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Conserved domains on  [gi|446607510|ref|WP_000684856|]
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MULTISPECIES: Fe(3+) dicitrate ABC transporter permease subunit FecD [Enterobacteriaceae]

Protein Classification

fecD family protein( domain architecture ID 10793309)

fecD family protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
1-318 1.24e-159

Fe(3+) dicitrate ABC transporter permease subunit FecD;


:

Pssm-ID: 182071  Cd Length: 318  Bit Score: 447.96  E-value: 1.24e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   1 MKIALVIFITLALAGCALLSLHMGVIPVPWRALLTDWQAGREHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPL 80
Cdd:PRK09777   1 MKIALVIFITLALAGCALLSLRMGVIPLPWRALLTDWQAGDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  81 ASPDILGVNHAASLASVGALLLMPSLPVMVLPLLAFAGGMAGLILLKMLAKTHQPMKLALTGVALSACWASLTDYLMLSR 160
Cdd:PRK09777  81 ASPDILGVNHAASLASVGALLLFPSLPVMWLPLLAFIGGMAGLILLKMLAGTHQPMKLALTGVALSALWASLTDYLMLSR 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 161 PQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGV 240
Cdd:PRK09777 161 PQDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGV 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446607510 241 AACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR 318
Cdd:PRK09777 241 AACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVRMR 318
 
Name Accession Description Interval E-value
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
1-318 1.24e-159

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 447.96  E-value: 1.24e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   1 MKIALVIFITLALAGCALLSLHMGVIPVPWRALLTDWQAGREHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPL 80
Cdd:PRK09777   1 MKIALVIFITLALAGCALLSLRMGVIPLPWRALLTDWQAGDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  81 ASPDILGVNHAASLASVGALLLMPSLPVMVLPLLAFAGGMAGLILLKMLAKTHQPMKLALTGVALSACWASLTDYLMLSR 160
Cdd:PRK09777  81 ASPDILGVNHAASLASVGALLLFPSLPVMWLPLLAFIGGMAGLILLKMLAGTHQPMKLALTGVALSALWASLTDYLMLSR 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 161 PQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGV 240
Cdd:PRK09777 161 PQDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGV 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446607510 241 AACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR 318
Cdd:PRK09777 241 AACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVRMR 318
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
20-318 4.22e-92

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 276.18  E-value: 4.22e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  20 SLHMGVIPVPWRAL---LTDWQAGREHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLAS 96
Cdd:COG0609    1 SLSLGAVPISLSDVlraLLGPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  97 VGALLLMPSLPVMVLPLLAFAGGMAGLILLKMLAKTH---QPMKLALTGVALSACWASLTDYLML-SRPQDVNNALLWLT 172
Cdd:COG0609   81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGgglSPLRLVLAGVAVSALFSALTSLLLLlADPEQLRSIVFWLM 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 173 GSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGVAACGPISFIGLV 252
Cdd:COG0609  161 GSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446607510 253 VPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR 318
Cdd:COG0609  241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
12-316 7.19e-77

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 237.43  E-value: 7.19e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   12 ALAGCALLSLHMGVIPVPWRALLTDWQ--AGREHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVN 89
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLggDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   90 HAASLASVGALLLMPSLPVMVLPLLAFAGGMAGLILLKMLAKTHQ---PMKLALTGVALSACWASLTDYLM-LSRPQDVN 165
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGgasPLRLILAGIAVSALLSALTSLLLlLLNPEALQ 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  166 NALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGVAACGP 245
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446607510  246 ISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVR 316
Cdd:pfam01032 241 IGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
55-314 2.51e-58

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 188.15  E-value: 2.51e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  55 LLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLLMPSLPVMVLPLLAFAGGMAGLILLKMLA--KT 132
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLAsrGG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 133 HQPMKLALTGVALSACWASLTDYLMLSRPQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDA 212
Cdd:cd06550   81 LSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDED 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 213 RATTLGVSVPHTRFWALLLAVAMTSTGVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHp 292
Cdd:cd06550  161 LAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL- 239
                        250       260
                 ....*....|....*....|..
gi 446607510 293 PLELPVGVLTAIIGAPWFVWLL 314
Cdd:cd06550  240 PSELPVGPVTALLGAPYFLYLL 261
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
41-318 1.53e-50

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 170.04  E-value: 1.53e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   41 REHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLLMPSLpvmVLPLLAFAGGM 120
Cdd:TIGR03869  43 RLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVLGVAV---LLPVAAFAGAL 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  121 AGLILLKMLAKTH---QPMKLALTGVALSACWASLTDYLMLSRPQ--DVNNALLWLTGSLWGRDWSFVKIA-IPLMILFL 194
Cdd:TIGR03869 120 LALAATLGLARTLgtlTPTRTILAGLAVSQLCAAVTSFVIFWSATgdSYREILSWLMGSLAGATWGSVAIAgGALLVVGL 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  195 PLSLSfCRDLDLLALGDARATTLGVSVPHTRfWALLLAVAM-TSTGVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSA 273
Cdd:TIGR03869 200 VLLAS-GRVLDAFAFGDSSAAALGVDVERTR-WLLLTLVALlTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSA 277
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 446607510  274 LTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR 318
Cdd:TIGR03869 278 LAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRSR 322
 
Name Accession Description Interval E-value
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
1-318 1.24e-159

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 447.96  E-value: 1.24e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   1 MKIALVIFITLALAGCALLSLHMGVIPVPWRALLTDWQAGREHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPL 80
Cdd:PRK09777   1 MKIALVIFITLALAGCALLSLRMGVIPLPWRALLTDWQAGDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPL 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  81 ASPDILGVNHAASLASVGALLLMPSLPVMVLPLLAFAGGMAGLILLKMLAKTHQPMKLALTGVALSACWASLTDYLMLSR 160
Cdd:PRK09777  81 ASPDILGVNHAASLASVGALLLFPSLPVMWLPLLAFIGGMAGLILLKMLAGTHQPMKLALTGVALSALWASLTDYLMLSR 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 161 PQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGV 240
Cdd:PRK09777 161 PQDINNALLWLTGSLWGRDWSFVKVALPWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGV 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446607510 241 AACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR 318
Cdd:PRK09777 241 AACGPISFIGLVVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLLVRMR 318
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
20-318 4.22e-92

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 276.18  E-value: 4.22e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  20 SLHMGVIPVPWRAL---LTDWQAGREHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLAS 96
Cdd:COG0609    1 SLSLGAVPISLSDVlraLLGPDGDPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  97 VGALLLMPSLPVMVLPLLAFAGGMAGLILLKMLAKTH---QPMKLALTGVALSACWASLTDYLML-SRPQDVNNALLWLT 172
Cdd:COG0609   81 VLAIVLGGGLSALGLPLAAFLGALLAALLVYLLARRGgglSPLRLVLAGVAVSALFSALTSLLLLlADPEQLRSIVFWLM 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 173 GSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGVAACGPISFIGLV 252
Cdd:COG0609  161 GSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGFVGLV 240
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446607510 253 VPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR 318
Cdd:COG0609  241 VPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
12-316 7.19e-77

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 237.43  E-value: 7.19e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   12 ALAGCALLSLHMGVIPVPWRALLTDWQ--AGREHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVN 89
Cdd:pfam01032   1 LLLLLILLSLFIGAVKISPSDVFSALLggDDSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGIS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   90 HAASLASVGALLLMPSLPVMVLPLLAFAGGMAGLILLKMLAKTHQ---PMKLALTGVALSACWASLTDYLM-LSRPQDVN 165
Cdd:pfam01032  81 SGAALGAVLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRGgasPLRLILAGIAVSALLSALTSLLLlLLNPEALQ 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  166 NALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGVAACGP 245
Cdd:pfam01032 161 SILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAVVGP 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446607510  246 ISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVR 316
Cdd:pfam01032 241 IGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLLLR 311
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
11-318 5.50e-68

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 215.76  E-value: 5.50e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  11 LALAGCALLSLHMGVIPVP----WRALLTdwQAGREHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDIL 86
Cdd:COG4779   31 LLLLALAVLALTLGDYPLSpgdvLRALLG--EGDPGASFVVLELRLPRALAALLVGAALGLSGAIFQSLTRNPLASPDII 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  87 GVNHAASLASVGALLLMPSLPVMVlPLLAFAGGMAGLILLKMLAKTH--QPMKLALTGVALSACWASLTDYLMLS-RPQD 163
Cdd:COG4779  109 GITAGASAGAVAAIVVLGGSGLAV-ALGALAGGLATALLVYLLAWRGgvSGYRLILVGIGVSAMLTAVNSYLLTRaDLED 187
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 164 VNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGVAAC 243
Cdd:COG4779  188 AQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAALGVRVERTRLLLLLVAVALAAVATAAA 267
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446607510 244 GPISFIGLVVPHMMRSITGGRHRRLLPvSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR 318
Cdd:COG4779  268 GPIAFVALAAPQIARRLTRSPGPPLLP-SALVGALLLLAADLVAQHLLAPVQLPVGVVTGALGGPYLLWLLIREN 341
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
4-318 3.96e-67

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 222.02  E-value: 3.96e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   4 ALVIFITLALAGCALLSLHMGVIPVPWRALLTDWQAgrehyyVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASP 83
Cdd:PRK10577 356 AWLLALGLLLLLALVVALSFGRDAHGWNWLSGQLLD------ALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASP 429
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  84 DILGVNHAASLASVGALLLMPSLPVMVLPLLAFAGGMAGLILLKMLAKTH--QPMKLALTGVALSACWASLTDYLMLSRP 161
Cdd:PRK10577 430 EVLGISSGAGLGVVLALFLVPGAGFGWLLAAALLGALAALALILLLARRGgfAPERLLLTGIALSALFTALIQLLLASGD 509
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 162 QDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGVA 241
Cdd:PRK10577 510 PRAAQLLTWLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRARLALLLLAALLTAAATA 589
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446607510 242 ACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR 318
Cdd:PRK10577 590 TVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAALIGAPYFLWLLRRSR 666
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
55-314 2.51e-58

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 188.15  E-value: 2.51e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  55 LLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLLMPSLPVMVLPLLAFAGGMAGLILLKMLA--KT 132
Cdd:cd06550    1 LLAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLAsrGG 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 133 HQPMKLALTGVALSACWASLTDYLMLSRPQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDA 212
Cdd:cd06550   81 LSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDED 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 213 RATTLGVSVPHTRFWALLLAVAMTSTGVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHp 292
Cdd:cd06550  161 LAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLL- 239
                        250       260
                 ....*....|....*....|..
gi 446607510 293 PLELPVGVLTAIIGAPWFVWLL 314
Cdd:cd06550  240 PSELPVGPVTALLGAPYFLYLL 261
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
1-318 4.40e-55

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 189.66  E-value: 4.40e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   1 MKIALVIFITLALAGCALLSLHMGVIPVPWRALLTDWQAGREHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPL 80
Cdd:PRK10577  12 LPALLLALLLLLALALTLTQLSAALPLSQWLQALWGPDADDLEQLLLHYSRLPRLAIALLVGAALGLAGALLQQVLRNPL 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  81 ASPDILGVNHAASLASVGALLLMPSLPVMVLPLLAFAGGM--AGLILLKMLAKTHQPMKLALTGVALSACWASLTDYLML 158
Cdd:PRK10577  92 ASPTTLGVAAGAQLALVLATLFAPALLALASQLAAFAGGLlaAALVFALAGGKRLSPLRLVLAGMVVSLYLGALTTLLLL 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 159 SRPQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTST 238
Cdd:PRK10577 172 FNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLTRLAALALAVLLSAA 251
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 239 GVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPL--ELPVGVLTAIIGAPWFVWLLVR 316
Cdd:PRK10577 252 VVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLAGVGgeLLPTGAVTALIGAPLLLWLLPR 331

                 ..
gi 446607510 317 MR 318
Cdd:PRK10577 332 LR 333
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
10-318 1.63e-51

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 172.73  E-value: 1.63e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  10 TLALAGCALLSLHMGVIPVPWRALLTDwqagrEHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVN 89
Cdd:COG4139   19 LLLLLLLFVLSLCAGEVWIPPTQWLSE-----AWQLFVWQLRLPRTLAAVLVGASLAVSGAVMQALFENPLAEPGLLGIS 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  90 HAASLASVGALLLMPS-LPVMVLPLLAFAGGMAGLILLKMLAKTH-QPMKLALTGVAL-SACWASLTDYLMLSRPQDVNN 166
Cdd:COG4139   94 NGAGVGLVLVVLLGGGlLPPWLLSLAAIAGALLVTLLLLAFARRRlSNARLLLIGVALgIICSAIMTWAVYFSSSLDLRQ 173
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 167 ALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSfCRDLDLLALGDARATTLGVSVPHTRfWALLLAVAM-TSTGVAACGP 245
Cdd:COG4139  174 LMYWMMGSFGGVDWRQLWLLLALLPVLLWLCLQ-GKPLNLLLLGENQARQLGLSVHRWR-NLLVLATGLlVGVSVALAGP 251
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446607510 246 ISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR 318
Cdd:COG4139  252 IGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVTATLGAPVFIWLLLRRR 324
btuC PRK09535
cobalamin ABC transporter permease BtuC;
43-316 1.51e-50

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 171.47  E-value: 1.51e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  43 HYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLLMPSLPvMVLPLLAFAGGMAG 122
Cdd:PRK09535  87 AQTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAAVGAVAAIVLPLAVP-FGLQAAAFAGALVA 165
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 123 LILLKMLAKTHQPMKLA---LTGVALSACWASLTDYLMLSRPQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLS 199
Cdd:PRK09535 166 AFGVYAIATENGRTPVAtllLAGVAVQTFLGAVISYLLLHSGESLRRAVYWLMGHLHGSTWSDVEVALPVVVVGFVVLLA 245
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 200 FCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALL 279
Cdd:PRK09535 246 YARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSALAGASF 325
                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 446607510 280 LVVADLLARiiHPPLELPVGVLTAIIGAPWFVWLLVR 316
Cdd:PRK09535 326 LVATDTVAR--SGPAEVPVGIVTAALGAPFFLYLLRT 360
F420-0_ABCperm TIGR03869
proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter ...
41-318 1.53e-50

proposed F420-0 ABC transporter, permease protein; his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.


Pssm-ID: 163581  Cd Length: 325  Bit Score: 170.04  E-value: 1.53e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   41 REHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLLMPSLpvmVLPLLAFAGGM 120
Cdd:TIGR03869  43 RLQDAIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPLADPYLLGLSSGASLGAVAVLVLGVAV---LLPVAAFAGAL 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  121 AGLILLKMLAKTH---QPMKLALTGVALSACWASLTDYLMLSRPQ--DVNNALLWLTGSLWGRDWSFVKIA-IPLMILFL 194
Cdd:TIGR03869 120 LALAATLGLARTLgtlTPTRTILAGLAVSQLCAAVTSFVIFWSATgdSYREILSWLMGSLAGATWGSVAIAgGALLVVGL 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  195 PLSLSfCRDLDLLALGDARATTLGVSVPHTRfWALLLAVAM-TSTGVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSA 273
Cdd:TIGR03869 200 VLLAS-GRVLDAFAFGDSSAAALGVDVERTR-WLLLTLVALlTGALVSVSGAIGFVGLILPHAVRLLTGPRHRLLLPVSA 277
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 446607510  274 LTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR 318
Cdd:TIGR03869 278 LAGAVFLVWADTLARTVFAPRELPVGIITALIGAPVFAVLLYRSR 322
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
35-318 1.01e-48

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 165.51  E-value: 1.01e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  35 TDWQAGREHYYVLmEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLLMPS-LPVMVLPL 113
Cdd:PRK03784  43 GDWLSPRGELFVW-QLRLPRTLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGlLPPWALSL 121
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 114 LAFAGGMAGLILLKMLAKTHQ--PMKLALTGVALS-ACWASLTDYLMLSRPQDVNNALLWLTGSLWGRDWSFVKiaipLM 190
Cdd:PRK03784 122 CAIAGALLITLILLRFARRHRlsTSRLLLAGVALGiICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQSW----LM 197
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 191 ILFLPLSLSFC---RDLDLLALGDARATTLGVSVPHTRfWALLLAVA-MTSTGVAACGPISFIGLVVPHMMRSITGGRHR 266
Cdd:PRK03784 198 LALLPVLIWLCcqgRPLNMLALGEISARQLGLPLWFWR-NLLVLATGwLVGVSVALAGAIGFIGLVIPHILRLCGLTDHR 276
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446607510 267 RLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRMR 318
Cdd:PRK03784 277 VLLPGCALAGASLLLLADIVARLALASAELPIGVVTATLGAPVFIWLLLRSH 328
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
8-318 2.61e-43

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 151.39  E-value: 2.61e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   8 FITLALAGCALLSLHM-GVIPVP----WRALLTDWQAGREHYYVLmEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLAS 82
Cdd:PRK11228   4 LPVAALIGLFWLSLFCySAIPISaadaLNALLPGHTPTLPEALVQ-NLRLPRSLVAVLIGASLALAGALLQTLTHNPLAS 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  83 PDILGVNHAASLASVGALLLMPS-LPVMVLPLLAFAGGMAGLILLKMLAKTHQPM----KLALTGVALSACWASLTDYLM 157
Cdd:PRK11228  83 PSLLGINSGAALAMALTSALSPTpFAGYSLAFIAACGGGLSWLLVMTAGGGWRHThdrnRLILAGIALSALCMALTRITL 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 158 LSRPQDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTS 237
Cdd:PRK11228 163 LLAEDHAYGIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVG 242
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 238 TGVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLVRM 317
Cdd:PRK11228 243 ACVSVAGPVAFIGLLVPHLARFWIGYDQRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCFVWLARRR 322

                 .
gi 446607510 318 R 318
Cdd:PRK11228 323 G 323
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
11-318 8.09e-38

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 137.15  E-value: 8.09e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  11 LALAGCALLSLHMGVIPVP----WRALLTDWQAGreHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDIL 86
Cdd:PRK10441  18 LLLIIATALSLLIGAKSLPasvvLEALSGTCQSA--DCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLL 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  87 GVNHAASLASV-GALLLMPSLPVMVLpLLAFAGGMAGLILLKML----AKTHQPMKLALTGVALSACWASLTDYLMLSRP 161
Cdd:PRK10441  96 GVNAGASFAIVlGAALFGYSSAQEQL-AMAFAGALVASLIVAFTgsqgGGQLSPVRLTLAGVALAAVLEGLTSGIALLNP 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 162 QDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAMTSTGVA 241
Cdd:PRK10441 175 DVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATA 254
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446607510 242 ACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVADLLARIIHPPlELPVGVLTAIIGAPWFVWLLVRMR 318
Cdd:PRK10441 255 VVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPG-ELRVSVVSAFIGAPVLIFLVRRKT 330
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
3-316 1.11e-37

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 136.76  E-value: 1.11e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510   3 IALVIFITLALAGCALLSLHMGVIPVP----WRALLTDwqAGREHYYVLMEYRLPRLLLALFVGAALAVAGVLIQGIVRN 78
Cdd:PRK10440   9 LITCLLLLAACVAAGLWGLRSGAVTLEtsqvFAALMGD--APRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRN 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510  79 PLASPDILGVNHAASLASVGALLLMPSlPVMVLPLLAFAGGMAGLILLKMLA--KTHQPMKLALTGVALSACWASLTDYL 156
Cdd:PRK10440  87 PLGSPDVMGFNTGAWSGVLVAMVLFGQ-DLTAIALAAMAGGIVTSLLVWLLAwrNGIDTFRLIIIGIGVRAMLVAFNTWL 165
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 157 MLSRP-QDVNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWALLLAVAM 235
Cdd:PRK10440 166 LLKASlETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLLMLVAVVL 245
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446607510 236 TSTGVAACGPISFIGLVVPHMMRSITGGRhRRLLPVSALTGALLLVVADLLARIIHPPLELPVGVLTAIIGAPWFVWLLV 315
Cdd:PRK10440 246 TAAATALAGPISFIALVAPHIARRLSGTA-RWGLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLI 324

                 .
gi 446607510 316 R 316
Cdd:PRK10440 325 Q 325
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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