NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446578739|ref|WP_000656085|]
View 

MULTISPECIES: Imm3 family immunity protein [Bacillus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Imm3 super family cl16871
Immunity protein Imm3; A predicted Immunity protein, with a mostly all-alpha fold, present in ...
 4-117 1.34e-47

Immunity protein Imm3; A predicted Immunity protein, with a mostly all-alpha fold, present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene.


The actual alignment was detected with superfamily member pfam14425:

Pssm-ID: 373060  Cd Length: 119  Bit Score: 148.37  E-value: 1.34e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446578739    4 WEYNELFHAIREAYEELLDEERGYRYAIAKLADEFDN---LGKIEGVIVDTAIGEIAVDYHIVFVGRIEGITKRLSMFNP 80
Cdd:pfam14425   3 WEYQELFDAINEAYDEYKDEDRSYSEAIARTSDEFENvsyLGEMEKAVVNVAIGEIALSHDKIFVGLKEGIIERLSSINP 82

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 446578739   81 QEAEGELTVEEIKDLSIRINNVIEGLKNVKSDYKSSV 117
Cdd:pfam14425  83 EEAQGELTLEEIKDLSRRRNKVLEGLENVPVDYNPSA 119
 
Name Accession Description Interval E-value
Imm3 pfam14425
Immunity protein Imm3; A predicted Immunity protein, with a mostly all-alpha fold, present in ...
 4-117 1.34e-47

Immunity protein Imm3; A predicted Immunity protein, with a mostly all-alpha fold, present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene.


Pssm-ID: 373060  Cd Length: 119  Bit Score: 148.37  E-value: 1.34e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446578739    4 WEYNELFHAIREAYEELLDEERGYRYAIAKLADEFDN---LGKIEGVIVDTAIGEIAVDYHIVFVGRIEGITKRLSMFNP 80
Cdd:pfam14425   3 WEYQELFDAINEAYDEYKDEDRSYSEAIARTSDEFENvsyLGEMEKAVVNVAIGEIALSHDKIFVGLKEGIIERLSSINP 82

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 446578739   81 QEAEGELTVEEIKDLSIRINNVIEGLKNVKSDYKSSV 117
Cdd:pfam14425  83 EEAQGELTLEEIKDLSRRRNKVLEGLENVPVDYNPSA 119
 
Name Accession Description Interval E-value
Imm3 pfam14425
Immunity protein Imm3; A predicted Immunity protein, with a mostly all-alpha fold, present in ...
 4-117 1.34e-47

Immunity protein Imm3; A predicted Immunity protein, with a mostly all-alpha fold, present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene.


Pssm-ID: 373060  Cd Length: 119  Bit Score: 148.37  E-value: 1.34e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446578739    4 WEYNELFHAIREAYEELLDEERGYRYAIAKLADEFDN---LGKIEGVIVDTAIGEIAVDYHIVFVGRIEGITKRLSMFNP 80
Cdd:pfam14425   3 WEYQELFDAINEAYDEYKDEDRSYSEAIARTSDEFENvsyLGEMEKAVVNVAIGEIALSHDKIFVGLKEGIIERLSSINP 82

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 446578739   81 QEAEGELTVEEIKDLSIRINNVIEGLKNVKSDYKSSV 117
Cdd:pfam14425  83 EEAQGELTLEEIKDLSRRRNKVLEGLENVPVDYNPSA 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH