|
Name |
Accession |
Description |
Interval |
E-value |
| ARO8 |
COG1167 |
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain ... |
1-474 |
6.76e-153 |
|
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain is part of the Pathway/BioSystem: Lysine biosynthesis
Pssm-ID: 440781 [Multi-domain] Cd Length: 471 Bit Score: 443.12 E-value: 6.76e-153
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 1 MKIVLRKETNIPYYKQIYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYiykrV 80
Cdd:COG1167 1 MLIRLDRDSSGPLYLQLADALREAILSGRLPPGDRLPSSRELAAQLGVSRSTVVRAYEELEAEGLIESRPGSGTF----V 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 81 KKDFKPIPYKWQQMKTINVMRSQYAMNKHRKYYNFSQAILYPRLLPNPFLADEMHKLLDKNPMLLATYGPVQGDYELRVE 160
Cdd:COG1167 77 AARLPAPAPAPRAAAAVAAPALRRLLEAAPGVIDLGSGAPDPDLFPLAALRRALRRALRRLPPALLGYGDPQGLPELREA 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 161 IANYLNEHQkLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQIIPVSLDNHGVRSDLIDD 240
Cdd:COG1167 157 IARYLARRG-VPASPDQILITSGAQQALDLALRALLRPGDTVAVESPTYPGALAALRAAGLRLVPVPVDEDGLDLDALEA 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 241 ICQSKNPVLLYTNPTFQNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAiIPPPIKSFDKDGHVIYIKGFSK 320
Cdd:COG1167 236 ALRRHRPRAVYVTPSHQNPTGATMSLERRRALLELARRHGVPIIEDDYDSELRYDGR-PPPPLAALDAPGRVIYIGSFSK 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 321 TLAPGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRAERMKNHLEKLRTALQMRRDLTIDILSPL--KELH 398
Cdd:COG1167 315 TLAPGLRLGYLVAPGRLIERLARLKRATDLGTSPLTQLALAEFLESGHYDRHLRRLRREYRARRDLLLAALARHlpDGLR 394
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446629445 399 FEIPNGGFNLWVTLPDSIDPFTLLQKANEVDVSFLPGTACLLNyETNDNQLRISYSMLNEKDMEIGLEKLHDTIRN 474
Cdd:COG1167 395 VTGPPGGLHLWLELPEGVDAEALAAAALARGILVAPGSAFSAD-GPPRNGLRLGFGAPSEEELEEALRRLAELLRE 469
|
|
| AAT_like |
cd00609 |
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
113-470 |
1.12e-79 |
|
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.
Pssm-ID: 99734 [Multi-domain] Cd Length: 350 Bit Score: 251.49 E-value: 1.12e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 113 YNFSQAIlyPRLLPNPFLADEMHKLLDKNPMLLatYGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIA 192
Cdd:cd00609 1 IDLSIGE--PDFPPPPEVLEALAAAALRAGLLG--YYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 193 QTLLKPGDIVLVESPCYSAALDIFINKGVQIIPVSLDNHGVRSDLIDDI--CQSKNPVLLYTNPtFQNPTGTVMSKERRM 270
Cdd:cd00609 77 RALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDLELLeaAKTPKTKLLYLNN-PNNPTGAVLSEEELE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 271 ELIELSELYQFFIIEDDSFGEIYFEDAiIPPPIKSFDKDGHVIYIKGFSKTLA-PGLRIAALIADGP-IFEWLYAVKGSM 348
Cdd:cd00609 156 ELAELAKKHGILIISDEAYAELVYDGE-PPPALALLDAYERVIVLRSFSKTFGlPGLRIGYLIAPPEeLLERLKKLLPYT 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 349 DIGSPLLTQKALLPFLRAERmkNHLEKLRTALQMRRDLTIDILSPLKELHFEIPNGGFNLWVTLPDSIDPFTLLQKANEV 428
Cdd:cd00609 235 TSGPSTLSQAAAAAALDDGE--EHLEELRERYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEGDDEEFLERLLLEA 312
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 446629445 429 DVSFLPGTACllnYETNDNQLRISYSMLNEkDMEIGLEKLHD 470
Cdd:cd00609 313 GVVVRPGSAF---GEGGEGFVRLSFATPEE-ELEEALERLAE 350
|
|
| AspB |
COG0436 |
Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; ... |
148-470 |
3.75e-52 |
|
Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; Aspartate/methionine/tyrosine aminotransferase is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis
Pssm-ID: 440205 [Multi-domain] Cd Length: 387 Bit Score: 180.71 E-value: 3.75e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQIIPVS 227
Cdd:COG0436 63 YTPSAGIPELREAIAAYYKRRYGVDLDPDEILVTNGAKEALALALLALLNPGDEVLVPDPGYPSYRAAVRLAGGKPVPVP 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 228 LD-NHGVRSDLiDDICQSKNP---VLLYTNPtfQNPTGTVMSKErrmELIELSEL---YQFFIIEDDSFGEIYFEDAiIP 300
Cdd:COG0436 143 LDeENGFLPDP-EALEAAITPrtkAIVLNSP--NNPTGAVYSRE---ELEALAELareHDLLVISDEIYEELVYDGA-EH 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 301 PPIKSFD--KDgHVIYIKGFSKTLA-PGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRAERmkNHLEKLR 377
Cdd:COG0436 216 VSILSLPglKD-RTIVINSFSKSYAmTGWRIGYAVGPPELIAALLKLQSNLTSCAPTPAQYAAAAALEGPQ--DYVEEMR 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 378 TALQMRRDLTIDIlspLKELHFEI--PNGGFNLWVTLPDSIDP---FT--LLQKANevdVSFLPGTACllnYETNDNQLR 450
Cdd:COG0436 293 AEYRRRRDLLVEG---LNEIGLSVvkPEGAFYLFADVPELGLDseeFAerLLEEAG---VAVVPGSAF---GPAGEGYVR 363
|
330 340
....*....|....*....|
gi 446629445 451 ISYSmLNEKDMEIGLEKLHD 470
Cdd:COG0436 364 ISYA-TSEERLEEALERLAR 382
|
|
| Aminotran_1_2 |
pfam00155 |
Aminotransferase class I and II; |
122-468 |
3.78e-35 |
|
Aminotransferase class I and II;
Pssm-ID: 395103 [Multi-domain] Cd Length: 351 Bit Score: 133.97 E-value: 3.78e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 122 PRLLPNPFLADEMHKLLDKNPmlLATYGPVQGDYELRVEIANYLNEHQKLVTDP-SQLLITSGAQQGIDLIAQTLLKPGD 200
Cdd:pfam00155 11 YLGDTLPAVAKAEKDALAGGT--RNLYGPTDGHPELREALAKFLGRSPVLKLDReAAVVFGSGAGANIEALIFLLANPGD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 201 IVLVESPCYSAALDIFINKGVQIIPVSL---DNHGVRSDLIDDICQSKNPVLLYTNPtfQNPTGTVMSKERRMELIELSE 277
Cdd:pfam00155 89 AILVPAPTYASYIRIARLAGGEVVRYPLydsNDFHLDFDALEAALKEKPKVVLHTSP--HNPTGTVATLEELEKLLDLAK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 278 LYQFFIIEDDSFGEIYFEDAIIPPPIKSFDKDGHVIYIKGFSKTLA-PGLRIAALIADGPIFEWLYAVKGSMDigSPLLT 356
Cdd:pfam00155 167 EHNILLLVDEAYAGFVFGSPDAVATRALLAEGPNLLVVGSFSKAFGlAGWRVGYILGNAAVISQLRKLARPFY--SSTHL 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 357 QKALLPFLRAERMKN-HLEKLRTALQMRRDLTIDILSPLkELHFEIPNGGFNLWVTLPDSIDPFTLLQKANEVDVSFLPG 435
Cdd:pfam00155 245 QAAAAAALSDPLLVAsELEEMRQRIKERRDYLRDGLQAA-GLSVLPSQAGFFLLTGLDPETAKELAQVLLEEVGVYVTPG 323
|
330 340 350
....*....|....*....|....*....|...
gi 446629445 436 TACLLnyetnDNQLRISYSMLNEKDMEIGLEKL 468
Cdd:pfam00155 324 SSPGV-----PGWLRITVAGGTEEELEELLEAI 351
|
|
| PRK05764 |
PRK05764 |
aspartate aminotransferase; Provisional |
148-474 |
2.25e-27 |
|
aspartate aminotransferase; Provisional
Pssm-ID: 235596 Cd Length: 393 Bit Score: 113.30 E-value: 2.25e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESP---CYSAALDIFINKGVqII 224
Cdd:PRK05764 64 YTPAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPywvSYPEMVKLAGGVPV-FV 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 225 PVSLDNH-GVRSDLIDDICQSKNPVLLYTNPTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAIIPPPI 303
Cdd:PRK05764 143 PTGEENGfKLTVEQLEAAITPKTKALILNSPS--NPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIA 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 304 KSFD--KDgHVIYIKGFSKTLA-PGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRAERmkNHLEKLRTAL 380
Cdd:PRK05764 221 SLSPelRD-RTITVNGFSKAYAmTGWRLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNGPQ--DEVEEMRQAF 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 381 QMRRDLTIDILSPLKELHFEIPNGGFNLWV----TLPDSIDPFT-----LLQKANevdVSFLPGTAcllnYETNDNqLRI 451
Cdd:PRK05764 298 EERRDLMVDGLNEIPGLECPKPEGAFYVFPnvskLLGKSITDSLefaeaLLEEAG---VAVVPGIA----FGAPGY-VRL 369
|
330 340
....*....|....*....|...
gi 446629445 452 SYSmLNEKDMEIGLEKLHDTIRN 474
Cdd:PRK05764 370 SYA-TSLEDLEEGLERIERFLES 391
|
|
| PRK08363 |
PRK08363 |
alanine aminotransferase; Validated |
148-406 |
2.05e-23 |
|
alanine aminotransferase; Validated
Pssm-ID: 181402 Cd Length: 398 Bit Score: 101.81 E-value: 2.05e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYS--AALDIFINkGVQIIP 225
Cdd:PRK08363 66 YGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPpyTGLVKFYG-GVPVEY 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 226 VSLDNHGVRSDlIDDI---CQSKNPVLLYTNPtfQNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAIIPPp 302
Cdd:PRK08363 145 RTIEEEGWQPD-IDDIrkkITEKTKAIAVINP--NNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSP- 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 303 iKSFDKDGHVIYIKGFSKT-LAPGLRIAALIADGPiFEWLYAVKGSMD------IGSPLLTQKALLPFLRAErmKNHLEK 375
Cdd:PRK08363 221 -GSLTKDVPVIVMNGLSKVyFATGWRLGYIYFVDP-EGKLAEVREAIDklarirLCPNTPAQFAAIAGLTGP--MDYLEE 296
|
250 260 270
....*....|....*....|....*....|.
gi 446629445 376 LRTALQMRRDLTIDILSPLKELHFEIPNGGF 406
Cdd:PRK08363 297 YMKKLKERRDYIYKRLNEIPGISTTKPQGAF 327
|
|
| PRK15481 |
PRK15481 |
transcriptional regulatory protein PtsJ; Provisional |
16-421 |
3.95e-23 |
|
transcriptional regulatory protein PtsJ; Provisional
Pssm-ID: 185378 [Multi-domain] Cd Length: 431 Bit Score: 101.28 E-value: 3.95e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 16 QIYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGyIRIEQGKGAYIYKRVkkdfkPIPYKWQQMK 95
Cdd:PRK15481 9 EIFDSIRQLIQAGRLRPGDSLPPVRELASELGVNRNTVAAAYKRLVTAG-LAQSQGRNGTVIRGS-----PSPVALEGGD 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 96 TINVMRSQYAMNKHrkyynfsqailyPRLLPNPflaDEMHKLLDKNPMLlatYGPVQGDYELRVEIANYLnehQKLVTDP 175
Cdd:PRK15481 83 PGTPLHDLAGGNPD------------PQRLPDL---SRYFARLSRTPRL---YGDAPVSPELHAWAARWL---RDDCPVA 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 176 SQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQIIPVSLDNHGVRSD-LIDDICQSKNPVLLytNP 254
Cdd:PRK15481 142 FEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQPEkLERALAQGARAVIL--TP 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 255 TFQNPTGTVMSKERRMELIELSELY-QFFIIEDDSFGEIYFED--AIIPPpiksfdKDGHVIYIKGFSKTLAPGLRIAAL 331
Cdd:PRK15481 220 RAHNPTGCSLSARRAAALRNLLARYpQVLVIIDDHFALLSSSPyhSVIPQ------TTQRWALIRSVSKALGPDLRLAFV 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 332 IAD-----------GPIFEWLyavkgsmdigSPLLtQKALLPFLRAERMKNHLEKLRTALQMRRDLTIDILSPlKELHFE 400
Cdd:PRK15481 294 ASDsatsarlrlrlNSGTQWV----------SHLL-QDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQ-YGIAIP 361
|
410 420
....*....|....*....|.
gi 446629445 401 IPNGGFNLWVTLPDSIDPFTL 421
Cdd:PRK15481 362 SPGDGLNLWLPLDTDSQATAL 382
|
|
| PRK08361 |
PRK08361 |
aspartate aminotransferase; Provisional |
148-462 |
1.53e-21 |
|
aspartate aminotransferase; Provisional
Pssm-ID: 236248 [Multi-domain] Cd Length: 391 Bit Score: 96.10 E-value: 1.53e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESP---CYSAALDIFINKGVQiI 224
Cdd:PRK08361 66 YTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPafvCYVEDAKIAEAKPIR-I 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 225 PVSLDNHgVRSD---LIDDICQ-SKNPVLLYTNptfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAIIP 300
Cdd:PRK08361 145 PLREENE-FQPDpdeLLELITKrTRMIVINYPN----NPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHY 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 301 PPIKsFDKDgHVIYIKGFSKTLA-PGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRAERMKNHLEKLRTA 379
Cdd:PRK08361 220 PMIK-YAPD-NTILANSFSKTFAmTGWRLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKE 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 380 LQMRRDLTIDILSPLKELHFEIPNGGFNLWVTLPD---SIDPFT--LLQKANevdVSFLPGTACllnYETNDNQLRISYS 454
Cdd:PRK08361 298 YNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDEtgmSSEDFAewLLEKAR---VVVIPGTAF---GKAGEGYIRISYA 371
|
....*...
gi 446629445 455 MLNEKDME 462
Cdd:PRK08361 372 TSKEKLIE 379
|
|
| PRK07682 |
PRK07682 |
aminotransferase; |
153-406 |
2.05e-21 |
|
aminotransferase;
Pssm-ID: 181082 [Multi-domain] Cd Length: 378 Bit Score: 95.57 E-value: 2.05e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 153 GDYELRVEIANYLNEHQKLVTDP-SQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQIIPV--SLD 229
Cdd:PRK07682 58 GLLELRQEIAKYLKKRFAVSYDPnDEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYAPLVTLAGGVPVPVatTLE 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 230 NH-GVRSDLIDDICQSKNPVLLYTNPTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAIIP-PPIKSFD 307
Cdd:PRK07682 138 NEfKVQPAQIEAAITAKTKAILLCSPN--NPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSfASIKGMR 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 308 KdgHVIYIKGFSKTLA-PGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRAErmKNHLEKLRTALQMRRDL 386
Cdd:PRK07682 216 E--RTILISGFSKGFAmTGWRLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAG--NDDVIRMRDSYRKRRNF 291
|
250 260
....*....|....*....|
gi 446629445 387 TIDILSPLKeLHFEIPNGGF 406
Cdd:PRK07682 292 FVTSFNEIG-LTCHVPGGAF 310
|
|
| YhcF |
COG1725 |
DNA-binding transcriptional regulator YhcF, GntR family [Transcription]; |
3-76 |
2.40e-21 |
|
DNA-binding transcriptional regulator YhcF, GntR family [Transcription];
Pssm-ID: 441331 [Multi-domain] Cd Length: 114 Bit Score: 89.08 E-value: 2.40e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446629445 3 IVLRKETNIPYYKQIYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYI 76
Cdd:COG1725 1 IRIDFDSGVPIYEQIADQIKEAIASGELKPGDRLPSVRELAAELGVNPNTVAKAYRELEDEGLIETRRGKGTFV 74
|
|
| PRK07683 |
PRK07683 |
aminotransferase A; Validated |
147-468 |
2.79e-20 |
|
aminotransferase A; Validated
Pssm-ID: 236075 Cd Length: 387 Bit Score: 92.48 E-value: 2.79e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 147 TYGPVQGDYELRVEIANYLNEHQKLVTDP-SQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQIIP 225
Cdd:PRK07683 60 SYTHNAGLLELRKAACNFVKDKYDLHYSPeSEIIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVF 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 226 VSLDNHGVR--SDLIDDICQSKNPVLLYTNPTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAIIppPI 303
Cdd:PRK07683 140 IDTRSTGFRltAEALENAITEKTRCVVLPYPS--NPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHT--SI 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 304 KSFD--KDgHVIYIKGFSKTLA-PGLRIAALIADGPIFEWL-----YAVKGSMDIgspllTQKALLPFLRAErmKNHLEK 375
Cdd:PRK07683 216 AHFPemRE-KTIVINGLSKSHSmTGWRIGFLFAPSYLAKHIlkvhqYNVTCASSI-----SQYAALEALTAG--KDDAKM 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 376 LRTALQMRRDLTIDILSPLKeLHFEIPNGGFNLWvtlPdSIDPFTL------LQKANEVDVSFLPGTACllnYETNDNQL 449
Cdd:PRK07683 288 MRHQYKKRRDYVYNRLISMG-LDVEKPTGAFYLF---P-SIGHFTMssfdfaLDLVEEAGLAVVPGSAF---SEYGEGYV 359
|
330
....*....|....*....
gi 446629445 450 RISYSMlNEKDMEIGLEKL 468
Cdd:PRK07683 360 RLSYAY-SIETLKEGLDRL 377
|
|
| PRK06108 |
PRK06108 |
pyridoxal phosphate-dependent aminotransferase; |
156-437 |
3.56e-20 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180404 Cd Length: 382 Bit Score: 91.93 E-value: 3.56e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 156 ELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCY---SAALDIFinkGVQIIPVSLD--N 230
Cdd:PRK06108 65 ELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWpnlVAAPKIL---GARVVCVPLDfgG 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 231 HGVRSDLiDDICQSKNP---VLLYTNPTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDaiiPPPIKSF- 306
Cdd:PRK06108 142 GGWTLDL-DRLLAAITPrtrALFINSPN--NPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAP---GGRAPSFl 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 307 ---DKDGHVIYIKGFSKTLA-PGLRIAALIAD---GPIFEWLYAVKGSmdiGSPLLTQKALL-------PFLRAErmknh 372
Cdd:PRK06108 216 diaEPDDRIIFVNSFSKNWAmTGWRLGWLVAPpalGQVLEKLIEYNTS---CVAQFVQRAAVaaldegeDFVAEL----- 287
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446629445 373 LEKLRTAlqmrRDLTIDILSPLKELHFEIPNGGFNLWVTLPDSIDPFTL-LQKANEVDVSFLPGTA 437
Cdd:PRK06108 288 VARLRRS----RDHLVDALRALPGVEVAKPDGAMYAFFRIPGVTDSLALaKRLVDEAGLGLAPGTA 349
|
|
| tyr_nico_aTase |
TIGR01265 |
tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal ... |
120-468 |
4.13e-20 |
|
tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Pssm-ID: 188123 Cd Length: 403 Bit Score: 92.02 E-value: 4.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 120 LYPRLLPNPFLADEMHKLLDKNpmLLATYGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPG 199
Cdd:TIGR01265 43 VFGNLRTDPEAEEAVKDALRSG--KFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEALANPG 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 200 DIVLVESPCYS--AALDIFINKGVQ---IIP---VSLDNHGVRSdLIDDicqsKNPVLLYTNPTfqNPTGTVMSKERRME 271
Cdd:TIGR01265 121 ANILVPRPGFPlyDTRAAFSGLEVRlydLLPekdWEIDLDGLES-LADE----KTVAIVVINPS--NPCGSVFSRDHLQK 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 272 LIELSELYQFFIIEDDSFGEIYFEDAIIpPPIKSFDKDGHVIYIKGFSKT-LAPGLRIAALIADGP--IFE--WLYAVKG 346
Cdd:TIGR01265 194 IAEVAEKLGIPIIADEIYGHMVFGDAPF-IPMASFASIVPVLSLGGISKRwVVPGWRLGWIIIHDPhgIFRdtVLQGLKN 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 347 SMDI--GSPLLTQKALLPFLRaERMKNHLEKLRTALQMRRDLTIDILSPLKELHFEIPNGGFNLWVTL-----PDSIDPF 419
Cdd:TIGR01265 273 LLQRilGPATIVQGALPDILE-NTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKPEGAMYLMVKLelelfPEIKDDV 351
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 446629445 420 TLLQK-ANEVDVSFLPGTAclLNYEtndNQLRISYSMlNEKDMEIGLEKL 468
Cdd:TIGR01265 352 DFCEKlAREESVICLPGSA--FGLP---NWVRITITV-PESMLEEACSRI 395
|
|
| PRK07568 |
PRK07568 |
pyridoxal phosphate-dependent aminotransferase; |
148-467 |
1.33e-19 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 181036 Cd Length: 397 Bit Score: 90.30 E-value: 1.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLnEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQIIPV- 226
Cdd:PRK07568 62 YSHSQGIPELREAFAKYY-KKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFATSAGVKIVPVt 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 227 -SLDNhGVRSDLIDDICQSKNP---VLLYTNPTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAIIPPP 302
Cdd:PRK07568 141 tKIEE-GFHLPSKEEIEKLITPktkAILISNPG--NPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSA 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 303 IKSFDKDGHVIYIKGFSKTL-APGLRIAALIADGPIFewlyaVKGSMDIGS-----PLLTQKALLPFLRAerMKNHLEKL 376
Cdd:PRK07568 218 LSLEGLEDRVIIIDSVSKRYsACGARIGCLISKNKEL-----IAAAMKLCQarlspPTLEQIGAAALLDT--PESYFDEV 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 377 RTALQMRRDLTIDILSPLKELHFEIPNGGFNLWVTLP-DSIDPFT--LLQKANeVD---VSFLPGTACllnYETND---N 447
Cdd:PRK07568 291 REEYKKRRDILYEELNKIPGVVCEKPKGAFYIIAKLPvDDAEDFAkwLLTDFN-YNgetVMVAPASGF---YATPGlgkN 366
|
330 340
....*....|....*....|....*..
gi 446629445 448 QLRISYsMLNEKD----MEI---GLEK 467
Cdd:PRK07568 367 EIRIAY-VLNEEDlkraMEIlkeALEK 392
|
|
| PRK06348 |
PRK06348 |
pyridoxal phosphate-dependent aminotransferase; |
153-468 |
1.45e-19 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180537 Cd Length: 384 Bit Score: 90.16 E-value: 1.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 153 GDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALD-IFINKGVQIIPVSLDNH 231
Cdd:PRK06348 67 GDVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDqIEMVGGKPIILETYEED 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 232 G--VRSDLIDDICQSKNPVLLYTNPtfQNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAIIppPIKSFDK- 308
Cdd:PRK06348 147 GfqINVKKLEALITSKTKAIILNSP--NNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFV--PMATLAGm 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 309 DGHVIYIKGFSKTLA-PGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLR---------AERMKNHLEKLrt 378
Cdd:PRK06348 223 PERTITFGSFSKDFAmTGWRIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKhrdtivpliKEEFQKRLEYA-- 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 379 alqMRRDLTIDILSPLKelhfeiPNGGFNLWVTLPD---SIDPFT--LLqkaNEVDVSFLPGTACllnYETNDNQLRISy 453
Cdd:PRK06348 301 ---YKRIESIPNLSLHP------PKGSIYAFINIKKtglSSVEFCekLL---KEAHVLVIPGKAF---GESGEGYIRLA- 364
|
330
....*....|....*
gi 446629445 454 smlnekdMEIGLEKL 468
Cdd:PRK06348 365 -------CTVGIEVL 372
|
|
| PRK07309 |
PRK07309 |
pyridoxal phosphate-dependent aminotransferase; |
148-437 |
2.92e-19 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235985 Cd Length: 391 Bit Score: 89.40 E-value: 2.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDP-SQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQI--I 224
Cdd:PRK07309 63 YTGMAGLLELRQAAADFVKEKYNLDYAPeNEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIveI 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 225 PVSLDNHGVRSDLIDDIC-----QSKNPVLLYtnPTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEI-YFEDAI 298
Cdd:PRK07309 143 DTTENDFVLTPEMLEKAIleqgdKLKAVILNY--PA--NPTGVTYSREQIKALADVLKKYDIFVISDEVYSELtYTGEPH 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 299 IppPIKSFDKDgHVIYIKGFSKTLA-PGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRAErmKNHLEKLR 377
Cdd:PRK07309 219 V--SIAEYLPD-QTILINGLSKSHAmTGWRIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNG--KDDALPMK 293
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446629445 378 TALQMRRDLTIDILSplkELHFEI--PNGGFNLWVTLPDSI--DPFTLLQK-ANEVDVSFLPGTA 437
Cdd:PRK07309 294 KEYIKRRDYIIEKMT---DLGFKIikPDGAFYIFAKIPAGYnqDSFKFLQDfARKKAVAFIPGAA 355
|
|
| PRK07550 |
PRK07550 |
aminotransferase; |
114-436 |
3.81e-19 |
|
aminotransferase;
Pssm-ID: 181026 [Multi-domain] Cd Length: 386 Bit Score: 88.86 E-value: 3.81e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 114 NFSQAI-LYPrllPNPFLADEMHKLLDKNPMllATYGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIA 192
Cdd:PRK07550 33 DLSQAVpGYP---PPPELLRALAEAAADPAA--HLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAM 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 193 QTLLKPGDIVLVESPCY---SAALDIFinkGVQIIPVSLD-NHGVRSDlIDDICQSKNP----VLLYTnPTfqNPTGTVM 264
Cdd:PRK07550 108 VTLAGAGDEVILPLPWYfnhKMWLDML---GIRPVYLPCDeGPGLLPD-PAAAEALITPrtraIALVT-PN--NPTGVVY 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 265 SKERRMELIELSELYQFFIIEDdsfgEIY--FEDAIIPP------PiksfDKDGHVIYIKGFSKTLA-PGLRIAALIADG 335
Cdd:PRK07550 181 PPELLHELYDLARRHGIALILD----ETYrdFDSGGGAPhdlfadP----DWDDTLVHLYSFSKSYAlTGHRVGAVVASP 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 336 PIFEWLYAVKGSMDIGSPLLTQKAL---LPFLRAERMKNHLEKLRtalqmRRDLTIDILSPLKElhFEI-PNGGFNLWVT 411
Cdd:PRK07550 253 ARIAEIEKFMDTVAICAPRIGQIAVawgLPNLADWRAGNRAEIAR-----RRDAFRAVFARLPG--WELlASGAYFAYVR 325
|
330 340
....*....|....*....|....*..
gi 446629445 412 LP-DSIDPFTLLQK-ANEVDVSFLPGT 436
Cdd:PRK07550 326 HPfPDRPSREVARRlAKEAGILCLPGT 352
|
|
| WHTH_GntR |
cd07377 |
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional ... |
12-76 |
5.23e-18 |
|
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.
Pssm-ID: 153418 [Multi-domain] Cd Length: 66 Bit Score: 77.87 E-value: 5.23e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446629445 12 PYYKQIYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYI 76
Cdd:cd07377 1 PLYEQIADQLREAILSGELKPGDRLPSERELAEELGVSRTTVREALRELEAEGLVERRPGRGTFV 65
|
|
| PRK05957 |
PRK05957 |
pyridoxal phosphate-dependent aminotransferase; |
148-474 |
7.45e-18 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235654 Cd Length: 389 Bit Score: 85.12 E-value: 7.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKL-VTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCY-SAALDIFINKGVQIIP 225
Cdd:PRK05957 61 YQAVQGIPPLLEAITQKLQQDNGIeLNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYfNHEMAITMAGCQPILV 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 226 VSLDNHGVRSDLIDDICQSKNPVLLYTNPtfQNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAIIPPPIKS 305
Cdd:PRK05957 141 PTDDNYQLQPEAIEQAITPKTRAIVTISP--NNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSI 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 306 FDKDGHVIYIKGFSKTLA-PGLRIAALIAdgPIfEWLYAVKGSMD---IGSPLLTQKALLPFLRAER--MKNHLEklrtA 379
Cdd:PRK05957 219 PGSGNHTISLYSLSKAYGfASWRIGYMVI--PI-HLLEAIKKIQDtilICPPVVSQYAALGALQVGKsyCQQHLP----E 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 380 LQMRRDLTIDILSPLKELHFEI-PNGGFNLWVTLPDSIDPFTLLQK-ANEVDVSFLPGTACLLnyeTNDNQLRISYSMLN 457
Cdd:PRK05957 292 IAQVRQILLKSLGQLQDRCTLHpANGAFYCFLKVNTDLNDFELVKQlIREYRVAVIPGTTFGM---KNGCYLRIAYGALQ 368
|
330
....*....|....*..
gi 446629445 458 EKDMEIGLEKLHDTIRN 474
Cdd:PRK05957 369 KATAKEGIERLVQGLKT 385
|
|
| HisC |
COG0079 |
Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase [Amino acid ... |
127-381 |
1.27e-17 |
|
Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase [Amino acid transport and metabolism]; Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 439849 [Multi-domain] Cd Length: 341 Bit Score: 84.03 E-value: 1.27e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 127 NPF-----LADEMHKLLDKnpmlLATYgPVQGDYELRVEIANYLNehqklvTDPSQLLITSGAQQGIDLIAQTLLKPGDI 201
Cdd:COG0079 23 NPYgpppkVLEAIAAALDA----LNRY-PDPDATALREALAEYYG------VPPEQVLVGNGSDELIQLLARAFLGPGDE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 202 VLVESPCYSA---ALDIFinkGVQIIPVSLD-NHGVRSDLIDDICQSKNPVLLYTNPTfqNPTGTVMSKERRMELIELSE 277
Cdd:COG0079 92 VLVPEPTFSEypiAARAA---GAEVVEVPLDeDFSLDLDALLAAITERTDLVFLCNPN--NPTGTLLPREELEALLEALP 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 278 LYQFFIIeDDSFGEiyF----EDAIipPPIKSFDkdgHVIYIKGFSKTLA-PGLRIAALIADGPIFEWLYAVKGSMDIGS 352
Cdd:COG0079 167 ADGLVVV-DEAYAE--FvpeeDSAL--PLLARYP---NLVVLRTFSKAYGlAGLRLGYAIASPELIAALRRVRGPWNVNS 238
|
250 260 270
....*....|....*....|....*....|....*..
gi 446629445 353 plLTQKALL------PFLRAERMKNH--LEKLRTALQ 381
Cdd:COG0079 239 --LAQAAALaaledrAYLEETRARLRaeRERLAAALR 273
|
|
| tyr_amTase_E |
TIGR01264 |
tyrosine aminotransferase, eukaryotic; This model describes tyrosine aminotransferase as found ... |
124-437 |
1.23e-16 |
|
tyrosine aminotransferase, eukaryotic; This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. [Energy metabolism, Amino acids and amines]
Pssm-ID: 273529 [Multi-domain] Cd Length: 401 Bit Score: 81.75 E-value: 1.23e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 124 LLPNPFLADEMHKLLDKNpmLLATYGPVQGDYELRVEIANYLNeHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVL 203
Cdd:TIGR01264 47 LPTDPEVMQAMKDSLDSG--KYNGYAPTVGALSAREAIASYYH-NPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNIL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 204 VESPCYSAALDIFINKGVQIIPVS-LDNHGVRSDL--IDDICQSKNPVLLYTNPTfqNPTGTVMSKERRMELIELSELYQ 280
Cdd:TIGR01264 124 VPRPGFPLYETLAESMGIEVKLYNlLPDKSWEIDLkqLESLIDEKTAALIVNNPS--NPCGSVFSRQHLEEILAVAERQC 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 281 FFIIEDDSFGEIYFEDAIIpPPIKSFDKDGHVIYIKGFSKT-LAPGLRIAALIADGP------IFEWLYAVKGSMdIGSP 353
Cdd:TIGR01264 202 LPIIADEIYGDMVFSGATF-EPLASLSSTVPILSCGGLAKRwLVPGWRLGWIIIHDRrgilrdIRDGLVKLSQRI-LGPC 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 354 LLTQKALLPFLRaERMKNHLEKLRTALQMRRDLTIDILSPLKELHFEIPNGGFNLWVTL-----PDSIDPFTLLQK-ANE 427
Cdd:TIGR01264 280 TIVQGALPSILL-RTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIemehfPEFKNDVEFTERlVAE 358
|
330
....*....|
gi 446629445 428 VDVSFLPGTA 437
Cdd:TIGR01264 359 QSVFCLPGSC 368
|
|
| PRK06836 |
PRK06836 |
pyridoxal phosphate-dependent aminotransferase; |
113-436 |
2.51e-16 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180720 Cd Length: 394 Bit Score: 80.62 E-value: 2.51e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 113 YNFSqailyprlLPNPFL------ADEMHKLLDKNPMLLATYGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQ 186
Cdd:PRK06836 36 FDFS--------LGNPSVpppaavKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 187 GIDLIAQTLLKPGDIVLVESPcYSAALDIFI-NKGVQIIPVSLDNHGVRSDLiDDICQSKNP---VLLYTNPtfQNPTGT 262
Cdd:PRK06836 108 ALNVALKAILNPGDEVIVFAP-YFVEYRFYVdNHGGKLVVVPTDTDTFQPDL-DALEAAITPktkAVIINSP--NNPTGV 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 263 VMSKErrmELIELSEL---------YQFFIIEDDSFGEIYFEDAIIPPPIKSFDkdgHVIYIKGFSKTLA-PGLRI--AA 330
Cdd:PRK06836 184 VYSEE---TLKALAALleekskeygRPIYLISDEPYREIVYDGAEVPYIFKYYD---NSIVVYSFSKSLSlPGERIgyIA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 331 LIADGPIFEWLYA--VKGSMDIG---SPLLTQKALLPFLRAERMKNhleklrtALQMRRDLTIDIlspLKELHFEI--PN 403
Cdd:PRK06836 258 VNPEMEDADDLVAalVFANRILGfvnAPALMQRVVAKCLDATVDVS-------IYKRNRDLLYDG---LTELGFECvkPQ 327
|
330 340 350
....*....|....*....|....*....|...
gi 446629445 404 GGFNLWVTLPDSiDPFTLLQKANEVDVSFLPGT 436
Cdd:PRK06836 328 GAFYLFPKSPEE-DDVAFCEKAKKHNLLLVPGS 359
|
|
| PRK07681 |
PRK07681 |
LL-diaminopimelate aminotransferase; |
109-437 |
3.72e-16 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 181081 Cd Length: 399 Bit Score: 80.24 E-value: 3.72e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 109 HRKYYNFSqaILYPRLLPNPFLADEM-HKLLDKNpmllaTYG-PVQGDYELRVEIANYLNEHQKLVTDP-SQLLITSGAQ 185
Cdd:PRK07681 31 GHKMIDLS--IGNPDMPPADFVREEMvHTANQKE-----SYGyTLSGIQEFHEAVTEYYNNTHNVILNAdKEVLLLMGSQ 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 186 QGIDLIAQTLLKPGDIVLVESPCYSAaldifINKGVQI-------IPVSLDNH---GVRSdLIDDICQsKNPVLLYTNPT 255
Cdd:PRK07681 104 DGLVHLPMVYANPGDIILVPDPGYTA-----YETGIQMagatsyyMPLKKENDflpDLEL-IPEEIAD-KAKMMILNFPG 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 256 fqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFeDAIIPPPIKSFDKDGHV-IYIKGFSKTLA-PGLRIAALIA 333
Cdd:PRK07681 177 --NPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYF-DGNKPISFLSVPGAKEVgVEINSLSKSYSlAGSRIGYMIG 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 334 DGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRaeRMKNHLEKLRTALQMRRDLTIDilsPLKELHFEI--PNGGFNLWVT 411
Cdd:PRK07681 254 NEEIVRALTQFKSNTDYGVFLPIQKAACAALR--NGAAFCEKNRGIYQERRDTLVD---GFRTFGWNVdkPAGSMFVWAE 328
|
330 340 350
....*....|....*....|....*....|
gi 446629445 412 LPDSIDP--FT--LLQKANevdVSFLPGTA 437
Cdd:PRK07681 329 IPKGWTSlsFAyaLMDRAN---VVVTPGHA 355
|
|
| PRK09276 |
PRK09276 |
LL-diaminopimelate aminotransferase; Provisional |
125-436 |
3.76e-15 |
|
LL-diaminopimelate aminotransferase; Provisional
Pssm-ID: 181749 Cd Length: 385 Bit Score: 76.87 E-value: 3.76e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 125 LPNP-FLADEMHKLLdKNPmllAT--YGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITS-GAQQGIDLIAQTLLKPGD 200
Cdd:PRK09276 43 LPTPdHIIEAMCKAV-EDP---ENhqYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLiGSKEGIAHIPLAFVNPGD 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 201 IVLVESPCYS--AALDIFINKGVQIIPVSLDNhGVRSDL--I-DDICQ-SKNPVLLYTNptfqNPTGTVMSKERRMELIE 274
Cdd:PRK09276 119 VVLVPDPGYPvyKIGTIFAGGEPYFMPLKEEN-GFLPDLdaIpEDVAKkAKLMFINYPN----NPTGAVADLEFFEEVVD 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 275 LSELYQFFIIEDDSFGEIYFeDAIIPPPIKSFDKDGHV-IYIKGFSKTL-APGLRIAALIADGPIFEWLYAVKGSMDIGS 352
Cdd:PRK09276 194 FAKKYDIIVCHDAAYSEIAY-DGYKPPSFLEVPGAKDVgIEFHSLSKTYnMTGWRIGFAVGNADLIAGLGKVKSNVDSGV 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 353 PLLTQKALLPFLRAErmKNHLEKLRTALQMRRDLTIDilsPLKELHFEI--PNGGFNLWVTLP---DSIDpFT--LLQKA 425
Cdd:PRK09276 273 FQAIQEAGIAALNGP--QEVVEELRKIYQERRDILVE---GLRKLGLEVepPKATFYVWAPVPkgyTSAE-FAtlLLDKA 346
|
330
....*....|.
gi 446629445 426 NevdVSFLPGT 436
Cdd:PRK09276 347 G---VVVTPGN 354
|
|
| MngR |
COG2188 |
DNA-binding transcriptional regulator, GntR family [Transcription]; |
8-76 |
8.70e-14 |
|
DNA-binding transcriptional regulator, GntR family [Transcription];
Pssm-ID: 441791 [Multi-domain] Cd Length: 238 Bit Score: 70.66 E-value: 8.70e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446629445 8 ETNIPYYKQIYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYI 76
Cdd:COG2188 1 SSPVPLYLQIADALRERIESGELPPGDRLPSERELAEEFGVSRMTVRKALDELVEEGLLERRQGRGTFV 69
|
|
| PRK08960 |
PRK08960 |
pyridoxal phosphate-dependent aminotransferase; |
148-409 |
9.82e-14 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 181595 Cd Length: 387 Bit Score: 72.78 E-value: 9.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDI--FINKGVQIIP 225
Cdd:PRK08960 65 YTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFlrLVEGAAQLVP 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 226 VSLD-NHGVRSDLIDDICQSKNPVLLYTNPTfqNPTGTVMSkerRMELIELSELYQ----FFIIEDDSFGEIYFEDAiip 300
Cdd:PRK08960 145 VGPDsRYQLTPALVERHWNADTVGALVASPA--NPTGTLLS---RDELAALSQALRarggHLVVDEIYHGLTYGVDA--- 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 301 PPIKSFDKDGHViyIKGFSKTLA-PGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRAERMKNhLEKLRTA 379
Cdd:PRK08960 217 ASVLEVDDDAFV--LNSFSKYFGmTGWRLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEPETLAI-LEARRAE 293
|
250 260 270
....*....|....*....|....*....|...
gi 446629445 380 LQMRRDLtidILSPLKELHFEI---PNGGFNLW 409
Cdd:PRK08960 294 FARRRDF---LLPALRELGFGIavePQGAFYLY 323
|
|
| avtA |
PRK09440 |
valine--pyruvate transaminase; Provisional |
132-473 |
3.20e-13 |
|
valine--pyruvate transaminase; Provisional
Pssm-ID: 236517 Cd Length: 416 Bit Score: 71.04 E-value: 3.20e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 132 DEMHKLLDkNPML---LATYGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGD------IV 202
Cdd:PRK09440 52 DLLADLLA-SGKLteaLGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRAdgslkkIL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 203 LVESPCY----SAAL--DIFInkGVQIIPVSLDNH--GVRSDL----IDD----ICQSKnpvllytnPTfqNPTGTVMSK 266
Cdd:PRK09440 131 FPLAPEYigyaDAGLeeDLFV--SYRPNIELLPEGqfKYHVDFehlhIDEdtgaICVSR--------PT--NPTGNVLTD 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 267 ERRMELIELSELYQFFIIEDDSFG----EIYFEDAiiPPPIksfdkDGHVIYIKGFSKTLAPGLRIAALIADGPIFEWLY 342
Cdd:PRK09440 199 EELEKLDALARQHNIPLLIDNAYGppfpGIIFSEA--TPLW-----NPNIILCMSLSKLGLPGVRCGIVIADEEIIEALS 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 343 AVKGSMDIGSPLLTQKALLPFLRAERMKNHLEK-LRTALQMRRDLTIDIL-SPLKELHFEI--PNGGFNLWVTLPD-SID 417
Cdd:PRK09440 272 NMNGIISLAPGRLGPAIAAEMIESGDLLRLSETvIRPFYRQKVQLAIALLrRYLPDEPCLIhkPEGAIFLWLWFKDlPIT 351
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446629445 418 PFTLLQKANEVDV------SFLPGtaclLNYETNDNQ--LRISYSMlNEKDMEIGLEKLHDTIR 473
Cdd:PRK09440 352 TEELYQRLKARGVlvvpghYFFPG----LDEDWPHAHqcIRMNYVQ-DDEEIEKGIAILAEEVE 410
|
|
| HTH_GNTR |
smart00345 |
helix_turn_helix gluconate operon transcriptional repressor; |
17-76 |
7.96e-13 |
|
helix_turn_helix gluconate operon transcriptional repressor;
Pssm-ID: 197669 [Multi-domain] Cd Length: 60 Bit Score: 62.98 E-value: 7.96e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 17 IYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYI 76
Cdd:smart00345 1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRPGSGTFV 60
|
|
| PRK05942 |
PRK05942 |
aspartate aminotransferase; Provisional |
148-437 |
1.44e-12 |
|
aspartate aminotransferase; Provisional
Pssm-ID: 180317 Cd Length: 394 Bit Score: 68.98 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDP-SQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQIIPV 226
Cdd:PRK05942 69 YPPFEGTASFRQAITDWYHRRYGVELDPdSEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAYPAHFRGPLIAGAQIYPI 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 227 SL---DNHGVRSDLIDDICQSKNPVLLYTNPTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFeDAIIP--- 300
Cdd:PRK05942 149 ILkpeNDWLIDLSSIPEEVAQQAKILYFNYPS--NPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAF-DGYQPtsl 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 301 ---PPIKSFDKDGHVIyikgfSKTL-APGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRAErmKNHLEKL 376
Cdd:PRK05942 226 leiPGAKDIGVEFHTL-----SKTYnMAGWRVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLP--DSYLQQV 298
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446629445 377 RTALQMRRDLTIDILSplkELHFEIP--NGGFNLWVTLP---DSID-PFTLLQKANevdVSFLPGTA 437
Cdd:PRK05942 299 QERYRTRRDFLIQGLG---ELGWNIPptKATMYLWVPCPvgmGSTDfALNVLQKTG---VVVTPGNA 359
|
|
| GntR |
pfam00392 |
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the ... |
14-76 |
1.56e-12 |
|
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerization domain. The GntR-like proteins include the following sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA, DevA, DasR. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships. The DasR regulator has been shown to be a global regulator of primary metabolism and development in Streptomyces coelicolor.
Pssm-ID: 306822 [Multi-domain] Cd Length: 64 Bit Score: 62.25 E-value: 1.56e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446629445 14 YKQIYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYI 76
Cdd:pfam00392 2 YEQVYARLREDILSGRLRPGDKLPSERELAAEFGVSRTTVREALRRLEAEGLVERRQGRGTFV 64
|
|
| PRK09147 |
PRK09147 |
succinyldiaminopimelate transaminase; Provisional |
126-435 |
6.88e-12 |
|
succinyldiaminopimelate transaminase; Provisional
Pssm-ID: 236393 Cd Length: 396 Bit Score: 66.82 E-value: 6.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 126 PNP-FLADEMHKLLDKnpmlLATYGPVQGDYELRVEIANYLNEHQKLVT-DP-SQLLITSGAQQGIDLIAQTLL---KPG 199
Cdd:PRK09147 42 PTPaFIKDALAANLDG----LASYPTTAGLPALREAIAAWLERRYGLPAlDPaTQVLPVNGSREALFAFAQTVIdrdGPG 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 200 DIVLVESPCYS----AAL-----DIFINkgvqiipvSLDNHGVRSD---LIDDI---CQsknpvLLYT-NPTfqNPTGTV 263
Cdd:PRK09147 118 PLVVCPNPFYQiyegAALlagaePYFLN--------CDPANNFAPDfdaVPAEVwarTQ-----LLFVcSPG--NPTGAV 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 264 MSKERRMELIELSELYQFFIIEDDSFGEIYFEDAiIPPP-------------------IKSFDKDGHViyikgfsktlaP 324
Cdd:PRK09147 183 LPLDDWKKLFALSDRYGFVIASDECYSEIYFDEA-APPLglleaaaelgrddfkrlvvFHSLSKRSNV-----------P 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 325 GLRIAALIADGPIFE--WLY-AVKGS-MdigsPLLTQKAllpFLRAERMKNHLEKLRTALQMRRDLTIDILSPLkeLHFE 400
Cdd:PRK09147 251 GLRSGFVAGDAALLKkfLLYrTYHGCaM----PPAVQAA---SIAAWNDEAHVRENRALYREKFDAVTPILAPV--LDVQ 321
|
330 340 350
....*....|....*....|....*....|....*..
gi 446629445 401 IPNGGFNLWVTLPDSIDPFT--LLQKANevdVSFLPG 435
Cdd:PRK09147 322 LPDAGFYLWAKVPGDDTEFArrLYADYN---VTVLPG 355
|
|
| PRK06225 |
PRK06225 |
pyridoxal phosphate-dependent aminotransferase; |
123-359 |
1.85e-11 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235749 [Multi-domain] Cd Length: 380 Bit Score: 65.54 E-value: 1.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 123 RLLPNPFLADEMHKLLDKNPmlLATYGPVQGDYELRVEIANYLNehqklvTDPSQLLITSGAQQGIDLIAQTLLKPGDIV 202
Cdd:PRK06225 39 HLGPHEEVREAMIRCIEEGE--YCKYPPPEGFPELRELILKDLG------LDDDEALITAGATESLYLVMRAFLSPGDNA 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 203 LVESPCYsAALDIFINK---GVQIIPV--SLDNHGVRSDLIDDICQSKNPVLLYTNPTfqNPTGTVMSKERRMELIELSE 277
Cdd:PRK06225 111 VTPDPGY-LIIDNFASRfgaEVIEVPIysEECNYKLTPELVKENMDENTRLIYLIDPL--NPLGSSYTEEEIKEFAEIAR 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 278 LYQFFIIEDdsfgeIYFED-AIIPPPIKSFDKDgHVIYIKGFSKTLA-PGLRIAALIADGPIFEWLYAVKGSmDIGSPLL 355
Cdd:PRK06225 188 DNDAFLLHD-----CTYRDfAREHTLAAEYAPE-HTVTSYSFSKIFGmAGLRIGAVVATPDLIEVVKSIVIN-DLGTNVI 260
|
....
gi 446629445 356 TQKA 359
Cdd:PRK06225 261 AQEA 264
|
|
| PLN02656 |
PLN02656 |
tyrosine transaminase |
148-468 |
4.06e-11 |
|
tyrosine transaminase
Pssm-ID: 178262 [Multi-domain] Cd Length: 409 Bit Score: 64.56 E-value: 4.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEH--QKLVTDpsQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCY-----SAALDIFINKG 220
Cdd:PLN02656 69 YAPTVGLPQARRAIAEYLSRDlpYKLSLD--DVFITSGCTQAIDVALSMLARPGANILLPRPGFpiyelCAAFRHLEVRY 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 221 VQIIPvsldNHGVRSDL--IDDICQSKNPVLLYTNPTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAI 298
Cdd:PLN02656 147 VDLLP----EKGWEVDLdaVEALADQNTVALVIINPG--NPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 299 IpPPIKSFDKDGHVIYIKGFSKT-LAPGLRIAALIADGP--IF---EWLYAVKGSMDI-GSPLLTQKALLPFLRAERMKN 371
Cdd:PLN02656 221 F-VPMGVFGSIVPVLTLGSLSKRwIVPGWRLGWFVTTDPsgSFrdpKIVERIKKYFDIlGGPATFIQAAVPTILEQTDES 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 372 HLEKLRTALQMRRDLTID-------ILSPLKelhfeiPNGGFNLWVTL--------PDSID-PFTLlqkANEVDVSFLPG 435
Cdd:PLN02656 300 FFKKTINILKQSSDICCDrikeipcITCPHK------PEGSMAVMVKLnlsllediSDDIDfCFKL---AREESVIILPG 370
|
330 340 350
....*....|....*....|....*....|...
gi 446629445 436 TACLLNyetndNQLRISYSMlNEKDMEIGLEKL 468
Cdd:PLN02656 371 TAVGLK-----NWLRITFAA-DPSSLEEALGRI 397
|
|
| PRK06290 |
PRK06290 |
LL-diaminopimelate aminotransferase; |
153-413 |
4.46e-11 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 235772 Cd Length: 410 Bit Score: 64.67 E-value: 4.46e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 153 GDYELRVEIANYLNEHQKL-VTDPSQLLITS-GAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQIIPVSL-D 229
Cdd:PRK06290 82 GIQEFKEAAARYMEKVFGVkDIDPVTEVIHSiGSKPALAMLPSCFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLlE 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 230 NHGVRSDLI---DDICqsKNPVLLYTN-PtfQNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAiiPPPIKS 305
Cdd:PRK06290 162 ENNFLPDLDsipKDIK--EKAKLLYLNyP--NNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGK--PLSFLS 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 306 FDKDGHV-IYIKGFSKTL-APGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRAERMknhLEKLRTALQMR 383
Cdd:PRK06290 236 VPGAKEVgVEIHSLSKAYnMTGWRLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEI---TEKIREKYSRR 312
|
250 260 270
....*....|....*....|....*....|..
gi 446629445 384 RDLTIDIlspLKELHF--EIPNGGFNLWVTLP 413
Cdd:PRK06290 313 LDKLVKI---LNEVGFkaEMPGGTFYLYVKAP 341
|
|
| PRK07777 |
PRK07777 |
putative succinyldiaminopimelate transaminase DapC; |
148-392 |
4.79e-11 |
|
putative succinyldiaminopimelate transaminase DapC;
Pssm-ID: 236095 [Multi-domain] Cd Length: 387 Bit Score: 64.29 E-value: 4.79e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDP-SQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCY-SAALDIFINKGVQIiP 225
Cdd:PRK07777 57 YPPGPGIPELRAAIAAQRRRRYGLEYDPdTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYdSYAAVIAMAGAHRV-P 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 226 VSLDNHGVRSDL-IDDICQSKNP---VLLYTNPtfQNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAiIPP 301
Cdd:PRK07777 136 VPLVPDGRGFALdLDALRAAVTPrtrALIVNSP--HNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGA-RHL 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 302 PIKSFD-KDGHVIYIKGFSKTLA-PGLRIAALIADGPIFEWLYAVKGSMDI--GSPLltQKALLPFLRAErmKNHLEKLR 377
Cdd:PRK07777 213 PLATLPgMRERTVTISSAAKTFNvTGWKIGWACGPAPLIAAVRAAKQYLTYvgGAPF--QPAVAHALDHE--DAWVAALR 288
|
250
....*....|....*
gi 446629445 378 TALQMRRDLTIDILS 392
Cdd:PRK07777 289 DSLQAKRDRLAAGLA 303
|
|
| PRK07324 |
PRK07324 |
transaminase; Validated |
131-334 |
7.09e-11 |
|
transaminase; Validated
Pssm-ID: 235989 Cd Length: 373 Bit Score: 63.80 E-value: 7.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 131 ADEMHKLLDKNPMllaTYGPVQGDYELRVEIANyLNEHQKlvtdPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYS 210
Cdd:PRK07324 44 PEAFYQELGQKKL---TYGWIEGSPEFKEAVAS-LYQNVK----PENILQTNGATGANFLVLYALVEPGDHVISVYPTYQ 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 211 AALDIFINKG--VQIIPVSLDNhgvrsDLIDDICQSKNPVLLYT------NPtfQNPTGTVMSKERRMELIELSELYQFF 282
Cdd:PRK07324 116 QLYDIPESLGaeVDYWQLKEEN-----GWLPDLDELRRLVRPNTklicinNA--NNPTGALMDRAYLEEIVEIARSVDAY 188
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446629445 283 IIEDdsfgEIYfedaiipppiKSFDKDGHV-----IYIKG-----FSKTLA-PGLRIAALIAD 334
Cdd:PRK07324 189 VLSD----EVY----------RPLDEDGSTpsiadLYEKGistnsMSKTYSlPGIRVGWIAAN 237
|
|
| PRK05839 |
PRK05839 |
succinyldiaminopimelate transaminase; |
138-435 |
2.44e-10 |
|
succinyldiaminopimelate transaminase;
Pssm-ID: 180281 Cd Length: 374 Bit Score: 62.01 E-value: 2.44e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 138 LDKNPMLLATYGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLL--KPGDIVLVESPCYS----A 211
Cdd:PRK05839 46 LKNNAHLLNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLfdKQNPTIAYPNPFYQiyegA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 212 AldIFINKGVQIIPVSLDNhGVRSDLIDDICQSKNPVLL-YTNptfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFG 290
Cdd:PRK05839 126 A--IASRAKVLLMPLTKEN-DFTPSLNEKELQEVDLVILnSPN----NPTGRTLSLEELIEWVKLALKHDFILINDECYS 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 291 EIYFEdaiIPPPI----------KSFDkdgHVIYIKGFSKTL-APGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKA 359
Cdd:PRK05839 199 EIYEN---TPPPSlleasilvgnESFK---NVLVINSISKRSsAPGLRSGFIAGDASILKKYKAYRTYLGCASPLPLQKA 272
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446629445 360 LlpfLRAERMKNHLEKLRTALQMRRDLTIDILSplkelhFEIPNGGFNLWVTLPDSIDpFT--LLQKANevdVSFLPG 435
Cdd:PRK05839 273 A---AVAWLDDEHAEFFRNIYAKNLKLAREILG------ITIPPATFYVWLPVDNDEE-FTkkLYQNEG---IKVLPG 337
|
|
| PLN02187 |
PLN02187 |
rooty/superroot1 |
147-468 |
3.32e-10 |
|
rooty/superroot1
Pssm-ID: 215119 [Multi-domain] Cd Length: 462 Bit Score: 62.05 E-value: 3.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 147 TYGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCY-----SAALDIFINKGV 221
Cdd:PLN02187 103 SYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFphydaRAAYSGLEVRKF 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 222 QIIPV---SLDNHGvrsdlIDDICQSKNPVLLYTNPtfQNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAi 298
Cdd:PLN02187 183 DLLPEkewEIDLEG-----IEAIADENTVAMVVINP--NNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDN- 254
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 299 ippPIKSFDKDGH---VIYIKGFSKT-LAPGLRIAALIADGP--IFEW---LYAVKGSMDIG-SPLLTQKALLPFLRAER 368
Cdd:PLN02187 255 ---PFVSMGKFASivpVLTLAGISKGwVVPGWKIGWIALNDPegVFETtkvLQSIKQNLDVTpDPATIIQAALPAILEKA 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 369 MKNHLEKLRTALQMRRDLTID-------ILSPLK--ELHFEIPNGGFNLWVTLPDSIDpfTLLQKANEVDVSFLPGTACL 439
Cdd:PLN02187 332 DKNFFAKKNKILKHNVDLVCDrlkdipcVVCPKKpeSCTYLLTKLELSLMDNIKDDID--FCVKLAREENLVFLPGDALG 409
|
330 340
....*....|....*....|....*....
gi 446629445 440 LNyetndNQLRISYSmLNEKDMEIGLEKL 468
Cdd:PLN02187 410 LK-----NWMRITIG-VEAHMLEDALERL 432
|
|
| PRK09148 |
PRK09148 |
LL-diaminopimelate aminotransferase; |
157-435 |
3.37e-09 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 181674 [Multi-domain] Cd Length: 405 Bit Score: 58.54 E-value: 3.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 157 LRVEIANYLNEHQKLVTDP-SQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQI--IPVSLDNHGV 233
Cdd:PRK09148 73 LRRAQAAYYARRFGVKLNPdTQVVATLGSKEGFANMAQAITAPGDVILCPNPSYPIHAFGFIMAGGVIrsVPAEPDEEFF 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 234 RSdLIDDICQS-KNPVLLYTN-PTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAiiPPPiksfdkdgH 311
Cdd:PRK09148 153 PA-LERAVRHSiPKPIALIVNyPS--NPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGN--PPP--------S 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 312 VIYIKG----------FSKTLA-PGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRAErmKNHLEKLRTAL 380
Cdd:PRK09148 220 VLQVPGakdvtveftsMSKTFSmAGWRMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNGP--QDCIAEMRELY 297
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446629445 381 QMRRDLTIDilsPLKELHFEIPN--GGFNLWVTLPD------SIDPFTLLQKanEVDVSFLPG 435
Cdd:PRK09148 298 KKRRDVLVE---SFGRAGWDIPPpaASMFAWAPIPEafrhlgSLEFSKLLVE--KADVAVAPG 355
|
|
| PRK06107 |
PRK06107 |
aspartate transaminase; |
148-410 |
4.50e-09 |
|
aspartate transaminase;
Pssm-ID: 180403 Cd Length: 402 Bit Score: 58.21 E-value: 4.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFI-NKGVQIIPV 226
Cdd:PRK06107 66 YTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLaNDGTPVIVA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 227 SLDNHGVR--SDLIDDICQSKNPVLLYTNPTfqNPTGTVMSkerRMELIELSELY----QFFIIEDDSFGEIYFEDAIIP 300
Cdd:PRK06107 146 CPEEQGFKltPEALEAAITPRTRWLILNAPS--NPTGAVYS---RAELRALADVLlrhpHVLVLTDDIYDHIRFDDEPTP 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 301 ------PPIKsfdkdGHVIYIKGFSKTLA-PGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRAErmKNHL 373
Cdd:PRK06107 221 hllaaaPELR-----DRVLVTNGVSKTYAmTGWRIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNGD--QSFV 293
|
250 260 270
....*....|....*....|....*....|....*..
gi 446629445 374 EKLRTALQMRRDLTIDILSPLKELHFEIPNGGFNLWV 410
Cdd:PRK06107 294 TESVAVYKQRRDYALALLNAIPGLSCLVPDGAFYLYV 330
|
|
| PLN00143 |
PLN00143 |
tyrosine/nicotianamine aminotransferase; Provisional |
147-468 |
6.11e-09 |
|
tyrosine/nicotianamine aminotransferase; Provisional
Pssm-ID: 165711 [Multi-domain] Cd Length: 409 Bit Score: 57.71 E-value: 6.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 147 TYGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQIIPV 226
Cdd:PLN00143 69 SYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFPDVETYAIFHHLEIRHF 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 227 S-LDNHGVRSDL--IDDICQSKNPVLLYTNPTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAIIpPPI 303
Cdd:PLN00143 149 DlLPEKGWEVDLdaVEAIADENTIAMVIINPG--NPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPF-VPM 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 304 KSFDKDGHVIYIKGFSKT-LAPGLRIAALIADGP-----IFEWLYAVKGSMDIG--SPLLTQKAlLPFLRAERMKNHLEK 375
Cdd:PLN00143 226 GLFASIVPVITLGSISKRwMIPGWGLGWLVTCDPsgllqICEIADSIKKALNPApfPPTFIQAA-IPEILEKTTEDFFSK 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 376 LRTALQMRRDLTIDILSPLKELHF-EIPNGGFNLWVTLPDSI------DPFTLLQKANEVDVSFLPGTACLLNyetndNQ 448
Cdd:PLN00143 305 TINILRAALAFCYDKLKEIPCIMCpQKAEGAFFALVKLNLLLlediedDMEFCLKLAKEESLIILPGVTVGLK-----NW 379
|
330 340
....*....|....*....|
gi 446629445 449 LRISYSmLNEKDMEIGLEKL 468
Cdd:PLN00143 380 LRITFA-VEQSSLEDGLGRL 398
|
|
| PTZ00377 |
PTZ00377 |
alanine aminotransferase; Provisional |
118-308 |
7.28e-09 |
|
alanine aminotransferase; Provisional
Pssm-ID: 240391 [Multi-domain] Cd Length: 481 Bit Score: 57.67 E-value: 7.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 118 AILYPRLLPNPFLADEMHK--------LLDKNPMLLATYGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGID 189
Cdd:PTZ00377 73 LVEYPFLLEDPSVSSLFPAdvvarakeYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIK 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 190 LIAQTLLK-PGDIVLV---ESPCYSAALDIFinkGVQIIPVSLD---NHGVR-SDL---IDDiCQSK--NP-VLLYTNPT 255
Cdd:PTZ00377 153 LLLQLLIGdPSDGVMIpipQYPLYSAAITLL---GGKQVPYYLDeekGWSLDqEELeeaYEQ-AVRNgiTPrALVVINPG 228
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446629445 256 fqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGE-IYFEDaiipPPIKSFDK 308
Cdd:PTZ00377 229 --NPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQEnIYDGE----KPFISFRK 276
|
|
| PRK07366 |
PRK07366 |
LL-diaminopimelate aminotransferase; |
147-435 |
3.04e-08 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 180947 Cd Length: 388 Bit Score: 55.45 E-value: 3.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 147 TYGPV--QGDYELRVEIANYLNEHQKLVTDP-SQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCY-SAALDIFINKGvQ 222
Cdd:PRK07366 61 THGYLlfHGTLDFREAAAQWYEQRFGLAVDPeTEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPGYpSHAGGVYLAGG-Q 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 223 IIPVSL--DNH--GVRSDLIDDIC-QSKNPVLLYTNptfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDA 297
Cdd:PRK07366 140 IYPMPLraENDflPVFADIPTEVLaQARLMVLSYPH----NPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGE 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 298 IIPPPIKSFDKDGHV-IYIKGFSKTL-APGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLRAErmKNHLEK 375
Cdd:PRK07366 216 VEPPSILQADPEKSVsIEFFTLSKSYnMGGFRIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTGP--QATVQQ 293
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446629445 376 LRTALQMRRDLTIDILSPLKeLHFEIPNGGFNLWVTLP-----DSIDPFTLLQKANEVDVSflPG 435
Cdd:PRK07366 294 TVQIFRQRRDAFINALHQIG-WPVPLPEATMYVWAKLPepwqgNSVEFCTQLVAQTGVAAS--PG 355
|
|
| PLN02376 |
PLN02376 |
1-aminocyclopropane-1-carboxylate synthase |
145-294 |
3.68e-08 |
|
1-aminocyclopropane-1-carboxylate synthase
Pssm-ID: 178004 [Multi-domain] Cd Length: 496 Bit Score: 55.47 E-value: 3.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 145 LATYGPVQGDYELRVEIANYLNEHQ--KLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSA-ALDIFINKGV 221
Cdd:PLN02376 87 IANFQDYHGLKKFRQAIAHFMGKARggKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAfDRDLRWRTGV 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 222 QIIPV---SLDNHGVRSDLID---DICQSKNPV---LLYTNPTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEI 292
Cdd:PLN02376 167 EIIPVpcsSSDNFKLTVDAADwayKKAQESNKKvkgLILTNPS--NPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAAT 244
|
..
gi 446629445 293 YF 294
Cdd:PLN02376 245 VF 246
|
|
| PRK06207 |
PRK06207 |
pyridoxal phosphate-dependent aminotransferase; |
148-321 |
4.47e-08 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235742 Cd Length: 405 Bit Score: 55.16 E-value: 4.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDPS-QLLITSGAQQGIDLIAQTLLKPGDIVLVESPcysaalDIFINK------G 220
Cdd:PRK06207 74 YTEYRGDADIRELLAARLAAFTGAPVDAAdELIITPGTQGALFLAVAATVARGDKVAIVQP------DYFANRklveffE 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 221 VQIIPVSLD------NHGVRSDLIDDICQSKNPVLLYTNPtfQNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYF 294
Cdd:PRK06207 148 GEMVPVQLDylsadkRAGLDLDQLEEAFKAGVRVFLFSNP--NNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLY 225
|
170 180
....*....|....*....|....*..
gi 446629445 295 EDAIIPPPIKSFDKDGHVIYIKGFSKT 321
Cdd:PRK06207 226 DGTSYTHLRALPIDPENVITIMGPSKT 252
|
|
| FadR |
COG2186 |
DNA-binding transcriptional regulator, FadR family [Transcription]; |
14-76 |
1.17e-07 |
|
DNA-binding transcriptional regulator, FadR family [Transcription];
Pssm-ID: 441789 [Multi-domain] Cd Length: 232 Bit Score: 52.63 E-value: 1.17e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446629445 14 YKQIYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYI 76
Cdd:COG2186 9 AEQVAEQLRELILSGELKPGDRLPSERELAEQLGVSRTTVREALRALEALGLVEVRQGGGTFV 71
|
|
| PRK08636 |
PRK08636 |
LL-diaminopimelate aminotransferase; |
148-300 |
2.50e-07 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 236316 Cd Length: 403 Bit Score: 52.78 E-value: 2.50e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDP-SQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKG--VQII 224
Cdd:PRK08636 67 YSVSKGIYKLRLAICNWYKRKYNVDLDPeTEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAFILAGgnVHKM 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 225 PV------SLDNHGVRSDLIDDICQS-KNPVLLYTN-PtfQNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFED 296
Cdd:PRK08636 147 PLeynedfELDEDQFFENLEKALRESsPKPKYVVVNfP--HNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDG 224
|
....
gi 446629445 297 AIIP 300
Cdd:PRK08636 225 YKTP 228
|
|
| PLN02607 |
PLN02607 |
1-aminocyclopropane-1-carboxylate synthase |
174-470 |
5.48e-07 |
|
1-aminocyclopropane-1-carboxylate synthase
Pssm-ID: 215327 [Multi-domain] Cd Length: 447 Bit Score: 51.81 E-value: 5.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 174 DPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSA-ALDIFINKGVQIIPVSLD---NHGVRSDLIDDICQSKNPV- 248
Cdd:PLN02607 119 DPDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGfDRDLRWRTGVKIVPIHCDssnNFQVTPQALEAAYQEAEAAn 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 249 -----LLYTNPTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYF---EDAIIPPPIKSFDKDG-----HVIYi 315
Cdd:PLN02607 199 irvrgVLITNPS--NPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFsasEFVSVAEIVEARGYKGvaervHIVY- 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 316 kGFSKTLA-PGLRIaaliadGPIFEWLYA-VKGSMDIGSPLL----TQKALLPFLRAERM-KNHLEKLRTALQMRRDLti 388
Cdd:PLN02607 276 -SLSKDLGlPGFRV------GTIYSYNDKvVTTARRMSSFTLvssqTQHLLASMLSDEEFtENYIRTNRERLRKRYEM-- 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 389 dILSPLKELHFEI--PNGGFNLWVTLPDSIDPFTL-----LQKA--NEVDVSFLPGTACllnYETNDNQLRISYSMLNEK 459
Cdd:PLN02607 347 -IVQGLRRAGIEClkGNAGLFCWMNLSPLLETPTRegelaLWDSilREVKLNISPGSSC---HCSEPGWFRVCFANMSED 422
|
330
....*....|.
gi 446629445 460 DMEIGLEKLHD 470
Cdd:PLN02607 423 TLEVALKRIHR 433
|
|
| PLN02368 |
PLN02368 |
alanine transaminase |
145-287 |
1.03e-06 |
|
alanine transaminase
Pssm-ID: 177996 [Multi-domain] Cd Length: 407 Bit Score: 50.95 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 145 LATYGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLK-PGDIVLV---ESPCYSAALDIFinkG 220
Cdd:PLN02368 100 LGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRgEKDGVLVpvpQYPLYSATISLL---G 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 221 VQIIPVSLD---NHGVR-SDLIDDICQSKNP-----VLLYTNPTfqNPTGTVMSKERRMELIEL----------SELYQF 281
Cdd:PLN02368 177 GTLVPYYLEeseNWGLDvNNLRQSVAQARSKgitvrAMVIINPG--NPTGQCLSEANLREILKFcyqerlvllgDEVYQQ 254
|
....*.
gi 446629445 282 FIIEDD 287
Cdd:PLN02368 255 NIYQDE 260
|
|
| PLN03026 |
PLN03026 |
histidinol-phosphate aminotransferase; Provisional |
175-345 |
3.96e-06 |
|
histidinol-phosphate aminotransferase; Provisional
Pssm-ID: 178597 Cd Length: 380 Bit Score: 48.93 E-value: 3.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 175 PSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSA-ALDIFINkGVQIIPVSLdNHGVRSD---LIDDICQSKNPVLL 250
Cdd:PLN03026 103 SENILVGCGADELIDLLMRCVLDPGDKIIDCPPTFGMyVFDAAVN-GAEVIKVPR-TPDFSLDvprIVEAVETHKPKLLF 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 251 YTNPtfQNPTGTVMSKERRMELIELSELyqffIIEDdsfgEIYFEDAIIPPPIKSFDKDGHVIYIKGFSKTLA-PGLRIA 329
Cdd:PLN03026 181 LTSP--NNPDGSIISDDDLLKILELPIL----VVLD----EAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGlAGLRVG 250
|
170
....*....|....*.
gi 446629445 330 ALIADGPIFEWLYAVK 345
Cdd:PLN03026 251 YGAFPLSIIEYLWRAK 266
|
|
| trehalos_R_Bsub |
TIGR02404 |
trehalose operon repressor, B. subtilis-type; This family consists of repressors of the GntR ... |
14-84 |
4.85e-06 |
|
trehalose operon repressor, B. subtilis-type; This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. [Regulatory functions, DNA interactions]
Pssm-ID: 274116 [Multi-domain] Cd Length: 233 Bit Score: 47.74 E-value: 4.85e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446629445 14 YKQIYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYIYKRVKKDF 84
Cdd:TIGR02404 2 YEQIYQDLEQKITKGQYKEGDYLPSEHELMDQYGASRETVRKALNLLTERGYIQKIQGKGSIVLNRKQIEF 72
|
|
| PTZ00433 |
PTZ00433 |
tyrosine aminotransferase; Provisional |
124-362 |
5.09e-06 |
|
tyrosine aminotransferase; Provisional
Pssm-ID: 185613 Cd Length: 412 Bit Score: 48.63 E-value: 5.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 124 LLPNPFLADEMHKLLDKNpmLLATYGPVQGDYELRVEIANYLNehQKLVTDPSQ--------LLITSGAQQGIDLIAQTL 195
Cdd:PTZ00433 49 LLTPAIQTKALVEAVDSQ--ECNGYPPTVGSPEAREAVATYWR--NSFVHKESLkstikkdnVVLCSGVSHAILMALTAL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 196 LKPGDIVLVESPCYSAALDIFINKGVQIIPVSLD---NHGVRSDLIDDICQSKNPVLLYTNPTfqNPTGTVMSKERRMEL 272
Cdd:PTZ00433 125 CDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRpekDWEADLDEIRRLVDDRTKALIMTNPS--NPCGSNFSRKHVEDI 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 273 IELSELYQFFIIEDDSFGEIYFEDAIIpPPIKSFDKDGHVIYIKGFSKTL-APGLRIAALIADGPifewlYAVKGSMDIG 351
Cdd:PTZ00433 203 IRLCEELRLPLISDEIYAGMVFNGATF-TSVADFDTTVPRVILGGTAKNLvVPGWRLGWLLLVDP-----HGNGGDFLDG 276
|
250
....*....|.
gi 446629445 352 SPLLTQKALLP 362
Cdd:PTZ00433 277 MKRLGMLVCGP 287
|
|
| PRK09764 |
PRK09764 |
GntR family transcriptional regulator; |
10-177 |
7.50e-06 |
|
GntR family transcriptional regulator;
Pssm-ID: 182065 [Multi-domain] Cd Length: 240 Bit Score: 47.13 E-value: 7.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 10 NIPYYKQIYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYIYK-RVKKDfkpip 88
Cdd:PRK09764 3 HKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTYVKEeRVNYD----- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 89 ykwqqmktINVMRSQYAMNKHRKYYNFSQAILYPRLLPNPFLADEMH-------------KLLDKNPMLL-ATYGPVQGD 154
Cdd:PRK09764 78 --------IFQLTSFDEKLSDRHVDTHSEVLIFEVIPADDFLQQQLQitaqdrvwhvkrvRYRKQKPMALeETWMPLALF 149
|
170 180
....*....|....*....|....*...
gi 446629445 155 YELRVEIA-----NYLNEHQKLVTDPSQ 177
Cdd:PRK09764 150 PDLTWQVMenskyHFIEEVKKMVIDRSE 177
|
|
| PRK08175 |
PRK08175 |
aminotransferase; Validated |
148-414 |
8.42e-06 |
|
aminotransferase; Validated
Pssm-ID: 181268 [Multi-domain] Cd Length: 395 Bit Score: 47.78 E-value: 8.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDP-SQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQIIPV 226
Cdd:PRK08175 63 YSTSRGIPRLRRAISRWYQDRYDVDIDPeSEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSV 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 227 SLDNhGVR--SDLIDDICQS-KNPVLLYTN-PTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFeDAIIPPP 302
Cdd:PRK08175 143 PLVE-GVDffNELERAIRESyPKPKMMILGfPS--NPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY-DGWKAPS 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 303 IKSFD--KDghvIYIKGF--SKTL-APGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLPFLraERMKNHLEKLR 377
Cdd:PRK08175 219 IMQVPgaKD---VAVEFFtlSKSYnMAGWRIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAAL--EGDQQCVRDIA 293
|
250 260 270
....*....|....*....|....*....|....*..
gi 446629445 378 TALQMRRDLTIDILSPLKeLHFEIPNGGFNLWVTLPD 414
Cdd:PRK08175 294 EQYKRRRDVLVKGLHEAG-WMVEMPKASMYVWAKIPE 329
|
|
| PLN00145 |
PLN00145 |
tyrosine/nicotianamine aminotransferase; Provisional |
148-468 |
1.70e-05 |
|
tyrosine/nicotianamine aminotransferase; Provisional
Pssm-ID: 215074 [Multi-domain] Cd Length: 430 Bit Score: 47.07 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYS--AALDIFINKGVQ--- 222
Cdd:PLN00145 90 YSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPlyEARAVFSGLEVRhfd 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 223 IIPVS---LDNHGVRSdLIDdicqsKNPV-LLYTNPTfqNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYFEDAi 298
Cdd:PLN00145 170 LLPERgweVDLEGVEA-LAD-----ENTVaMVIINPN--NPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSK- 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 299 ipP--PIKSFDKDGHVIYIKGFSKT-LAPGLRIAALIADGP--IF---EWLYAVKGSMDIGS-PLLTQKALLPFLRA--- 366
Cdd:PLN00145 241 --PfvPMGVFGEVAPVLTLGSISKRwVVPGWRLGWIATCDPngILketKVVDSIRNYLNISTdPATFVQGAIPQIIAntk 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 367 -ERMKNHLEKLRTALQM--RRDLTID-ILSPLKelhfeiPNGGFNLWVTL--------PDSIDPFTLLQKanEVDVSFLP 434
Cdd:PLN00145 319 eEFFTKTLGLLKETADIcyEKIKEIKcITCPHK------PEGSMFVMVKLdlsclsgiKDDMDFCCKLAK--EESVVVLP 390
|
330 340 350
....*....|....*....|....*....|....
gi 446629445 435 GTAclLNYEtndNQLRISYSmLNEKDMEIGLEKL 468
Cdd:PLN00145 391 GSA--LGMK---NWLRITFA-IDPPSLEDGLERL 418
|
|
| C_P_lyase_phnF |
TIGR02325 |
phosphonates metabolism transcriptional regulator PhnF; All members of the seed alignment for ... |
17-79 |
1.78e-05 |
|
phosphonates metabolism transcriptional regulator PhnF; All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond. [Transport and binding proteins, Anions, Regulatory functions, DNA interactions]
Pssm-ID: 131378 [Multi-domain] Cd Length: 238 Bit Score: 45.93 E-value: 1.78e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446629445 17 IYMQIVDRIQS----GMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYIYKR 79
Cdd:TIGR02325 9 LWRQIADKIEQeiaaGHLRAGDYLPAEMQLAERFGVNRHTVRRAIAALVERGLLRAEQGRGTFVAAR 75
|
|
| PRK08912 |
PRK08912 |
aminotransferase; |
148-282 |
2.23e-05 |
|
aminotransferase;
Pssm-ID: 181580 Cd Length: 387 Bit Score: 46.51 E-value: 2.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNEHQKLVTDP-SQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIF-----INKGV 221
Cdd:PRK08912 59 YPPMMGLPELRQAVAAHYARFQGLDLDPeTEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDAYLPLIrraggVPRLV 138
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446629445 222 QIIPV--SLDnhgvRSDLIDDIcQSKNPVLLYTNPtfQNPTGTVMSKErrmELIELSELYQFF 282
Cdd:PRK08912 139 RLEPPhwRLP----RAALAAAF-SPRTKAVLLNNP--LNPAGKVFPRE---ELALLAEFCQRH 191
|
|
| PLN02231 |
PLN02231 |
alanine transaminase |
136-308 |
2.30e-05 |
|
alanine transaminase
Pssm-ID: 177876 [Multi-domain] Cd Length: 534 Bit Score: 46.86 E-value: 2.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 136 KLLDKNP-MLLATYGPVQGDYELRVEIANYLNEHQKLVTDPSQLLITSGAQQGIDLIAQTLLKP-GDIVLV---ESPCYS 210
Cdd:PLN02231 151 QILDQIPgRATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSeKDGILCpipQYPLYS 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 211 AALDIfinKGVQIIPVSLDNH---GVR-SDLIDDICQSKNP-----VLLYTNPTfqNPTGTVMSKERRMELIELSELYQF 281
Cdd:PLN02231 231 ASIAL---HGGTLVPYYLDEAtgwGLEiSELKKQLEDARSKgitvrALVVINPG--NPTGQVLAEENQRDIVEFCKQEGL 305
|
170 180
....*....|....*....|....*...
gi 446629445 282 FIIEDdsfgEIYFEDAIIP-PPIKSFDK 308
Cdd:PLN02231 306 VLLAD----EVYQENVYVPdKKFHSFKK 329
|
|
| PRK11402 |
PRK11402 |
transcriptional regulator PhoB; |
12-83 |
3.43e-05 |
|
transcriptional regulator PhoB;
Pssm-ID: 183118 [Multi-domain] Cd Length: 241 Bit Score: 45.21 E-value: 3.43e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446629445 12 PYYKQIYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYI-YKRVKKD 83
Cdd:PRK11402 9 LLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIRWQGKGTFVqSQKVENA 81
|
|
| PRK11523 |
PRK11523 |
transcriptional regulator ExuR; |
14-76 |
4.67e-05 |
|
transcriptional regulator ExuR;
Pssm-ID: 183176 [Multi-domain] Cd Length: 253 Bit Score: 44.84 E-value: 4.67e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446629445 14 YKQIYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYI 76
Cdd:PRK11523 10 YQQLAAELKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKGSGIHV 72
|
|
| PRK13355 |
PRK13355 |
bifunctional HTH-domain containing protein/aminotransferase; Provisional |
183-335 |
1.69e-04 |
|
bifunctional HTH-domain containing protein/aminotransferase; Provisional
Pssm-ID: 237361 [Multi-domain] Cd Length: 517 Bit Score: 43.96 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 183 GAQQGIDLIAQTLLKPGDIVLVESPCY---SAALDIFINKGVQIIPVSLDNHgvRSDlIDDI---CQSKNPVLLYTNPtf 256
Cdd:PRK13355 216 GVSELINLSMSALLDDGDEVLIPSPDYplwTACVNLAGGTAVHYRCDEQSEW--YPD-IDDIrskITSRTKAIVIINP-- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 257 QNPTGTVMSKERRMELIELSELYQFFIIEDdsfgEIY---FEDAIIPPPIKSFDKDGHVIYIKGFSKT-LAPGLRIAALI 332
Cdd:PRK13355 291 NNPTGALYPREVLQQIVDIAREHQLIIFSD----EIYdrlVMDGLEHTSIASLAPDLFCVTFSGLSKShMIAGYRIGWMI 366
|
...
gi 446629445 333 ADG 335
Cdd:PRK13355 367 LSG 369
|
|
| PLN00175 |
PLN00175 |
aminotransferase family protein; Provisional |
156-273 |
2.36e-04 |
|
aminotransferase family protein; Provisional
Pssm-ID: 215089 [Multi-domain] Cd Length: 413 Bit Score: 43.31 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 156 ELRVEIANYLNEHQKLVTDP-SQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSAALDIFINKGVQIIPVSL--DNHG 232
Cdd:PLN00175 95 ELNSAIAERFKKDTGLVVDPeKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEATLSMAGAKIKTVTLrpPDFA 174
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 446629445 233 VRSDLIDDICQSKNPVLLYTNPtfQNPTGTVMSKErRMELI 273
Cdd:PLN00175 175 VPEDELKAAFTSKTRAILINTP--HNPTGKMFTRE-ELELI 212
|
|
| PRK09082 |
PRK09082 |
methionine aminotransferase; Validated |
148-312 |
2.92e-04 |
|
methionine aminotransferase; Validated
Pssm-ID: 181642 [Multi-domain] Cd Length: 386 Bit Score: 42.98 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 148 YGPVQGDYELRVEIANYLNE-HQKLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCY-SAALDIFINKGVqIIP 225
Cdd:PRK09082 63 YPPMTGVAALREAIAAKTARlYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYdSYAPAIELAGGR-AVR 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 226 VSLDNHGVRSD---LIDDICQSKNPVLLYTnPtfQNPTGTVMSKERRMELIELSELYQFFIIEDDSFGEIYF-------- 294
Cdd:PRK09082 142 VALQPPDFRVDwqrFAAAISPRTRLIILNT-P--HNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFdgaghasv 218
|
170 180
....*....|....*....|....*
gi 446629445 295 -------EDAIIpppIKSFDKDGHV 312
Cdd:PRK09082 219 lrhpelrERAFV---VSSFGKTYHV 240
|
|
| Asp_aminotransf |
pfam12897 |
Aspartate amino-transferase; These proteins catalyze the reversible transfer of an amino group ... |
145-437 |
4.83e-04 |
|
Aspartate amino-transferase; These proteins catalyze the reversible transfer of an amino group from the amino acid substrate to an acceptor alpha-keto acid. They require pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze this reaction. Trans-amination reactions are of central importance in amino acid metabolism and in links to carbohydrate and fat metabolism. This class of amino-transferases acts as dimers in a head-to-tail configuration. It has been demonstrated that these proteins are aspartate amino-transferases from Bacteria (Jansen, R.S. et al. Nat Commun 11, 1960 (2020)).
Pssm-ID: 403948 Cd Length: 419 Bit Score: 42.54 E-value: 4.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 145 LATYGPVQGDYELRVEIANYLN--EHQKLVTDPSQLLItsgaqQGiDLIAQTLL------------KPGDIVLVESPCYS 210
Cdd:pfam12897 61 TRNYGGLAGLPEARAIFAEYLDvpTENVLVWNNSSLEL-----MH-LVLTFALLhgvrdgegpwvaQETVKFLCPVPGYD 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 211 AALDIFINKGVQIIPVSLDNHGVRSDLIDDICqSKNPVL--LYTNPTFQNPTGTVMSKERRMELIEL-SELYQFFIIEDD 287
Cdd:pfam12897 135 RHFAILETLGIEMITVDLQDDGPDMDAVERLV-AKDPSIkgIWFVPKYSNPTGETISEEVARRLAGMkTAAPDFRIFWDN 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 288 SFG--EIYFE---DAIIPPPIKSFDKDGHVIYIKGFSKTLAPGLRIAALIADGPIFEWLYAVKGSMDIGSPLLTQKALLP 362
Cdd:pfam12897 214 AYAvhHLVGEgdrDPNIVGLARDAGHPNRPFVFASTSKITFAGAGVGFVASSEDNIAWLGKYLGAQSIGPDKVNQLRHVR 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 363 FLRAER-----MKNHLEKLRTALQMRRDLTIDILSPLKELHFEIPNGGFnlWVTLpDSIDPFT--LLQKANEVDVSFLPG 435
Cdd:pfam12897 294 FLGDYEgleghMRRHAALIAPKFAAVLEILEAELGGGGYATWTEPRGGY--FISL-DTLDGVAkrVVALAKEAGVSLTPA 370
|
..
gi 446629445 436 TA 437
Cdd:pfam12897 371 GA 372
|
|
| PLN02994 |
PLN02994 |
1-aminocyclopropane-1-carboxylate synthase |
104-211 |
1.30e-03 |
|
1-aminocyclopropane-1-carboxylate synthase
Pssm-ID: 166635 [Multi-domain] Cd Length: 153 Bit Score: 39.22 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446629445 104 YAMNKHRKYYNfSQAILYPRLLPNPFLADEMHKLLDKNPML--------------LATYGPVQGDYELRVEIANYLNEHQ 169
Cdd:PLN02994 31 YDLNPFDLLHN-PQGIIQMGLAENQLCSDLIEEWIEENPHAdictaegtidsfkdIALFQDYHGLANFRKAIANFMAEAR 109
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 446629445 170 --KLVTDPSQLLITSGAQQGIDLIAQTLLKPGDIVLVESPCYSA 211
Cdd:PLN02994 110 ggRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYYAA 153
|
|
| PRK10225 |
PRK10225 |
Uxu operon transcriptional regulator; |
14-76 |
1.74e-03 |
|
Uxu operon transcriptional regulator;
Pssm-ID: 182318 [Multi-domain] Cd Length: 257 Bit Score: 40.00 E-value: 1.74e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446629445 14 YKQIYMQIVDRIQSGMLSHGESLPSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYI 76
Cdd:PRK10225 11 YQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRGAGIYV 73
|
|
| GntR |
COG1802 |
DNA-binding transcriptional regulator, GntR family [Transcription]; |
16-76 |
6.40e-03 |
|
DNA-binding transcriptional regulator, GntR family [Transcription];
Pssm-ID: 441407 [Multi-domain] Cd Length: 222 Bit Score: 37.98 E-value: 6.40e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446629445 16 QIYMQIVDRIQSGMLSHGESLpSLRCMATDLQINVLTVRKAYKQLETKGYIRIEQGKGAYI 76
Cdd:COG1802 15 QVYEALREAILSGELPPGERL-SEAELAERLGVSRTPVREALRRLEAEGLVEIRPNRGARV 74
|
|
| |
