NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446614288|ref|WP_000691634|]
View 

YbjP/YqhG family protein [Escherichia coli]

Protein Classification

YbjP/YqhG family protein( domain architecture ID 10583805)

YbjP/YqhG family protein is a DUF3828 domain-containing protein; similar to Escherichia coli protein YqhG which regulates transcription of the adjacent Escherichia coli genes yqhD and dkgA that are involved in furfural tolerance

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3828 pfam12883
Protein of unknown function (DUF3828); This is a family of bacterial proteins of unknown ...
 25-143 2.94e-39

Protein of unknown function (DUF3828); This is a family of bacterial proteins of unknown function.


:

Pssm-ID: 403935  Cd Length: 122  Bit Score: 134.07  E-value: 2.94e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446614288   25 VEQTVRQIYQNYKSDAS-TPYFGETGERAITSARIQQALTLNDNLTLPgNIGWLDYDPVCDCQDFGDLVLESVAITQPDA 103
Cdd:pfam12883   2 PEQTVQQFYTQYMLTFTeTPKQDAAAMRPYISKELLQQLGSAFIDQLP-EQEILDYDPFSYAQDYDPDWIPSVKVGPAKA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 446614288  104 DHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSN 143
Cdd:pfam12883  81 DLGGAVVDVWLGKQDGEPIQLTVYLKRENGKWKIDDVRDL 120
 
Name Accession Description Interval E-value
DUF3828 pfam12883
Protein of unknown function (DUF3828); This is a family of bacterial proteins of unknown ...
 25-143 2.94e-39

Protein of unknown function (DUF3828); This is a family of bacterial proteins of unknown function.


Pssm-ID: 403935  Cd Length: 122  Bit Score: 134.07  E-value: 2.94e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446614288   25 VEQTVRQIYQNYKSDAS-TPYFGETGERAITSARIQQALTLNDNLTLPgNIGWLDYDPVCDCQDFGDLVLESVAITQPDA 103
Cdd:pfam12883   2 PEQTVQQFYTQYMLTFTeTPKQDAAAMRPYISKELLQQLGSAFIDQLP-EQEILDYDPFSYAQDYDPDWIPSVKVGPAKA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 446614288  104 DHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSN 143
Cdd:pfam12883  81 DLGGAVVDVWLGKQDGEPIQLTVYLKRENGKWKIDDVRDL 120
 
Name Accession Description Interval E-value
DUF3828 pfam12883
Protein of unknown function (DUF3828); This is a family of bacterial proteins of unknown ...
 25-143 2.94e-39

Protein of unknown function (DUF3828); This is a family of bacterial proteins of unknown function.


Pssm-ID: 403935  Cd Length: 122  Bit Score: 134.07  E-value: 2.94e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446614288   25 VEQTVRQIYQNYKSDAS-TPYFGETGERAITSARIQQALTLNDNLTLPgNIGWLDYDPVCDCQDFGDLVLESVAITQPDA 103
Cdd:pfam12883   2 PEQTVQQFYTQYMLTFTeTPKQDAAAMRPYISKELLQQLGSAFIDQLP-EQEILDYDPFSYAQDYDPDWIPSVKVGPAKA 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 446614288  104 DHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSN 143
Cdd:pfam12883  81 DLGGAVVDVWLGKQDGEPIQLTVYLKRENGKWKIDDVRDL 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH