|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-unk1 |
TIGR02003 |
PTS system, IIBC component; This model represents a family of fused B and C components of PTS ... |
2-545 |
0e+00 |
|
PTS system, IIBC component; This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131058 [Multi-domain] Cd Length: 548 Bit Score: 955.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 2 KITSFDFWQKFGKALLVVVAVMPAAGLMISIGKLIGMSAGDINAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDRA 81
Cdd:TIGR02003 1 KIFRFDFWQKFGKALLVVIAVMPAAGLMISIGKLIGMIAGDSAALASIANIIADIGWAIITNLHILFALAIGGSWAKDRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 82 GGAFAALLAFVLTNRITGAIFGVNAQMLADSKATVSSVLAGDLVVKDYFTSVLGAPALNMGVFVGIITGFLGATLYNKYY 161
Cdd:TIGR02003 81 GGAFAAGLAFVLINRITGAFFGVNAAMLADPEAKISSFIAGDLIVKDYFTSVLEAPALNMGVFVGIIAGFLGATAYNKYY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 162 NYNKLPQALAFFNGKRFVPFVVIVWSTVTAIVLSLLWPFIQSGLNEFGRWIAASKDSAPVVAPFVYGTLERLLLPFGLHH 241
Cdd:TIGR02003 161 NYDKLPEALAFFNGKRFVPFVVILRSIFTAIILSLLWPFIQSGINEFGMWIAASKDSAPILAPFLYGTLERLLLPFGLHH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 242 MLTIPMNYTELGGTYTMLTGSKVGQIVAGQDPLWLAWITDLNNLLASGDTKAYNDLLNNVVPARFKAGQVIGSTAALMGI 321
Cdd:TIGR02003 241 MLTIPMNYTALGGTYEMLTGAAAGQKVAGQDPLWLAWITDLNHLKANGDAKAYNDLLDNVTPARFKAGQMIGATAALMGI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 322 AFAMFRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRVHAFGFIELITR 401
Cdd:TIGR02003 321 AFAMFRNVDADKKAKYKMMFISAAAAVFLTGVTEPIEFLFMFAAMPLYIVYAITQGAAFALADLINLRVHAFGFIELITR 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 402 TPMMVNAGLTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAGNY-IDNEDE-SSEGTGNVQD--GSLATKVIDLL 477
Cdd:TIGR02003 401 TPMALKAGLGMDLINFVIVSILFAGIMFFIADFLIKKFHLATAGRAGNYdADIEDDrASEARGNQQAdsGSLATKIIDLL 480
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446628208 478 GGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDMLGA 545
Cdd:TIGR02003 481 GGAENIADVDACMTRLRVTVKDLAKVAAEADWKKADALGLIQKDKGVQAVYGPKADVLKSDIQDLLDA 548
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
10-541 |
6.08e-88 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 279.29 E-value: 6.08e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 10 QKFGKALLVVVAVMPAAGLMISIGkligmSAGDINAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDRAGGAFAALL 89
Cdd:PRK11089 10 QKVGKSLMLPVSVLPIAGILLGVG-----SANFSWLPAVVSHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 90 AfvltnritgaiFGVNAQMLAdskatvssVLAGdLVVKDYFTSVLGAPALNMGVFVGIITGFLGATLYNKYYNYnKLPQA 169
Cdd:PRK11089 85 A-----------YGIMVKTMA--------VVAP-LVLHLPAEEIAAKHLADTGVLGGIIAGAIAAYMFNRFYRI-KLPEY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 170 LAFFNGKRFVPFVVIVWSTVTAIVLSLLWPFIQSGLNEFGRWiAASKDsaPVVAPFVYGTLERLLLPFGLHHMLTIPMNY 249
Cdd:PRK11089 144 LGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQW-AAYQN--PVVAFGIYGFVERSLVPFGLHHIWNVPFQM 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 250 TelGGTYTmltgSKVGQIVAGQDPLWLAwitdlnnllasGDTKAYNdllnnvvparfKAGQVIGSTAALMGIAFAMFRNV 329
Cdd:PRK11089 221 Q--IGEYT----NAAGQVFHGDIPRYMA-----------GDPTAGK-----------LSGGFLFKMYGLPAAAIAIWHSA 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 330 DKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRV-HAF--GFIELITRTPMMV 406
Cdd:PRK11089 273 KPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDgTSFshGLIDFIVLSGNSS 352
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 407 NAGLtrdlinFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRagnyidnEDESSEGTgnVQDGS-LATKVIDLLGGKENIAD 485
Cdd:PRK11089 353 KLWL------FPIVGIGYAIVYYTIFRVLIKALDLKTPGR-------EDETEDAK--ATGTSeMAPALVAAFGGKENITN 417
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 446628208 486 VDACMTRLRVTVKDLDVVaPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQD 541
Cdd:PRK11089 418 LDACITRLRVSVADVSKV-DQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDE 472
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
6-544 |
7.57e-69 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 229.06 E-value: 7.57e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 6 FDFWQKFGKALLVVVAVMPAAGLMISIGKLIGMSA--GDINAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAkdragg 83
Cdd:COG1263 9 FRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGllGEGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFG------ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 84 afaallafvlTNRITGAIFGVnaqmladskATVSSVLAGDLVVKDYFTSVLGAPAL---NMGVFVGIITGFLGATLyNKY 160
Cdd:COG1263 83 ----------GNPALAAVIGY---------LLVHPTLLNAYAVAGGYISFLGIPTLigyQGGVFPGILAGWLAAYL-EKF 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 161 YNYnKLPQALAFFngkrFVPFVVIVWST-VTAIVLSLLWPFIQSGLNEFGRWIAaskDSAPVVAPFVYGTLERLLLPFGL 239
Cdd:COG1263 143 LKK-KLPDALGFF----FVPILTLLIMVpLALLVIGPIWPPIGNGIAAGLGWIY---GLAGAIGGFIYGFLYRLLVPTGL 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 240 HHMLTIPMNYtELGGTytmltgskvgqivaGQDPLWLAWitdlnnllasgdtkayndllnnvvparfkagqvIGSTAALM 319
Cdd:COG1263 215 HHGLNPIFWF-LLGGT--------------GDDGLFPIL---------------------------------AAAMFGQP 246
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 320 GIAFAMFRNVDKEKraKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRVHAFGFIELI 399
Cdd:COG1263 247 GAALAVYLKAKPNK--KVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSFGVGGLI 324
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 400 TrTPMMVNAGLTRdlINFVIVSLVFFGLNFTLFNFLIkkfnlptpGRAgnyiDNEDESSEGTGNVQDGSLATKVIDLLGG 479
Cdd:COG1263 325 D-FPSILNPGATN--LLLYLIGLVIAFVYYFVFTFLI--------GRE----DEEEEEKLATKADAKKEEAEAAAAALGG 389
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446628208 480 KENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDMLG 544
Cdd:COG1263 390 GGGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIIL 454
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
13-377 |
1.11e-37 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 141.33 E-value: 1.11e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 13 GKALLVVVAVMPAAGLMISIG----KLIGMSAGDINAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDraggafaal 88
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlpnDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGG--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 89 lafvltNRITGAIFGVNaqMLADSKATVSSVLAGdLVVKDYFTSVLGAPALNMGVFVGIITGFLGATLYNKYYNY--NKL 166
Cdd:pfam02378 72 ------DGVAGAAGLIG--LLSFNLAAAISVALT-AAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNitIKL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 167 PQALAFFNGKRFVPFV-VIVWSTVTAIVLSLLWPFIQSGLNEFGRWIaasKDSAPVVAPFVYGTLERLLLPFGLHHMLTI 245
Cdd:pfam02378 143 PDSLPFFVGKRFVPIItGFVTLLVIGPVLGLIWPAIQGGLNALGLLL---IIAGGILGGLIFGFLERLLWPFGLHGAFIA 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 246 PmnytelggtytmltgskvgqivagqdplwlAWITDLNNLLASGDTKAYNDLLNNVVPARFKAgqvigsTAALMGIAFAM 325
Cdd:pfam02378 220 I------------------------------FWFLPIGGSNPIANQQAYGAGAAHILTGGFDV------MFGGPGATLAL 263
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 446628208 326 FRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTG 377
Cdd:pfam02378 264 YAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
469-543 |
8.45e-22 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 89.13 E-value: 8.45e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446628208 469 LATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGP-KADVLKSDIQDML 543
Cdd:cd00212 3 LAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPgVADVYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-unk1 |
TIGR02003 |
PTS system, IIBC component; This model represents a family of fused B and C components of PTS ... |
2-545 |
0e+00 |
|
PTS system, IIBC component; This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131058 [Multi-domain] Cd Length: 548 Bit Score: 955.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 2 KITSFDFWQKFGKALLVVVAVMPAAGLMISIGKLIGMSAGDINAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDRA 81
Cdd:TIGR02003 1 KIFRFDFWQKFGKALLVVIAVMPAAGLMISIGKLIGMIAGDSAALASIANIIADIGWAIITNLHILFALAIGGSWAKDRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 82 GGAFAALLAFVLTNRITGAIFGVNAQMLADSKATVSSVLAGDLVVKDYFTSVLGAPALNMGVFVGIITGFLGATLYNKYY 161
Cdd:TIGR02003 81 GGAFAAGLAFVLINRITGAFFGVNAAMLADPEAKISSFIAGDLIVKDYFTSVLEAPALNMGVFVGIIAGFLGATAYNKYY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 162 NYNKLPQALAFFNGKRFVPFVVIVWSTVTAIVLSLLWPFIQSGLNEFGRWIAASKDSAPVVAPFVYGTLERLLLPFGLHH 241
Cdd:TIGR02003 161 NYDKLPEALAFFNGKRFVPFVVILRSIFTAIILSLLWPFIQSGINEFGMWIAASKDSAPILAPFLYGTLERLLLPFGLHH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 242 MLTIPMNYTELGGTYTMLTGSKVGQIVAGQDPLWLAWITDLNNLLASGDTKAYNDLLNNVVPARFKAGQVIGSTAALMGI 321
Cdd:TIGR02003 241 MLTIPMNYTALGGTYEMLTGAAAGQKVAGQDPLWLAWITDLNHLKANGDAKAYNDLLDNVTPARFKAGQMIGATAALMGI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 322 AFAMFRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRVHAFGFIELITR 401
Cdd:TIGR02003 321 AFAMFRNVDADKKAKYKMMFISAAAAVFLTGVTEPIEFLFMFAAMPLYIVYAITQGAAFALADLINLRVHAFGFIELITR 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 402 TPMMVNAGLTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAGNY-IDNEDE-SSEGTGNVQD--GSLATKVIDLL 477
Cdd:TIGR02003 401 TPMALKAGLGMDLINFVIVSILFAGIMFFIADFLIKKFHLATAGRAGNYdADIEDDrASEARGNQQAdsGSLATKIIDLL 480
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446628208 478 GGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDMLGA 545
Cdd:TIGR02003 481 GGAENIADVDACMTRLRVTVKDLAKVAAEADWKKADALGLIQKDKGVQAVYGPKADVLKSDIQDLLDA 548
|
|
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
6-543 |
3.32e-101 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 314.41 E-value: 3.32e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 6 FDFWQKFGKALLVVVAVMPAAGLMISIGKLIG-------MSAGDINAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAK 78
Cdd:TIGR02002 5 FGQLQKIGKALMLPVAVLPVAGILLGFGNANQnnqvfsfLPFLHMEWIQLVSKVMEAAGGIIFANLPLIFAIGVALGLAG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 79 DRAGGAFAALLAFVLTNRITGAIFGVNAQMLADSKATvssvlagdlvvkdyFTSVLGAPALNMGVFVGIITGFLGATLYN 158
Cdd:TIGR02002 85 NDGVAGLAALVGYLIMNKTMGVVAGLTLLLIASEIAS--------------FASVLGIPTLQTGVFGGIIIGAIAAYCYN 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 159 KYYNYnKLPQALAFFNGKRFVPFVVIVWSTVTAIVLSLLWPFIQSGLNEFGRWIAaskDSAPVVAPFVYGTLERLLLPFG 238
Cdd:TIGR02002 151 RFYNI-KLPEYLGFFAGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHWAA---YQNPVVAFFIFGFIERSLIPFG 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 239 LHHMLTIPMNYTElgGTYTmltgSKVGQIVAGQDPLWLAWITDLNNLLASGdtkayndllnnvvparFKAGQVIGSTAAL 318
Cdd:TIGR02002 227 LHHIFNAPFWFEF--GSYT----NEAGNLFRGDQPIFMAQLKDGVAFTAGG----------------FLSGGFPFMMFGL 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 319 MGIAFAMFRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRV---HAFGF 395
Cdd:TIGR02002 285 PAAALAIYHSAKPENKKLVGGLMISAALTSFLTGITEPLEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIgttFSGGA 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 396 IELITrTPMMVNaglTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRagnyidnEDESSEGTGNVQDGSLATKVID 475
Cdd:TIGR02002 365 IDFIL-YGLLSN---RSKAWLFIIVGIGYAIIYYFLFRFLIKKLNLKTPGR-------EDATAEAKATGEPSELAFDVVA 433
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446628208 476 LLGGKENIADVDACMTRLRVTVKDLDVVApEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDML 543
Cdd:TIGR02002 434 ALGGKENITSLDACITRLRVSVADISKVD-VAKLKKLGAAGVLVVGNNVQAIFGPKSDTIKSEMHDII 500
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
10-541 |
6.08e-88 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 279.29 E-value: 6.08e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 10 QKFGKALLVVVAVMPAAGLMISIGkligmSAGDINAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDRAGGAFAALL 89
Cdd:PRK11089 10 QKVGKSLMLPVSVLPIAGILLGVG-----SANFSWLPAVVSHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 90 AfvltnritgaiFGVNAQMLAdskatvssVLAGdLVVKDYFTSVLGAPALNMGVFVGIITGFLGATLYNKYYNYnKLPQA 169
Cdd:PRK11089 85 A-----------YGIMVKTMA--------VVAP-LVLHLPAEEIAAKHLADTGVLGGIIAGAIAAYMFNRFYRI-KLPEY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 170 LAFFNGKRFVPFVVIVWSTVTAIVLSLLWPFIQSGLNEFGRWiAASKDsaPVVAPFVYGTLERLLLPFGLHHMLTIPMNY 249
Cdd:PRK11089 144 LGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQW-AAYQN--PVVAFGIYGFVERSLVPFGLHHIWNVPFQM 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 250 TelGGTYTmltgSKVGQIVAGQDPLWLAwitdlnnllasGDTKAYNdllnnvvparfKAGQVIGSTAALMGIAFAMFRNV 329
Cdd:PRK11089 221 Q--IGEYT----NAAGQVFHGDIPRYMA-----------GDPTAGK-----------LSGGFLFKMYGLPAAAIAIWHSA 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 330 DKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRV-HAF--GFIELITRTPMMV 406
Cdd:PRK11089 273 KPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDgTSFshGLIDFIVLSGNSS 352
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 407 NAGLtrdlinFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRagnyidnEDESSEGTgnVQDGS-LATKVIDLLGGKENIAD 485
Cdd:PRK11089 353 KLWL------FPIVGIGYAIVYYTIFRVLIKALDLKTPGR-------EDETEDAK--ATGTSeMAPALVAAFGGKENITN 417
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 446628208 486 VDACMTRLRVTVKDLDVVaPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQD 541
Cdd:PRK11089 418 LDACITRLRVSVADVSKV-DQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDE 472
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
8-540 |
6.24e-81 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 260.86 E-value: 6.24e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 8 FWQKFGKALLVVVAVMPAAGLMISIGKLIGmsagdiNAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDR--AGGAF 85
Cdd:TIGR01998 4 YFQKLGRALMLPIATLPVAALLLRIGNATH------GADLLVANFFIAAGGAIFDNLGLLFAIGVAIGMSKDNdgAAALA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 86 AALLAFVLTnriTGAIFGVNAQMLADSKATVSSVLAGDlvvkdyftsvlgapalnmGVFVGIITGFLGATLYNKYYNYnK 165
Cdd:TIGR01998 78 GLVAYFVVT---KVLSPPPLAAALGIKSEINMAFSAWK------------------NVFVGILAGLIAGALYNRFSEI-K 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 166 LPQALAFFNGKRFVPFVVIVWSTVTAIVLSLLWPFIQSGLNEFGRWIAASKDsapvVAPFVYGTLERLLLPFGLHHMLTi 245
Cdd:TIGR01998 136 LPEALSFFSGKRLVPIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGA----LGAGIYGFLNRLLIPTGLHHALN- 210
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 246 pmnytelggtytmltgSKVGQIVAGqdplwlawITDLNNLLASGDTKAYNDllnnvVPARFKAGQVIGSTAALMGIAFAM 325
Cdd:TIGR01998 211 ----------------SVFWFDVAG--------INDFGNFTGGGDLNRFKG-----IAGMFMAGFFPIMMFGLPAAALAM 261
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 326 FRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLrVHAFGFIELITRTPMM 405
Cdd:TIGR01998 262 YHTARPERRKQVGGMLLSVAFASFLTGVTEPLEFSFMFLAPVLYALHALLTGLSLFIAAMLHW-TAGFSFSAGLIDYVLS 340
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 406 VNAGLTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAGNYIDNEDESSEGTGNVQDGSLATKVIDLLGGKENIAD 485
Cdd:TIGR01998 341 FNNPTANQPLMLLVQGLVFFALYYVVFRFAIRRFNLKTPGREDEDPEGATAAAVTSTGDSKMQLAKQYLAALGGHDNLVS 420
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 446628208 486 VDACMTRLRVTVKDLDVVaPEAQWKQNGALGLIVKDK-GVQAVYGPKADVLKSDIQ 540
Cdd:TIGR01998 421 IDACITRLRLTLKDTSIV-DEPALKALGARGVVKLGKhNLQVILGPLAEIVAGEMK 475
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
6-544 |
7.57e-69 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 229.06 E-value: 7.57e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 6 FDFWQKFGKALLVVVAVMPAAGLMISIGKLIGMSA--GDINAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAkdragg 83
Cdd:COG1263 9 FRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGllGEGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFG------ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 84 afaallafvlTNRITGAIFGVnaqmladskATVSSVLAGDLVVKDYFTSVLGAPAL---NMGVFVGIITGFLGATLyNKY 160
Cdd:COG1263 83 ----------GNPALAAVIGY---------LLVHPTLLNAYAVAGGYISFLGIPTLigyQGGVFPGILAGWLAAYL-EKF 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 161 YNYnKLPQALAFFngkrFVPFVVIVWST-VTAIVLSLLWPFIQSGLNEFGRWIAaskDSAPVVAPFVYGTLERLLLPFGL 239
Cdd:COG1263 143 LKK-KLPDALGFF----FVPILTLLIMVpLALLVIGPIWPPIGNGIAAGLGWIY---GLAGAIGGFIYGFLYRLLVPTGL 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 240 HHMLTIPMNYtELGGTytmltgskvgqivaGQDPLWLAWitdlnnllasgdtkayndllnnvvparfkagqvIGSTAALM 319
Cdd:COG1263 215 HHGLNPIFWF-LLGGT--------------GDDGLFPIL---------------------------------AAAMFGQP 246
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 320 GIAFAMFRNVDKEKraKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRVHAFGFIELI 399
Cdd:COG1263 247 GAALAVYLKAKPNK--KVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSFGVGGLI 324
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 400 TrTPMMVNAGLTRdlINFVIVSLVFFGLNFTLFNFLIkkfnlptpGRAgnyiDNEDESSEGTGNVQDGSLATKVIDLLGG 479
Cdd:COG1263 325 D-FPSILNPGATN--LLLYLIGLVIAFVYYFVFTFLI--------GRE----DEEEEEKLATKADAKKEEAEAAAAALGG 389
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446628208 480 KENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDMLG 544
Cdd:COG1263 390 GGGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIIL 454
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
2-545 |
6.04e-68 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 228.46 E-value: 6.04e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 2 KITSFDFWQKFGKALLVVVAVMPAAGLMISIGKLIG-------MSAGDINAVHTIARVMEDIGWAIITNLHILFAVAIGG 74
Cdd:PRK10110 8 KVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSshdvitlIPFLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 75 SWAKDRAGGAFAallafvltnritGAIFGVNAQMLA-DSKATVSSVLAGD--LVVKDY-FTSVLGAPALNMGVFVGIITG 150
Cdd:PRK10110 88 GLARENKGVAAF------------AGFVGYAVMNLAvNFWLTNKGILPTTdaAVLKANnIQSILGIQSIDTGILGAVIAG 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 151 FLGATLYNKYYNYnKLPQALAFFNGKRFVPFVVIVWSTVTAIVLSLLWPFIQSGLNEFGRWIAaskdSAPVVAPFVYGTL 230
Cdd:PRK10110 156 IIVWMLHERFHNI-RLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMIN----SAGDFGPMLFGTG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 231 ERLLLPFGLHHMLTIPMNYTELGGTYTMltgskVGQIVAGQDPLWLAwitDLNNLLASGDTKAYNDLLNNVVPARFKAGq 310
Cdd:PRK10110 231 ERLLLPFGLHHILVALIRFTDAGGTQEV-----CGQTVSGALTIFQA---QLSCPTTHGFSESATRFLSQGKMPAFLGG- 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 311 vigstaaLMGIAFAMFRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRV 390
Cdd:PRK10110 302 -------LPGAALAMYHCARPENRHKIKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTI 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 391 -HAFGfiELITRTPMMVNAGLTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAGNYIDNEDESSEGTGNvQDGSL 469
Cdd:PRK10110 375 gNTDG--NIIDFVVFGILHGLSTKWYMVPVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPG-KSGYN 451
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446628208 470 ATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVaPEAQWKQNGALGLI-VKDKGVQAVYGPKADVLKSDIQDMLGA 545
Cdd:PRK10110 452 VPAILEALGGADNIVSLDNCITRLRLSVKDMSLV-DVQALKDNRAIGVVqLNQHNLQVVIGPQVQSVKDEMAGLMHT 527
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
8-533 |
8.26e-62 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 214.73 E-value: 8.26e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 8 FWQKFGKALLVVVAVMPAAGLMISIGKligmsaGDINAVHTIARVmediGWAIITNLHILFAVAIGGSWAKDraggafaa 87
Cdd:PRK10255 6 FFQRLGRALQLPIAVLPVAALLLRFGQ------PDLLNVAFIAQA----GGAIFDNLALIFAIGVASSWSKD-------- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 88 llafvltnritgaifgvNAQMLADSKATVSSVLAGDLVVKDyftsvlgaPALNMGVFVGIITGFLGATLYNKYYNYnKLP 167
Cdd:PRK10255 68 -----------------SAGAAALAGAVGYFVLTKAMVTIN--------PEINMGVLAGIITGLVGGAAYNRWSDI-KLP 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 168 QALAFFNGKRFVPFVVIVWSTVTAIVLSLLWPFIQSGLNEFGRWIAaskdSAPVVAPFVYGTLERLLLPFGLHHMLTIpM 247
Cdd:PRK10255 122 DFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIV----SAGALGSGIFGFINRLLIPTGLHQVLNT-I 196
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 248 NYTELGgTYTmltgSKVGQIVAGqdplwlawitDLNNLLAsGDTKAyndllnnvvpARFKAGQVIGSTAALMGIAFAMFR 327
Cdd:PRK10255 197 AWFQIG-EFT----NAAGTVFHG----------DINRFYA-GDGTA----------GMFMSGFFPIMMFGLPGAALAMYF 250
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 328 NVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLinLRVHA-FGFIELITRTPMMV 406
Cdd:PRK10255 251 AAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATL--LGIHAgFSFSAGAIDYALMY 328
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 407 N-AGLTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAgnyiDNEDE--SSEGTGNVQDG--SLATKVIDLLGGKE 481
Cdd:PRK10255 329 NlPAASQNVWMLLVMGVVFFAIYFVLFSAVIRMFNLKTPGRE----DKEDEivTEEANSNTEEGltQLATNYIAAVGGTD 404
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 446628208 482 NIADVDACMTRLRVTVKDLDVVApEAQWKQNGALGLIVKDK-GVQAVYGPKAD 533
Cdd:PRK10255 405 NLKAIDACITRLRLTVADSARVN-DAMCKRLGASGVVKLNKqTIQVIVGAKAE 456
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
13-377 |
1.11e-37 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 141.33 E-value: 1.11e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 13 GKALLVVVAVMPAAGLMISIG----KLIGMSAGDINAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDraggafaal 88
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlpnDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGG--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 89 lafvltNRITGAIFGVNaqMLADSKATVSSVLAGdLVVKDYFTSVLGAPALNMGVFVGIITGFLGATLYNKYYNY--NKL 166
Cdd:pfam02378 72 ------DGVAGAAGLIG--LLSFNLAAAISVALT-AAGLSGGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNitIKL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 167 PQALAFFNGKRFVPFV-VIVWSTVTAIVLSLLWPFIQSGLNEFGRWIaasKDSAPVVAPFVYGTLERLLLPFGLHHMLTI 245
Cdd:pfam02378 143 PDSLPFFVGKRFVPIItGFVTLLVIGPVLGLIWPAIQGGLNALGLLL---IIAGGILGGLIFGFLERLLWPFGLHGAFIA 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 246 PmnytelggtytmltgskvgqivagqdplwlAWITDLNNLLASGDTKAYNDLLNNVVPARFKAgqvigsTAALMGIAFAM 325
Cdd:pfam02378 220 I------------------------------FWFLPIGGSNPIANQQAYGAGAAHILTGGFDV------MFGGPGATLAL 263
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 446628208 326 FRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTG 377
Cdd:pfam02378 264 YAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
57-383 |
1.09e-29 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 118.19 E-value: 1.09e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 57 GWAIITNLHILFAVAIGGSWAKdraggafaallafvltNRITGAIFG---VNAQMLA--DSKATVSSVLAGDLVVKDYFT 131
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGG----------------NPYLGAALAgilVHPVLNNamGVGAQAVGNFFGFEIAKVGYT 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 132 SVLGapalnmGVFVGIITGFLGATLYNKyynynKLPQALAFFNGKRFVPFVVIVWSTVTAIVLSLLWPFIqsGLNEFGRW 211
Cdd:TIGR00852 65 GVVG------PIIVGAIALALHERFLDK-----KLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPV--GISALLHW 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 212 IAaskDSAPVVAPFVYGTLERLLLPFGLHHMLTIPMNYTELGGTytmltgskvgqiVAGQDPLWLAWITDLNNLLASGdt 291
Cdd:TIGR00852 132 LY---SAGGALGGAIFGFLYRLLVPTGLHHIFYAIFIQLIAGGT------------VIGGGQVIPGDALANMAQGGAA-- 194
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 292 kayndlLNNVVPARFKAGQVIGSTAALM----GIAFAMFRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPV 367
Cdd:TIGR00852 195 ------LAVFFTAGDAKFKSIGLPAAFSaglgITEPAMYGVALRERRPFVAGLIGSALLTAFLTGITEPLEFLFLFGAPG 268
|
330
....*....|....*.
gi 446628208 368 LYVVYAITTGLAFALA 383
Cdd:TIGR00852 269 LYSIHAVLAGSIFTVA 284
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
469-543 |
2.92e-26 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 101.73 E-value: 2.92e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446628208 469 LATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVaPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDML 543
Cdd:COG1264 3 LAKDILEALGGKENIVSVDHCATRLRVTVKDPSKV-DEAALKKLGVKGVVKNGGQVQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
469-543 |
8.45e-22 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 89.13 E-value: 8.45e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446628208 469 LATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGP-KADVLKSDIQDML 543
Cdd:cd00212 3 LAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPgVADVYKEAIKLLG 78
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
437-529 |
8.25e-15 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 69.69 E-value: 8.25e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 437 KKFNLPTPGRAGNYIDNEDESSEGTGNVQdgslATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVApEAQWKQNGALG 516
Cdd:TIGR00826 1 TRLRLKTPGREKADEEAIAAGEGVKGVFT----AAGQIQALGGTGNVNKVDACITRLRVGVADVSKVD-DAVLKKLGAHG 75
|
90
....*....|...
gi 446628208 517 LIVKDKGVQAVYG 529
Cdd:TIGR00826 76 VNPLQRAVQVISG 88
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
472-499 |
5.43e-13 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 62.77 E-value: 5.43e-13
10 20
....*....|....*....|....*...
gi 446628208 472 KVIDLLGGKENIADVDACMTRLRVTVKD 499
Cdd:pfam00367 2 EILEALGGKENIKSVDHCATRLRLTVKD 29
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
414-545 |
1.78e-09 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 56.64 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 414 LINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAGN----YIDNEDESSEGTGNV----QDGSLATKVIDLLGGKENIAD 485
Cdd:PRK09702 9 MLTQIAIGLCFTLLYFVVFRTLILQFNMCTPGREDAevklYSKAEYKASRGQTTAaepkKELDQAAGILQALGGVGNISS 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628208 486 VDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDMLGA 545
Cdd:PRK09702 89 INNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINS 148
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
468-530 |
6.46e-07 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 51.99 E-value: 6.46e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446628208 468 SLATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGP 530
Cdd:PRK09586 7 ELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGP 69
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
469-529 |
4.70e-05 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 45.94 E-value: 4.70e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446628208 469 LATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYG 529
Cdd:PRK09796 8 LARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIG 68
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
469-531 |
8.70e-05 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 45.02 E-value: 8.70e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446628208 469 LATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPK 531
Cdd:PRK14905 277 IAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGAG 339
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
469-545 |
9.86e-05 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 45.03 E-value: 9.86e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446628208 469 LATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDMLGA 545
Cdd:TIGR01995 4 LAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDVLGL 80
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
471-507 |
1.75e-03 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 40.82 E-value: 1.75e-03
10 20 30
....*....|....*....|....*....|....*..
gi 446628208 471 TKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEA 507
Cdd:PRK11007 11 DRLIELVGGRENIATVSHCITRLRFVLNDPANADPKE 47
|
|
| |
