain]  Cd Length: 64  Bit Score: 32.60  E-value: 5.43e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 446571551 32 PTAHEILLVRGLIPLTDIQLANRLDVDERTIRKWKTGQTR 71
Cdd:COG2944   6 LTPEEIRALRERLGLSQAEFAALLGVSVSTVRRWEQGRRK 45
 
Name Accession Description Interval E-value
TerS_not_xtmA NF040601
phage terminase small subunit; Members of this family are phage terminase small subunit ...
 34-66 1.84e-03

phage terminase small subunit; Members of this family are phage terminase small subunit proteins, based on adjacency to terminase large subunit proteins, and on a small N-terminal homology domain, described by PF10668, about 67 amino acids in length, shared with TerS from PBSX (XtmA) and from phage related to PBSX. Terminase small subunits related to XtmA of defective prophage PBSX have a C-terminal PF03592 domain, accounting for most of the length of those proteins. Members of this family differ from XtmA-like TerS over most of the their lengths, C-terminal to the PF10668 domain, and show no trace of homology to PF03592.


Pssm-ID: 468574  Cd Length: 229  Bit Score: 35.36  E-value: 1.84e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 446571551  34 AHEILL-VRGLIPLTDIqlANRLDVDERTIRKWK 66
Cdd:NF040601  12 AFEIYLeSGGKITLKEI--AEELGVSEKTIRKWK 43
YiaG COG2944
DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];
32-71 5.43e-03

DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription];


Pssm-ID: 442187 [Multi-domain]  Cd Length: 64  Bit Score: 32.60  E-value: 5.43e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|
gi 446571551 32 PTAHEILLVRGLIPLTDIQLANRLDVDERTIRKWKTGQTR 71
Cdd:COG2944   6 LTPEEIRALRERLGLSQAEFAALLGVSVSTVRRWEQGRRK 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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