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Conserved domains on  [gi|446605776|ref|WP_000683122|]
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MULTISPECIES: phage minor tail U family protein [Escherichia]

Protein Classification

phage minor tail U family protein( domain architecture ID 10533004)

phage minor tail U family protein such as Escherichia virus tail tube terminator protein TrP or minor tail protein U (gpU) that plays an essential role in tail assembly by capping the rapidly polymerizing tail once it has reached its requisite length

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_tail_U pfam06141
Phage minor tail protein U; Tail fibre component U of bacteriophage.
 2-129 5.82e-70

Phage minor tail protein U; Tail fibre component U of bacteriophage.


:

Pssm-ID: 399267  Cd Length: 129  Bit Score: 205.80  E-value: 5.82e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446605776    2 KHTELRAAVLDALEKH-DTGATLFDGRPAVFDEADFPAIAVYLIGAEYTGEELDSDTWQAELHIEVFLPAQVPDSELDSW 80
Cdd:pfam06141   1 KHTQIRSAVLEALESQiGTSATYFDGRPAFIEEEELPAVAVYLTDAQYTGEELDEDTWQAVLHIAVFLKAQAPDSELDEW 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 446605776   81 MESRIYPVMSDVPALSDLITSMVASGYDYRRDDDAGLWSSADLTYVITY 129
Cdd:pfam06141  81 MEERIYPVLEEVPGLEDLIDTMVASGYDYQRDDEMATWGSADLTYRITY 129
 
Name Accession Description Interval E-value
Phage_tail_U pfam06141
Phage minor tail protein U; Tail fibre component U of bacteriophage.
 2-129 5.82e-70

Phage minor tail protein U; Tail fibre component U of bacteriophage.


Pssm-ID: 399267  Cd Length: 129  Bit Score: 205.80  E-value: 5.82e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446605776    2 KHTELRAAVLDALEKH-DTGATLFDGRPAVFDEADFPAIAVYLIGAEYTGEELDSDTWQAELHIEVFLPAQVPDSELDSW 80
Cdd:pfam06141   1 KHTQIRSAVLEALESQiGTSATYFDGRPAFIEEEELPAVAVYLTDAQYTGEELDEDTWQAVLHIAVFLKAQAPDSELDEW 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 446605776   81 MESRIYPVMSDVPALSDLITSMVASGYDYRRDDDAGLWSSADLTYVITY 129
Cdd:pfam06141  81 MEERIYPVLEEVPGLEDLIDTMVASGYDYQRDDEMATWGSADLTYRITY 129
 
Name Accession Description Interval E-value
Phage_tail_U pfam06141
Phage minor tail protein U; Tail fibre component U of bacteriophage.
 2-129 5.82e-70

Phage minor tail protein U; Tail fibre component U of bacteriophage.


Pssm-ID: 399267  Cd Length: 129  Bit Score: 205.80  E-value: 5.82e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446605776    2 KHTELRAAVLDALEKH-DTGATLFDGRPAVFDEADFPAIAVYLIGAEYTGEELDSDTWQAELHIEVFLPAQVPDSELDSW 80
Cdd:pfam06141   1 KHTQIRSAVLEALESQiGTSATYFDGRPAFIEEEELPAVAVYLTDAQYTGEELDEDTWQAVLHIAVFLKAQAPDSELDEW 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 446605776   81 MESRIYPVMSDVPALSDLITSMVASGYDYRRDDDAGLWSSADLTYVITY 129
Cdd:pfam06141  81 MEERIYPVLEEVPGLEDLIDTMVASGYDYQRDDEMATWGSADLTYRITY 129
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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