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Conserved domains on  [gi|446623778|ref|WP_000701124|]
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MULTISPECIES: DUF4145 domain-containing protein [Escherichia]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4145 super family cl16330
Domain of unknown function (DUF4145); This domain is found in a variety of restriction ...
 85-162 7.60e-12

Domain of unknown function (DUF4145); This domain is found in a variety of restriction endonuclease enzymes. The exact function of this domain is uncertain.


The actual alignment was detected with superfamily member pfam13643:

Pssm-ID: 433374 [Multi-domain]  Cd Length: 88  Bit Score: 58.87  E-value: 7.60e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446623778   85 EARNIFNLSPKGSAAILRLCLQKLMVHLGL-EGDKINDDIATLVQKG-LPEEIQQALDICRVVGNNAVHPG-EINIDDSP 161
Cdd:pfam13643   2 EAEKALDADPRAAATMIRRALEALLKDKGIaKGKSLYAKIEDLVAKGvIPPALKELLHAIRVIGNDGAHPGkPLTKDDAE 81


                  .
gi 446623778  162 E 162
Cdd:pfam13643  82 D 82
 
Name Accession Description Interval E-value
DUF4145 pfam13643
Domain of unknown function (DUF4145); This domain is found in a variety of restriction ...
 85-162 7.60e-12

Domain of unknown function (DUF4145); This domain is found in a variety of restriction endonuclease enzymes. The exact function of this domain is uncertain.


Pssm-ID: 433374 [Multi-domain]  Cd Length: 88  Bit Score: 58.87  E-value: 7.60e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446623778   85 EARNIFNLSPKGSAAILRLCLQKLMVHLGL-EGDKINDDIATLVQKG-LPEEIQQALDICRVVGNNAVHPG-EINIDDSP 161
Cdd:pfam13643   2 EAEKALDADPRAAATMIRRALEALLKDKGIaKGKSLYAKIEDLVAKGvIPPALKELLHAIRVIGNDGAHPGkPLTKDDAE 81


                  .
gi 446623778  162 E 162
Cdd:pfam13643  82 D 82
 
Name Accession Description Interval E-value
DUF4145 pfam13643
Domain of unknown function (DUF4145); This domain is found in a variety of restriction ...
 85-162 7.60e-12

Domain of unknown function (DUF4145); This domain is found in a variety of restriction endonuclease enzymes. The exact function of this domain is uncertain.


Pssm-ID: 433374 [Multi-domain]  Cd Length: 88  Bit Score: 58.87  E-value: 7.60e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446623778   85 EARNIFNLSPKGSAAILRLCLQKLMVHLGL-EGDKINDDIATLVQKG-LPEEIQQALDICRVVGNNAVHPG-EINIDDSP 161
Cdd:pfam13643   2 EAEKALDADPRAAATMIRRALEALLKDKGIaKGKSLYAKIEDLVAKGvIPPALKELLHAIRVIGNDGAHPGkPLTKDDAE 81


                  .
gi 446623778  162 E 162
Cdd:pfam13643  82 D 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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