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Conserved domains on  [gi|446596077|ref|WP_000673423|]
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MULTISPECIES: fimbrial protein [Salmonella]

Protein Classification

fimbrial protein( domain architecture ID 10015029)

fimbrial protein similar to Escherichia coli fimbrial-like protein YadL, which is part of the yadCKLM-htrE-yadVN fimbrial operon and could contribute to adhesion to various surfaces in specific environmental niches

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15263 PRK15263
fimbrial-like protein;
6-185 1.56e-58

fimbrial-like protein;


:

Pssm-ID: 185171  Cd Length: 196  Bit Score: 181.49  E-value: 1.56e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446596077   6 ALITLSVSAVLFSGVVR-AAITGTDSVQMTFKTTVTTGTCKAIVVNGDGKNVSTIGYGETYKSDLN--KKAMPLSIVFSN 82
Cdd:PRK15263   1 LLYGLSASVVLAAGLFSvAAYAGTDSLGLTVNTTVEMGTCTAQLVDDSDTPISTIAFGDVYISELNakTKVKTFKIRFSD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446596077  83 CSGVTIAEVEAKAGTGGTCSGDNLDGDSYAAGL-------NTAFEIWGGD---ADTGVKLSCKTPPaAQEVTITNGAGT- 151
Cdd:PRK15263  81 CAGLPNKKAQIKLTPRATCEGSSNDGAGFANGStaadkatAVAVEVWTTDtpaTDGATQFSCVTPA-TQEVTISNATGTq 159

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 446596077 152 ---YPMTSRIVVANGKSLSDVTAGDVTAPVTFVVTYP 185
Cdd:PRK15263 160 vvdYPMSARLVVAKGKTVSDVTAGDFTAPATFTVTYQ 196
 
Name Accession Description Interval E-value
PRK15263 PRK15263
fimbrial-like protein;
6-185 1.56e-58

fimbrial-like protein;


Pssm-ID: 185171  Cd Length: 196  Bit Score: 181.49  E-value: 1.56e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446596077   6 ALITLSVSAVLFSGVVR-AAITGTDSVQMTFKTTVTTGTCKAIVVNGDGKNVSTIGYGETYKSDLN--KKAMPLSIVFSN 82
Cdd:PRK15263   1 LLYGLSASVVLAAGLFSvAAYAGTDSLGLTVNTTVEMGTCTAQLVDDSDTPISTIAFGDVYISELNakTKVKTFKIRFSD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446596077  83 CSGVTIAEVEAKAGTGGTCSGDNLDGDSYAAGL-------NTAFEIWGGD---ADTGVKLSCKTPPaAQEVTITNGAGT- 151
Cdd:PRK15263  81 CAGLPNKKAQIKLTPRATCEGSSNDGAGFANGStaadkatAVAVEVWTTDtpaTDGATQFSCVTPA-TQEVTISNATGTq 159

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 446596077 152 ---YPMTSRIVVANGKSLSDVTAGDVTAPVTFVVTYP 185
Cdd:PRK15263 160 vvdYPMSARLVVAKGKTVSDVTAGDFTAPATFTVTYQ 196
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
48-185 1.27e-04

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 40.79  E-value: 1.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446596077  48 VVNGDGKNVsTIGYGETYKSDLNK-----KAMPLSIVFSNCSGVTIAEVEAK-AGTGGTCSGDNL--DGDSYAAGLntAF 119
Cdd:COG3539   38 TINTGSKDQ-TVDLGTVSTSDLNGvgstsGPKPFSIKLTNCDAGTSNSVKVTfTGTADSANPGLLanTGSGGASGV--GI 114

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446596077 120 EIWGGDaDTGVKLSckTPPAAQEVTiTNGAGTYPMTSRIVvangKSLSDVTAGDVTAPVTFVVTYP 185
Cdd:COG3539  115 QLLDSD-GTPIPLG--TPSSAVTLT-SNGSATLPFYARYV----ATGATVTAGSFNATATFTIDYQ 172
 
Name Accession Description Interval E-value
PRK15263 PRK15263
fimbrial-like protein;
6-185 1.56e-58

fimbrial-like protein;


Pssm-ID: 185171  Cd Length: 196  Bit Score: 181.49  E-value: 1.56e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446596077   6 ALITLSVSAVLFSGVVR-AAITGTDSVQMTFKTTVTTGTCKAIVVNGDGKNVSTIGYGETYKSDLN--KKAMPLSIVFSN 82
Cdd:PRK15263   1 LLYGLSASVVLAAGLFSvAAYAGTDSLGLTVNTTVEMGTCTAQLVDDSDTPISTIAFGDVYISELNakTKVKTFKIRFSD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446596077  83 CSGVTIAEVEAKAGTGGTCSGDNLDGDSYAAGL-------NTAFEIWGGD---ADTGVKLSCKTPPaAQEVTITNGAGT- 151
Cdd:PRK15263  81 CAGLPNKKAQIKLTPRATCEGSSNDGAGFANGStaadkatAVAVEVWTTDtpaTDGATQFSCVTPA-TQEVTISNATGTq 159

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 446596077 152 ---YPMTSRIVVANGKSLSDVTAGDVTAPVTFVVTYP 185
Cdd:PRK15263 160 vvdYPMSARLVVAKGKTVSDVTAGDFTAPATFTVTYQ 196
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
48-185 1.27e-04

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 40.79  E-value: 1.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446596077  48 VVNGDGKNVsTIGYGETYKSDLNK-----KAMPLSIVFSNCSGVTIAEVEAK-AGTGGTCSGDNL--DGDSYAAGLntAF 119
Cdd:COG3539   38 TINTGSKDQ-TVDLGTVSTSDLNGvgstsGPKPFSIKLTNCDAGTSNSVKVTfTGTADSANPGLLanTGSGGASGV--GI 114

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446596077 120 EIWGGDaDTGVKLSckTPPAAQEVTiTNGAGTYPMTSRIVvangKSLSDVTAGDVTAPVTFVVTYP 185
Cdd:COG3539  115 QLLDSD-GTPIPLG--TPSSAVTLT-SNGSATLPFYARYV----ATGATVTAGSFNATATFTIDYQ 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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