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Conserved domains on  [gi|446573074|ref|WP_000650420|]
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MULTISPECIES: DUF4179 domain-containing protein [Bacillus]

Protein Classification

DUF4179 domain-containing protein( domain architecture ID 10606299)

DUF4179 domain-containing protein similar to the conserved domain protein from Bacillus Anthracis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4179 pfam13786
Domain of unknown function (DUF4179);
103-201 2.24e-08

Domain of unknown function (DUF4179);


:

Pssm-ID: 463985  Cd Length: 93  Bit Score: 50.77  E-value: 2.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446573074  103 KKSKCFIYTAVAAAALFTtamipqVQVAATNVASYFSdAITNDKVVNEGIKDENGITQDMMKNGKYIPIDEKITDQGITV 182
Cdd:pfam13786   1 KKKKKLKKAAAAAAALIL------LLGGSGLVSPAFA-AYVNIPIIGSIFELISDDKGLNGENEYSQEVNKSVTDNGITV 73

                          90
                  ....*....|....*....
gi 446573074  183 HLKELFIADSRISVHYRME 201
Cdd:pfam13786  74 TIDEVIADGNRLIISYTVK 92
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
1-47 2.12e-07

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


:

Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 49.85  E-value: 2.12e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446573074   1 MKCYDI-GFIQTYIDGELSHDIRKEFTKHLDTCEACQDLLVEISKLNQ 47
Cdd:COG5662    1 MTCDDVeELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRRLRA 48
 
Name Accession Description Interval E-value
DUF4179 pfam13786
Domain of unknown function (DUF4179);
103-201 2.24e-08

Domain of unknown function (DUF4179);


Pssm-ID: 463985  Cd Length: 93  Bit Score: 50.77  E-value: 2.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446573074  103 KKSKCFIYTAVAAAALFTtamipqVQVAATNVASYFSdAITNDKVVNEGIKDENGITQDMMKNGKYIPIDEKITDQGITV 182
Cdd:pfam13786   1 KKKKKLKKAAAAAAALIL------LLGGSGLVSPAFA-AYVNIPIIGSIFELISDDKGLNGENEYSQEVNKSVTDNGITV 73

                          90
                  ....*....|....*....
gi 446573074  183 HLKELFIADSRISVHYRME 201
Cdd:pfam13786  74 TIDEVIADGNRLIISYTVK 92
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
1-47 2.12e-07

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 49.85  E-value: 2.12e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446573074   1 MKCYDI-GFIQTYIDGELSHDIRKEFTKHLDTCEACQDLLVEISKLNQ 47
Cdd:COG5662    1 MTCDDVeELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRRLRA 48
zf-HC2 pfam13490
Putative zinc-finger; This is a putative zinc-finger found in some anti-sigma factor proteins.
 12-36 1.15e-05

Putative zinc-finger; This is a putative zinc-finger found in some anti-sigma factor proteins.


Pssm-ID: 463895 [Multi-domain]  Cd Length: 35  Bit Score: 41.76  E-value: 1.15e-05
                          10        20
                  ....*....|....*....|....*
gi 446573074   12 YIDGELSHDIRKEFTKHLDTCEACQ 36
Cdd:pfam13490  11 YLDGELSPEERARVEAHLAGCPACR 35
anti_SigH_actin TIGR02949
anti-sigma factor, TIGR02949 family; This group of anti-sigma factors are associated in an ...
 3-39 1.28e-04

anti-sigma factor, TIGR02949 family; This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria. [Transcription, Transcription factors]


Pssm-ID: 188261  Cd Length: 84  Bit Score: 40.13  E-value: 1.28e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 446573074    3 CYD-IGFIQTYIDGELSHDIRKEFTKHLDTCEACQDLL 39
Cdd:TIGR02949   9 CAEvIDHLYEFLDGECTEDDAERLRRHLAACPECLREY 46
 
Name Accession Description Interval E-value
DUF4179 pfam13786
Domain of unknown function (DUF4179);
103-201 2.24e-08

Domain of unknown function (DUF4179);


Pssm-ID: 463985  Cd Length: 93  Bit Score: 50.77  E-value: 2.24e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446573074  103 KKSKCFIYTAVAAAALFTtamipqVQVAATNVASYFSdAITNDKVVNEGIKDENGITQDMMKNGKYIPIDEKITDQGITV 182
Cdd:pfam13786   1 KKKKKLKKAAAAAAALIL------LLGGSGLVSPAFA-AYVNIPIIGSIFELISDDKGLNGENEYSQEVNKSVTDNGITV 73

                          90
                  ....*....|....*....
gi 446573074  183 HLKELFIADSRISVHYRME 201
Cdd:pfam13786  74 TIDEVIADGNRLIISYTVK 92
RsiW COG5662
Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];
1-47 2.12e-07

Transmembrane transcriptional regulator RsiW (anti-sigma-W factor) [Transcription];


Pssm-ID: 444381 [Multi-domain]  Cd Length: 155  Bit Score: 49.85  E-value: 2.12e-07
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446573074   1 MKCYDI-GFIQTYIDGELSHDIRKEFTKHLDTCEACQDLLVEISKLNQ 47
Cdd:COG5662    1 MTCDDVeELLHAYLDGELSPEERAEVEAHLATCPACAARLAELRRLRA 48
zf-HC2 pfam13490
Putative zinc-finger; This is a putative zinc-finger found in some anti-sigma factor proteins.
 12-36 1.15e-05

Putative zinc-finger; This is a putative zinc-finger found in some anti-sigma factor proteins.


Pssm-ID: 463895 [Multi-domain]  Cd Length: 35  Bit Score: 41.76  E-value: 1.15e-05
                          10        20
                  ....*....|....*....|....*
gi 446573074   12 YIDGELSHDIRKEFTKHLDTCEACQ 36
Cdd:pfam13490  11 YLDGELSPEERARVEAHLAGCPACR 35
anti_SigH_actin TIGR02949
anti-sigma factor, TIGR02949 family; This group of anti-sigma factors are associated in an ...
 3-39 1.28e-04

anti-sigma factor, TIGR02949 family; This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria. [Transcription, Transcription factors]


Pssm-ID: 188261  Cd Length: 84  Bit Score: 40.13  E-value: 1.28e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 446573074    3 CYD-IGFIQTYIDGELSHDIRKEFTKHLDTCEACQDLL 39
Cdd:TIGR02949   9 CAEvIDHLYEFLDGECTEDDAERLRRHLAACPECLREY 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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