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Conserved domains on  [gi|446605151|ref|WP_000682497|]
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MULTISPECIES: DUF1158 family protein [Salmonella]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1158 super family cl07867
Protein of unknown function (DUF1158); This family consists of several enterobacterial YbdJ ...
 2-79 3.81e-23

Protein of unknown function (DUF1158); This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown


The actual alignment was detected with superfamily member pfam06643:

Pssm-ID: 399557  Cd Length: 78  Bit Score: 83.80  E-value: 3.81e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446605151   2 KHPLESLMTAAGILLMALLSSLLLPAPSLGLALAQKLVGIFHLMDLNQLYTLLFCLWFLLLGALEYYVIRFIWRRWFS 79
Cdd:pfam06643  1 KHPLETLVSAAGILLLALLSCLLLPAPSLGLQLAQKLVATFHLMDLNQLYTLLFCLWFLLLGAVEYVVIRFIWRRWFS 78
 
Name Accession Description Interval E-value
DUF1158 pfam06643
Protein of unknown function (DUF1158); This family consists of several enterobacterial YbdJ ...
 2-79 3.81e-23

Protein of unknown function (DUF1158); This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown


Pssm-ID: 399557  Cd Length: 78  Bit Score: 83.80  E-value: 3.81e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446605151   2 KHPLESLMTAAGILLMALLSSLLLPAPSLGLALAQKLVGIFHLMDLNQLYTLLFCLWFLLLGALEYYVIRFIWRRWFS 79
Cdd:pfam06643  1 KHPLETLVSAAGILLLALLSCLLLPAPSLGLQLAQKLVATFHLMDLNQLYTLLFCLWFLLLGAVEYVVIRFIWRRWFS 78
 
Name Accession Description Interval E-value
DUF1158 pfam06643
Protein of unknown function (DUF1158); This family consists of several enterobacterial YbdJ ...
 2-79 3.81e-23

Protein of unknown function (DUF1158); This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown


Pssm-ID: 399557  Cd Length: 78  Bit Score: 83.80  E-value: 3.81e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446605151   2 KHPLESLMTAAGILLMALLSSLLLPAPSLGLALAQKLVGIFHLMDLNQLYTLLFCLWFLLLGALEYYVIRFIWRRWFS 79
Cdd:pfam06643  1 KHPLETLVSAAGILLLALLSCLLLPAPSLGLQLAQKLVATFHLMDLNQLYTLLFCLWFLLLGAVEYVVIRFIWRRWFS 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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