|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-unk1 |
TIGR02003 |
PTS system, IIBC component; This model represents a family of fused B and C components of PTS ... |
2-545 |
0e+00 |
|
PTS system, IIBC component; This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131058 [Multi-domain] Cd Length: 548 Bit Score: 925.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 2 KITSFDFWQKFGKALLVVVAVMPAAGLMISIGKLIGMSAGDVNAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDRA 81
Cdd:TIGR02003 1 KIFRFDFWQKFGKALLVVIAVMPAAGLMISIGKLIGMIAGDSAALASIANIIADIGWAIITNLHILFALAIGGSWAKDRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 82 GGAFAALLAFVLTNRITGAIFGVNAQMLADSKATVSSVIAGDLLVKDYFTSVLGAPALNMGVFVGIITGFLGANLYNKYY 161
Cdd:TIGR02003 81 GGAFAAGLAFVLINRITGAFFGVNAAMLADPEAKISSFIAGDLIVKDYFTSVLEAPALNMGVFVGIIAGFLGATAYNKYY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 162 NYNKLPQALAFFNGKRFVPFVVILWSTVTAIVLSLLWPFIQSGLNEFGRWIAASKDSAPVVAPFVYGTLERLLLPFGLHH 241
Cdd:TIGR02003 161 NYDKLPEALAFFNGKRFVPFVVILRSIFTAIILSLLWPFIQSGINEFGMWIAASKDSAPILAPFLYGTLERLLLPFGLHH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 242 MLTIPMNYTELGGTYTMLTGSKVGQVVAGQDPLWLAWITDLNNLLANGDTKAYNDLLNNVVPARFKAGQVIGSTAALMGI 321
Cdd:TIGR02003 241 MLTIPMNYTALGGTYEMLTGAAAGQKVAGQDPLWLAWITDLNHLKANGDAKAYNDLLDNVTPARFKAGQMIGATAALMGI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 322 AFAMFRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRVHAFGFIELITR 401
Cdd:TIGR02003 321 AFAMFRNVDADKKAKYKMMFISAAAAVFLTGVTEPIEFLFMFAAMPLYIVYAITQGAAFALADLINLRVHAFGFIELITR 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 402 TPMMVNAGLTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAGNY-IDNEDE-ASEGTENVQD--GSLATKVIDLL 477
Cdd:TIGR02003 401 TPMALKAGLGMDLINFVIVSILFAGIMFFIADFLIKKFHLATAGRAGNYdADIEDDrASEARGNQQAdsGSLATKIIDLL 480
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446628222 478 GGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDMLGA 545
Cdd:TIGR02003 481 GGAENIADVDACMTRLRVTVKDLAKVAAEADWKKADALGLIQKDKGVQAVYGPKADVLKSDIQDLLDA 548
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
10-541 |
1.10e-81 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 263.11 E-value: 1.10e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 10 QKFGKALLVVVAVMPAAGLMISIGkligmSAGDVNAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDRAGGAFAALL 89
Cdd:PRK11089 10 QKVGKSLMLPVSVLPIAGILLGVG-----SANFSWLPAVVSHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 90 AfvltnritgaiFGVNAQMLAdskatvssVIAGdLLVKDYFTSVLGAPALNMGVFVGIITGFLGANLYNKYYNYNKlPQA 169
Cdd:PRK11089 85 A-----------YGIMVKTMA--------VVAP-LVLHLPAEEIAAKHLADTGVLGGIIAGAIAAYMFNRFYRIKL-PEY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 170 LAFFNGKRFVPFVVILWSTVTAIVLSLLWPFIQSGLNEFGRWiAASKDsaPVVAPFVYGTLERLLLPFGLHHMLTIPMNY 249
Cdd:PRK11089 144 LGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQW-AAYQN--PVVAFGIYGFVERSLVPFGLHHIWNVPFQM 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 250 TelGGTYTmltgSKVGQVVAGQDPLWLAwitdlnnllanGDTKAYNdllnnvvparfKAGQVIGSTAALMGIAFAMFRNV 329
Cdd:PRK11089 221 Q--IGEYT----NAAGQVFHGDIPRYMA-----------GDPTAGK-----------LSGGFLFKMYGLPAAAIAIWHSA 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 330 DKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRV-HAF--GFIELItrtpmmV 406
Cdd:PRK11089 273 KPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDgTSFshGLIDFI------V 346
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 407 NAGLTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRagnyidnEDEASEgtENVQDGS-LATKVIDLLGGKENIAD 485
Cdd:PRK11089 347 LSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGR-------EDETED--AKATGTSeMAPALVAAFGGKENITN 417
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 446628222 486 VDACMTRLRVTVKDLDVVaPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQD 541
Cdd:PRK11089 418 LDACITRLRVSVADVSKV-DQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDE 472
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
6-544 |
8.40e-63 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 212.88 E-value: 8.40e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 6 FDFWQKFGKALLVVVAVMPAAGLMISIGKLIGMSA--GDVNAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAkdragg 83
Cdd:COG1263 9 FRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGllGEGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFG------ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 84 afaallafvlTNRITGAIFGVnaqmladskATVSSVIAGDLLVKDYFTSVLGAPAL---NMGVFVGIITGFLGANLYNKY 160
Cdd:COG1263 83 ----------GNPALAAVIGY---------LLVHPTLLNAYAVAGGYISFLGIPTLigyQGGVFPGILAGWLAAYLEKFL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 161 YNYNklPQALAFFngkrFVPFVVILWST-VTAIVLSLLWPFIQSGLNEFGRWIAaskDSAPVVAPFVYGTLERLLLPFGL 239
Cdd:COG1263 144 KKKL--PDALGFF----FVPILTLLIMVpLALLVIGPIWPPIGNGIAAGLGWIY---GLAGAIGGFIYGFLYRLLVPTGL 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 240 HHMLTIPMNYtELGGTytmltgskvgqvvaGQDPLWLAWitdlnnllangdtkayndllnnvvparfkagqvIGSTAALM 319
Cdd:COG1263 215 HHGLNPIFWF-LLGGT--------------GDDGLFPIL---------------------------------AAAMFGQP 246
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 320 GIAFAMFRNVDKEKraKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRVHAFGFIELI 399
Cdd:COG1263 247 GAALAVYLKAKPNK--KVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSFGVGGLI 324
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 400 TrTPMMVNAGLTRdlINFVIVSLVFFGLNFTLFNFLIkkfnlptpGRAgnyiDNEDEASEGTENVQDGSLATKVIDLLGG 479
Cdd:COG1263 325 D-FPSILNPGATN--LLLYLIGLVIAFVYYFVFTFLI--------GRE----DEEEEEKLATKADAKKEEAEAAAAALGG 389
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446628222 480 KENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDMLG 544
Cdd:COG1263 390 GGGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIIL 454
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
13-377 |
5.66e-31 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 122.46 E-value: 5.66e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 13 GKALLVVVAVMPAAGLMISIG----KLIGMSAGDVNAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDraggafaal 88
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlpnDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGG--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 89 lafvltNRITGAIFGVNaqMLADSKATVSSVIAGDLLVKdYFTSVLGAPALNMGVFVGIITGFLGANLYNKYYNYNKL-- 166
Cdd:pfam02378 72 ------DGVAGAAGLIG--LLSFNLAAAISVALTAAGLS-GGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIkl 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 167 PQALAFFNGKRFVPFVVILWS-TVTAIVLSLLWPFIQSGLNEFGRWIaasKDSAPVVAPFVYGTLERLLLPFGLHHMLTI 245
Cdd:pfam02378 143 PDSLPFFVGKRFVPIITGFVTlLVIGPVLGLIWPAIQGGLNALGLLL---IIAGGILGGLIFGFLERLLWPFGLHGAFIA 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 246 PmnytelggtytmltgskvgqvvagqdplwlAWITDLNNLLANGDTKAYNDLLNNVVPARFKAgqvigsTAALMGIAFAM 325
Cdd:pfam02378 220 I------------------------------FWFLPIGGSNPIANQQAYGAGAAHILTGGFDV------MFGGPGATLAL 263
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 446628222 326 FRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTG 377
Cdd:pfam02378 264 YAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
469-543 |
1.13e-21 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 88.74 E-value: 1.13e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446628222 469 LATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGP-KADVLKSDIQDML 543
Cdd:cd00212 3 LAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPgVADVYKEAIKLLG 78
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PTS-II-BC-unk1 |
TIGR02003 |
PTS system, IIBC component; This model represents a family of fused B and C components of PTS ... |
2-545 |
0e+00 |
|
PTS system, IIBC component; This model represents a family of fused B and C components of PTS enzyme II. This clade is a member of a larger family which contains enzyme II's specific for a variety of sugars including glucose (TIGR02002) and N-acetylglucosamine (TIGR01998). None of the members of this clade have been experimentally characterized. This clade includes sequences from Streptococcus and Enterococcus which also include a C-terminal A domain as well as Bacillus and Clostridium which do not. In nearly all cases, these species also contain an authentic glucose-specific PTS transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131058 [Multi-domain] Cd Length: 548 Bit Score: 925.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 2 KITSFDFWQKFGKALLVVVAVMPAAGLMISIGKLIGMSAGDVNAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDRA 81
Cdd:TIGR02003 1 KIFRFDFWQKFGKALLVVIAVMPAAGLMISIGKLIGMIAGDSAALASIANIIADIGWAIITNLHILFALAIGGSWAKDRA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 82 GGAFAALLAFVLTNRITGAIFGVNAQMLADSKATVSSVIAGDLLVKDYFTSVLGAPALNMGVFVGIITGFLGANLYNKYY 161
Cdd:TIGR02003 81 GGAFAAGLAFVLINRITGAFFGVNAAMLADPEAKISSFIAGDLIVKDYFTSVLEAPALNMGVFVGIIAGFLGATAYNKYY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 162 NYNKLPQALAFFNGKRFVPFVVILWSTVTAIVLSLLWPFIQSGLNEFGRWIAASKDSAPVVAPFVYGTLERLLLPFGLHH 241
Cdd:TIGR02003 161 NYDKLPEALAFFNGKRFVPFVVILRSIFTAIILSLLWPFIQSGINEFGMWIAASKDSAPILAPFLYGTLERLLLPFGLHH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 242 MLTIPMNYTELGGTYTMLTGSKVGQVVAGQDPLWLAWITDLNNLLANGDTKAYNDLLNNVVPARFKAGQVIGSTAALMGI 321
Cdd:TIGR02003 241 MLTIPMNYTALGGTYEMLTGAAAGQKVAGQDPLWLAWITDLNHLKANGDAKAYNDLLDNVTPARFKAGQMIGATAALMGI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 322 AFAMFRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRVHAFGFIELITR 401
Cdd:TIGR02003 321 AFAMFRNVDADKKAKYKMMFISAAAAVFLTGVTEPIEFLFMFAAMPLYIVYAITQGAAFALADLINLRVHAFGFIELITR 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 402 TPMMVNAGLTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAGNY-IDNEDE-ASEGTENVQD--GSLATKVIDLL 477
Cdd:TIGR02003 401 TPMALKAGLGMDLINFVIVSILFAGIMFFIADFLIKKFHLATAGRAGNYdADIEDDrASEARGNQQAdsGSLATKIIDLL 480
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446628222 478 GGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDMLGA 545
Cdd:TIGR02003 481 GGAENIADVDACMTRLRVTVKDLAKVAAEADWKKADALGLIQKDKGVQAVYGPKADVLKSDIQDLLDA 548
|
|
| PTS-II-BC-glcB |
TIGR02002 |
PTS system, glucose-specific IIBC component; This model represents the combined B and C ... |
6-543 |
2.30e-93 |
|
PTS system, glucose-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273923 [Multi-domain] Cd Length: 502 Bit Score: 294.00 E-value: 2.30e-93
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 6 FDFWQKFGKALLVVVAVMPAAGLMISIGKLIG-------MSAGDVNAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAK 78
Cdd:TIGR02002 5 FGQLQKIGKALMLPVAVLPVAGILLGFGNANQnnqvfsfLPFLHMEWIQLVSKVMEAAGGIIFANLPLIFAIGVALGLAG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 79 DRAGGAFAALLAFVLTNRITGAIFGVNAQMLADSKATvssviagdllvkdyFTSVLGAPALNMGVFVGIITGFLGANLYN 158
Cdd:TIGR02002 85 NDGVAGLAALVGYLIMNKTMGVVAGLTLLLIASEIAS--------------FASVLGIPTLQTGVFGGIIIGAIAAYCYN 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 159 KYYNYNKlPQALAFFNGKRFVPFVVILWSTVTAIVLSLLWPFIQSGLNEFGRWIAaskDSAPVVAPFVYGTLERLLLPFG 238
Cdd:TIGR02002 151 RFYNIKL-PEYLGFFAGKRFVPIITGLAAIVTGIVLSFIWPPVQDALNTFSHWAA---YQNPVVAFFIFGFIERSLIPFG 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 239 LHHMLTIPMNYTElgGTYTmltgSKVGQVVAGQDPLWLAWITDLNNLLANGdtkayndllnnvvparFKAGQVIGSTAAL 318
Cdd:TIGR02002 227 LHHIFNAPFWFEF--GSYT----NEAGNLFRGDQPIFMAQLKDGVAFTAGG----------------FLSGGFPFMMFGL 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 319 MGIAFAMFRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRV---HAFGF 395
Cdd:TIGR02002 285 PAAALAIYHSAKPENKKLVGGLMISAALTSFLTGITEPLEFSFLFVAPILYVIHAILAGLSFPIMILLGVKIgttFSGGA 364
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 396 IELITrTPMMVNaglTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRagnyidnEDEASEGTENVQDGSLATKVID 475
Cdd:TIGR02002 365 IDFIL-YGLLSN---RSKAWLFIIVGIGYAIIYYFLFRFLIKKLNLKTPGR-------EDATAEAKATGEPSELAFDVVA 433
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446628222 476 LLGGKENIADVDACMTRLRVTVKDLDVVaPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDML 543
Cdd:TIGR02002 434 ALGGKENITSLDACITRLRVSVADISKV-DVAKLKKLGAAGVLVVGNNVQAIFGPKSDTIKSEMHDII 500
|
|
| PRK11089 |
PRK11089 |
PTS system glucose-specific transporter subunits IIBC; Provisional |
10-541 |
1.10e-81 |
|
PTS system glucose-specific transporter subunits IIBC; Provisional
Pssm-ID: 182955 [Multi-domain] Cd Length: 477 Bit Score: 263.11 E-value: 1.10e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 10 QKFGKALLVVVAVMPAAGLMISIGkligmSAGDVNAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDRAGGAFAALL 89
Cdd:PRK11089 10 QKVGKSLMLPVSVLPIAGILLGVG-----SANFSWLPAVVSHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 90 AfvltnritgaiFGVNAQMLAdskatvssVIAGdLLVKDYFTSVLGAPALNMGVFVGIITGFLGANLYNKYYNYNKlPQA 169
Cdd:PRK11089 85 A-----------YGIMVKTMA--------VVAP-LVLHLPAEEIAAKHLADTGVLGGIIAGAIAAYMFNRFYRIKL-PEY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 170 LAFFNGKRFVPFVVILWSTVTAIVLSLLWPFIQSGLNEFGRWiAASKDsaPVVAPFVYGTLERLLLPFGLHHMLTIPMNY 249
Cdd:PRK11089 144 LGFFAGKRFVPIISGLAAIFTGVVLSFIWPPIGSAIQTFSQW-AAYQN--PVVAFGIYGFVERSLVPFGLHHIWNVPFQM 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 250 TelGGTYTmltgSKVGQVVAGQDPLWLAwitdlnnllanGDTKAYNdllnnvvparfKAGQVIGSTAALMGIAFAMFRNV 329
Cdd:PRK11089 221 Q--IGEYT----NAAGQVFHGDIPRYMA-----------GDPTAGK-----------LSGGFLFKMYGLPAAAIAIWHSA 272
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 330 DKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRV-HAF--GFIELItrtpmmV 406
Cdd:PRK11089 273 KPENRAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDgTSFshGLIDFI------V 346
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 407 NAGLTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRagnyidnEDEASEgtENVQDGS-LATKVIDLLGGKENIAD 485
Cdd:PRK11089 347 LSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGR-------EDETED--AKATGTSeMAPALVAAFGGKENITN 417
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 446628222 486 VDACMTRLRVTVKDLDVVaPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQD 541
Cdd:PRK11089 418 LDACITRLRVSVADVSKV-DQAGLKKLGAAGVVVAGSGVQAIFGTKSDNLKTEMDE 472
|
|
| PTS-II-BC-nag |
TIGR01998 |
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B ... |
8-540 |
3.04e-74 |
|
PTS system, N-acetylglucosamine-specific IIBC component; This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273920 [Multi-domain] Cd Length: 475 Bit Score: 243.52 E-value: 3.04e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 8 FWQKFGKALLVVVAVMPAAGLMISIGKLIGmsagdvNAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDraggafaa 87
Cdd:TIGR01998 4 YFQKLGRALMLPIATLPVAALLLRIGNATH------GADLLVANFFIAAGGAIFDNLGLLFAIGVAIGMSKD-------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 88 llafvltnritgaifGVNAQMLAdskATVSSVIAGDLLVKDYFTSVLG-APALNMG------VFVGIITGFLGANLYNKY 160
Cdd:TIGR01998 70 ---------------NDGAAALA---GLVAYFVVTKVLSPPPLAAALGiKSEINMAfsawknVFVGILAGLIAGALYNRF 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 161 YNYNKlPQALAFFNGKRFVPFVVILWSTVTAIVLSLLWPFIQSGLNEFGRWIAASKDsapvVAPFVYGTLERLLLPFGLH 240
Cdd:TIGR01998 132 SEIKL-PEALSFFSGKRLVPIMAGFVGLVLAALLGYVWPTLYGGIVAFGESISGLGA----LGAGIYGFLNRLLIPTGLH 206
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 241 HMLTipmnytelggtytmltgSKVGQVVAGqdplwlawITDLNNLLANGDTKAYNDllnnvVPARFKAGQVIGSTAALMG 320
Cdd:TIGR01998 207 HALN-----------------SVFWFDVAG--------INDFGNFTGGGDLNRFKG-----IAGMFMAGFFPIMMFGLPA 256
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 321 IAFAMFRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLrVHAFGFIELIT 400
Cdd:TIGR01998 257 AALAMYHTARPERRKQVGGMLLSVAFASFLTGVTEPLEFSFMFLAPVLYALHALLTGLSLFIAAMLHW-TAGFSFSAGLI 335
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 401 RTPMMVNAGLTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAGNYIDNEDEASEGTENVQDGSLATKVIDLLGGK 480
Cdd:TIGR01998 336 DYVLSFNNPTANQPLMLLVQGLVFFALYYVVFRFAIRRFNLKTPGREDEDPEGATAAAVTSTGDSKMQLAKQYLAALGGH 415
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446628222 481 ENIADVDACMTRLRVTVKDLDVVaPEAQWKQNGALGLIVKDK-GVQAVYGPKADVLKSDIQ 540
Cdd:TIGR01998 416 DNLVSIDACITRLRLTLKDTSIV-DEPALKALGARGVVKLGKhNLQVILGPLAEIVAGEMK 475
|
|
| PtsG1 |
COG1263 |
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific ... |
6-544 |
8.40e-63 |
|
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism];
Pssm-ID: 440875 [Multi-domain] Cd Length: 463 Bit Score: 212.88 E-value: 8.40e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 6 FDFWQKFGKALLVVVAVMPAAGLMISIGKLIGMSA--GDVNAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAkdragg 83
Cdd:COG1263 9 FRFLQKIGGIFMPPIPVLPAAGLLLGLGALLTNPGllGEGSFLSGTYQILNAAGDAVFYFLPLLFAIGAAKGFG------ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 84 afaallafvlTNRITGAIFGVnaqmladskATVSSVIAGDLLVKDYFTSVLGAPAL---NMGVFVGIITGFLGANLYNKY 160
Cdd:COG1263 83 ----------GNPALAAVIGY---------LLVHPTLLNAYAVAGGYISFLGIPTLigyQGGVFPGILAGWLAAYLEKFL 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 161 YNYNklPQALAFFngkrFVPFVVILWST-VTAIVLSLLWPFIQSGLNEFGRWIAaskDSAPVVAPFVYGTLERLLLPFGL 239
Cdd:COG1263 144 KKKL--PDALGFF----FVPILTLLIMVpLALLVIGPIWPPIGNGIAAGLGWIY---GLAGAIGGFIYGFLYRLLVPTGL 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 240 HHMLTIPMNYtELGGTytmltgskvgqvvaGQDPLWLAWitdlnnllangdtkayndllnnvvparfkagqvIGSTAALM 319
Cdd:COG1263 215 HHGLNPIFWF-LLGGT--------------GDDGLFPIL---------------------------------AAAMFGQP 246
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 320 GIAFAMFRNVDKEKraKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINLRVHAFGFIELI 399
Cdd:COG1263 247 GAALAVYLKAKPNK--KVKGLAISAALTAFLTGITEPAEFGFNLVAPKLFIAHAIGGGLGGAIAGLLGVKAFSFGVGGLI 324
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 400 TrTPMMVNAGLTRdlINFVIVSLVFFGLNFTLFNFLIkkfnlptpGRAgnyiDNEDEASEGTENVQDGSLATKVIDLLGG 479
Cdd:COG1263 325 D-FPSILNPGATN--LLLYLIGLVIAFVYYFVFTFLI--------GRE----DEEEEEKLATKADAKKEEAEAAAAALGG 389
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446628222 480 KENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDMLG 544
Cdd:COG1263 390 GGGLLLLEADITVLLLTLVDVVIVVVKDVVKLAAAGAVVVGVGGVGAVGGVGGGGVVIVIVIIIL 454
|
|
| PRK10110 |
PRK10110 |
PTS maltose transporter subunit IICB; |
2-545 |
1.35e-61 |
|
PTS maltose transporter subunit IICB;
Pssm-ID: 182245 [Multi-domain] Cd Length: 530 Bit Score: 211.51 E-value: 1.35e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 2 KITSFDFWQKFGKALLVVVAVMPAAGLMISIGKliGMSAGDV---------NAVHTIARVMEDIGWAIITNLHILFAVAI 72
Cdd:PRK10110 8 KVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGS--SLSSHDVitlipflgnPVLQAIFTWMSKIGSFAFSFLPVMFCIAI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 73 GGSWAKDRAGGAFAallafvltnritGAIFGVNAQMLA-DSKATVSSVIAGD--LLVKDY-FTSVLGAPALNMGVFVGII 148
Cdd:PRK10110 86 PLGLARENKGVAAF------------AGFVGYAVMNLAvNFWLTNKGILPTTdaAVLKANnIQSILGIQSIDTGILGAVI 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 149 TGFLGANLYNKYYNYNKlPQALAFFNGKRFVPFVVILWSTVTAIVLSLLWPFIQSGLNEFGRWIAaskdSAPVVAPFVYG 228
Cdd:PRK10110 154 AGIIVWMLHERFHNIRL-PDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMIN----SAGDFGPMLFG 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 229 TLERLLLPFGLHHMLTIPMNYTELGGTYTMltgskVGQVVAGQDPLWLAwitDLNNLLANGDTKAYNDLLNNVVPARFKA 308
Cdd:PRK10110 229 TGERLLLPFGLHHILVALIRFTDAGGTQEV-----CGQTVSGALTIFQA---QLSCPTTHGFSESATRFLSQGKMPAFLG 300
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 309 GqvigstaaLMGIAFAMFRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLINL 388
Cdd:PRK10110 301 G--------LPGAALAMYHCARPENRHKIKGLLISGVIACVVGGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGV 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 389 RV-HAFGfiELITRTPMMVNAGLTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAGNYIDNEDEASEGTENvQDG 467
Cdd:PRK10110 373 TIgNTDG--NIIDFVVFGILHGLSTKWYMVPVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPG-KSG 449
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446628222 468 SLATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVaPEAQWKQNGALGLI-VKDKGVQAVYGPKADVLKSDIQDMLGA 545
Cdd:PRK10110 450 YNVPAILEALGGADNIVSLDNCITRLRLSVKDMSLV-DVQALKDNRAIGVVqLNQHNLQVVIGPQVQSVKDEMAGLMHT 527
|
|
| PRK10255 |
PRK10255 |
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional |
8-533 |
1.66e-56 |
|
PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Pssm-ID: 182338 [Multi-domain] Cd Length: 648 Bit Score: 200.10 E-value: 1.66e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 8 FWQKFGKALLVVVAVMPAAGLMISIGKligmsaGDVNAVHTIARVmediGWAIITNLHILFAVAIGGSWAKDRAGGAFaa 87
Cdd:PRK10255 6 FFQRLGRALQLPIAVLPVAALLLRFGQ------PDLLNVAFIAQA----GGAIFDNLALIFAIGVASSWSKDSAGAAA-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 88 llafvltnrITGAifgVNAQMLADSKATVSsviagdllvkdyftsvlgaPALNMGVFVGIITGFLGANLYNKYYNYNKlP 167
Cdd:PRK10255 74 ---------LAGA---VGYFVLTKAMVTIN-------------------PEINMGVLAGIITGLVGGAAYNRWSDIKL-P 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 168 QALAFFNGKRFVPFVVILWSTVTAIVLSLLWPFIQSGLNEFGRWIAaskdSAPVVAPFVYGTLERLLLPFGLHHMLTIPM 247
Cdd:PRK10255 122 DFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIHAGGEWIV----SAGALGSGIFGFINRLLIPTGLHQVLNTIA 197
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 248 NYTElgGTYTmltgSKVGQVVAGqdplwlawitDLNNLLAnGDTKAyndllnnvvpARFKAGQVIGSTAALMGIAFAMFR 327
Cdd:PRK10255 198 WFQI--GEFT----NAAGTVFHG----------DINRFYA-GDGTA----------GMFMSGFFPIMMFGLPGAALAMYF 250
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 328 NVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTGLAFALADLinLRVHA-FGFIELITRTPMMV 406
Cdd:PRK10255 251 AAPKERRPMVGGMLLSVAVTAFLTGVTEPLEFLFMFLAPLLYLLHALLTGISLFVATL--LGIHAgFSFSAGAIDYALMY 328
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 407 N-AGLTRDLINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAgnyiDNEDE--ASEGTENVQDG--SLATKVIDLLGGKE 481
Cdd:PRK10255 329 NlPAASQNVWMLLVMGVVFFAIYFVLFSAVIRMFNLKTPGRE----DKEDEivTEEANSNTEEGltQLATNYIAAVGGTD 404
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 446628222 482 NIADVDACMTRLRVTVKDLDVVApEAQWKQNGALGLIVKDK-GVQAVYGPKAD 533
Cdd:PRK10255 405 NLKAIDACITRLRLTVADSARVN-DAMCKRLGASGVVKLNKqTIQVIVGAKAE 456
|
|
| PTS_EIIC |
pfam02378 |
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase ... |
13-377 |
5.66e-31 |
|
Phosphotransferase system, EIIC; The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.
Pssm-ID: 367061 Cd Length: 315 Bit Score: 122.46 E-value: 5.66e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 13 GKALLVVVAVMPAAGLMISIG----KLIGMSAGDVNAVHTIARVMEDIGWAIITNLHILFAVAIGGSWAKDraggafaal 88
Cdd:pfam02378 1 GDGFMPPIPLLIAGGILLGLGnlpnDTTGLPAGGFTGDSPLAEILKQAGSAAFGILPILFAIGIAYGLAGG--------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 89 lafvltNRITGAIFGVNaqMLADSKATVSSVIAGDLLVKdYFTSVLGAPALNMGVFVGIITGFLGANLYNKYYNYNKL-- 166
Cdd:pfam02378 72 ------DGVAGAAGLIG--LLSFNLAAAISVALTAAGLS-GGGNILGIGLGATGVFGAIIPGLLAAYLYNRFEKNITIkl 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 167 PQALAFFNGKRFVPFVVILWS-TVTAIVLSLLWPFIQSGLNEFGRWIaasKDSAPVVAPFVYGTLERLLLPFGLHHMLTI 245
Cdd:pfam02378 143 PDSLPFFVGKRFVPIITGFVTlLVIGPVLGLIWPAIQGGLNALGLLL---IIAGGILGGLIFGFLERLLWPFGLHGAFIA 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 246 PmnytelggtytmltgskvgqvvagqdplwlAWITDLNNLLANGDTKAYNDLLNNVVPARFKAgqvigsTAALMGIAFAM 325
Cdd:pfam02378 220 I------------------------------FWFLPIGGSNPIANQQAYGAGAAHILTGGFDV------MFGGPGATLAL 263
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 446628222 326 FRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPVLYVVYAITTG 377
Cdd:pfam02378 264 YAAAFLFKKSKVKKLLGSAALTPFLFGITEPLEFGFPFVLNPPFFIPAILAG 315
|
|
| pts-Glc |
TIGR00852 |
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside ... |
57-383 |
1.01e-26 |
|
PTS system, maltose and glucose-specific subfamily, IIC component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273299 Cd Length: 289 Bit Score: 109.71 E-value: 1.01e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 57 GWAIITNLHILFAVAIGGSWAKdraggafaallafvltNRITGAIFG---VNAQMLA--DSKATVSSVIAGDLLVKDYFT 131
Cdd:TIGR00852 1 GSAAFFFLPLLFAIGAAKGFGG----------------NPYLGAALAgilVHPVLNNamGVGAQAVGNFFGFEIAKVGYT 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 132 SVLGaPALNMGVFVGIITGFLGANLynkyynynklPQALAFFNGKRFVPFVVILWSTVTAIVLSLLWPFIqsGLNEFGRW 211
Cdd:TIGR00852 65 GVVG-PIIVGAIALALHERFLDKKL----------PDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPV--GISALLHW 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 212 IAaskDSAPVVAPFVYGTLERLLLPFGLHHMLTIPMNYTELGGTytmltgskvgqvVAGQDPLWLAWITDLNNLLANGdt 291
Cdd:TIGR00852 132 LY---SAGGALGGAIFGFLYRLLVPTGLHHIFYAIFIQLIAGGT------------VIGGGQVIPGDALANMAQGGAA-- 194
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 292 kayndlLNNVVPARFKAGQVIGSTAALM----GIAFAMFRNVDKEKRAKYKPMFLSAALAVFLTGVTEPIEFMFMFIAPV 367
Cdd:TIGR00852 195 ------LAVFFTAGDAKFKSIGLPAAFSaglgITEPAMYGVALRERRPFVAGLIGSALLTAFLTGITEPLEFLFLFGAPG 268
|
330
....*....|....*.
gi 446628222 368 LYVVYAITTGLAFALA 383
Cdd:TIGR00852 269 LYSIHAVLAGSIFTVA 284
|
|
| PtsG2 |
COG1264 |
Phosphotransferase system IIB components [Carbohydrate transport and metabolism]; |
469-543 |
4.26e-26 |
|
Phosphotransferase system IIB components [Carbohydrate transport and metabolism];
Pssm-ID: 440876 [Multi-domain] Cd Length: 76 Bit Score: 101.35 E-value: 4.26e-26
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446628222 469 LATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVaPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDML 543
Cdd:COG1264 3 LAKDILEALGGKENIVSVDHCATRLRVTVKDPSKV-DEAALKKLGVKGVVKNGGQVQVIIGPGVDKVADEIEKLL 76
|
|
| PTS_IIB_glc |
cd00212 |
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: ... |
469-543 |
1.13e-21 |
|
PTS_IIB, PTS system, glucose/sucrose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation
Pssm-ID: 238130 [Multi-domain] Cd Length: 78 Bit Score: 88.74 E-value: 1.13e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446628222 469 LATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGP-KADVLKSDIQDML 543
Cdd:cd00212 3 LAKDILEALGGKENIVSLDHCATRLRLTVKDESKVDEAALKKLGGVKGVVKNGGQYQVIIGPgVADVYKEAIKLLG 78
|
|
| EIIB_glc |
TIGR00826 |
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) ... |
437-529 |
2.26e-15 |
|
PTS system, glucose-like IIB component; The PTS Glucose-Glucoside (Glc) Family (TC 4.A.1) Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli . Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIB domain of the Glc family PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]
Pssm-ID: 273288 [Multi-domain] Cd Length: 88 Bit Score: 71.24 E-value: 2.26e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 437 KKFNLPTPGRAgnyiDNEDEASEGTENVQDGSLATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVApEAQWKQNGALG 516
Cdd:TIGR00826 1 TRLRLKTPGRE----KADEEAIAAGEGVKGVFTAAGQIQALGGTGNVNKVDACITRLRVGVADVSKVD-DAVLKKLGAHG 75
|
90
....*....|...
gi 446628222 517 LIVKDKGVQAVYG 529
Cdd:TIGR00826 76 VNPLQRAVQVISG 88
|
|
| PTS_EIIB |
pfam00367 |
phosphotransferase system, EIIB; |
472-499 |
5.48e-13 |
|
phosphotransferase system, EIIB;
Pssm-ID: 459785 [Multi-domain] Cd Length: 32 Bit Score: 62.77 E-value: 5.48e-13
10 20
....*....|....*....|....*...
gi 446628222 472 KVIDLLGGKENIADVDACMTRLRVTVKD 499
Cdd:pfam00367 2 EILEALGGKENIKSVDHCATRLRLTVKD 29
|
|
| PRK09702 |
PRK09702 |
PTS sugar transporter subunit IIB; |
414-545 |
2.54e-10 |
|
PTS sugar transporter subunit IIB;
Pssm-ID: 77355 [Multi-domain] Cd Length: 161 Bit Score: 59.34 E-value: 2.54e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 414 LINFVIVSLVFFGLNFTLFNFLIKKFNLPTPGRAGN----YIDNEDEASEG----TENVQDGSLATKVIDLLGGKENIAD 485
Cdd:PRK09702 9 MLTQIAIGLCFTLLYFVVFRTLILQFNMCTPGREDAevklYSKAEYKASRGqttaAEPKKELDQAAGILQALGGVGNISS 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446628222 486 VDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDMLGA 545
Cdd:PRK09702 89 INNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVIIGLHVSQLREQLDSLINS 148
|
|
| murP |
PRK09586 |
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed |
468-530 |
7.42e-07 |
|
PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Pssm-ID: 181971 [Multi-domain] Cd Length: 476 Bit Score: 51.60 E-value: 7.42e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446628222 468 SLATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGP 530
Cdd:PRK09586 7 ELLNTILTRVGGPGNIASCGNCMTRLRLTLHDSSLVDPAAIKTIEGVKGVILSDDQVQVVLGP 69
|
|
| PRK09796 |
PRK09796 |
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional |
469-529 |
5.44e-05 |
|
PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Pssm-ID: 182081 Cd Length: 472 Bit Score: 45.94 E-value: 5.44e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446628222 469 LATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYG 529
Cdd:PRK09796 8 LARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDSPTLKTIPGVLGVVRSDNQCQVIIG 68
|
|
| PRK14905 |
PRK14905 |
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; ... |
469-531 |
8.70e-05 |
|
triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Pssm-ID: 184898 [Multi-domain] Cd Length: 355 Bit Score: 45.02 E-value: 8.70e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446628222 469 LATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPK 531
Cdd:PRK14905 277 IAIQLIDHLGGKDNISALTHCASRIRVMLRNDGHIDKSAIEKIDCVKGLFSIANQYQIILGAG 339
|
|
| PTS-II-ABC-beta |
TIGR01995 |
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS ... |
469-545 |
1.15e-04 |
|
PTS system, beta-glucoside-specific IIABC component; This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Pssm-ID: 273919 [Multi-domain] Cd Length: 610 Bit Score: 45.03 E-value: 1.15e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446628222 469 LATKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEAQWKQNGALGLIVKDKGVQAVYGPKADVLKSDIQDMLGA 545
Cdd:TIGR01995 4 LAKAIIENVGGKENIESVTHCATRLRFTLKDDAKADTEKLKKISGVITVVKSGGQYQVVIGNDVNDVYQALMDVLGL 80
|
|
| PRK11007 |
PRK11007 |
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional |
471-507 |
1.89e-03 |
|
PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional
Pssm-ID: 182896 Cd Length: 473 Bit Score: 40.82 E-value: 1.89e-03
10 20 30
....*....|....*....|....*....|....*..
gi 446628222 471 TKVIDLLGGKENIADVDACMTRLRVTVKDLDVVAPEA 507
Cdd:PRK11007 11 DRLIELVGGRENIATVSHCITRLRFVLNDPANADPKE 47
|
|
| |
