NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446572512|ref|WP_000649858|]
View 

MULTISPECIES: YihD family protein [Salmonella]

Protein Classification

YihD family protein( domain architecture ID 10006908)

YihD family protein is a DUF1040 domain-containing protein; similar to Haemophilus influenzae protein HI_0845

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
YihD COG3084
Uncharacterized conserved protein YihD, DUF1040 family [Function unknown];
1-89 5.02e-58

Uncharacterized conserved protein YihD, DUF1040 family [Function unknown];


:

Pssm-ID: 442318  Cd Length: 89  Bit Score: 172.47  E-value: 5.02e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446572512  1 MKCKRLNEVIELLQPAWQKEPDLNLTQFLQKLAKESGFDGKLEDLTDDILIYHLKMRDSAKDAAIPGIQKDYEEDFKTAL 80
Cdd:COG3084   1 MKCHRLNELIELLQPAWQKEPDLNLLQFLQKLAEEAGFDGPLSELTDDVLIYHLKMRGSDKDEMIPGLKKDYEDDFKTAL 80


                ....*....
gi 446572512 81 LRARGVIKE 89
Cdd:COG3084  81 LRARGIIKD 89
 
Name Accession Description Interval E-value
YihD COG3084
Uncharacterized conserved protein YihD, DUF1040 family [Function unknown];
1-89 5.02e-58

Uncharacterized conserved protein YihD, DUF1040 family [Function unknown];


Pssm-ID: 442318  Cd Length: 89  Bit Score: 172.47  E-value: 5.02e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446572512  1 MKCKRLNEVIELLQPAWQKEPDLNLTQFLQKLAKESGFDGKLEDLTDDILIYHLKMRDSAKDAAIPGIQKDYEEDFKTAL 80
Cdd:COG3084   1 MKCHRLNELIELLQPAWQKEPDLNLLQFLQKLAEEAGFDGPLSELTDDVLIYHLKMRGSDKDEMIPGLKKDYEDDFKTAL 80


                ....*....
gi 446572512 81 LRARGVIKE 89
Cdd:COG3084  81 LRARGIIKD 89
DUF1040 pfam06288
Protein of unknown function (DUF1040); This family consists of several bacterial YihD proteins ...
 1-86 1.72e-52

Protein of unknown function (DUF1040); This family consists of several bacterial YihD proteins of unknown function.


Pssm-ID: 428867  Cd Length: 86  Bit Score: 158.27  E-value: 1.72e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446572512   1 MKCKRLNEVIELLQPAWQKEPDLNLTQFLQKLAKESGFDGKLEDLTDDILIYHLKMRDSAKDAAIPGIQKDYEEDFKTAL 80
Cdd:pfam06288  1 MKCHRINELLELLQPAWQKEPDLNLLQFLQKLAEEAGFEGPLEDLTDDVLIYHLKMRGSDKTEMIPGLKKDYEEDFKTAL 80


                 ....*.
gi 446572512  81 LRARGV 86
Cdd:pfam06288 81 LRARGI 86
 
Name Accession Description Interval E-value
YihD COG3084
Uncharacterized conserved protein YihD, DUF1040 family [Function unknown];
1-89 5.02e-58

Uncharacterized conserved protein YihD, DUF1040 family [Function unknown];


Pssm-ID: 442318  Cd Length: 89  Bit Score: 172.47  E-value: 5.02e-58
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446572512  1 MKCKRLNEVIELLQPAWQKEPDLNLTQFLQKLAKESGFDGKLEDLTDDILIYHLKMRDSAKDAAIPGIQKDYEEDFKTAL 80
Cdd:COG3084   1 MKCHRLNELIELLQPAWQKEPDLNLLQFLQKLAEEAGFDGPLSELTDDVLIYHLKMRGSDKDEMIPGLKKDYEDDFKTAL 80


                ....*....
gi 446572512 81 LRARGVIKE 89
Cdd:COG3084  81 LRARGIIKD 89
DUF1040 pfam06288
Protein of unknown function (DUF1040); This family consists of several bacterial YihD proteins ...
 1-86 1.72e-52

Protein of unknown function (DUF1040); This family consists of several bacterial YihD proteins of unknown function.


Pssm-ID: 428867  Cd Length: 86  Bit Score: 158.27  E-value: 1.72e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446572512   1 MKCKRLNEVIELLQPAWQKEPDLNLTQFLQKLAKESGFDGKLEDLTDDILIYHLKMRDSAKDAAIPGIQKDYEEDFKTAL 80
Cdd:pfam06288  1 MKCHRINELLELLQPAWQKEPDLNLLQFLQKLAEEAGFEGPLEDLTDDVLIYHLKMRGSDKTEMIPGLKKDYEEDFKTAL 80


                 ....*.
gi 446572512  81 LRARGV 86
Cdd:pfam06288 81 LRARGI 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH