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Conserved domains on  [gi|446629546|ref|WP_000706892|]
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MULTISPECIES: DotD/TraH family lipoprotein [Acinetobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DotD super family cl25130
DotD protein; The DotD protein is a component of the Dot/Icm type IVB secretion system. It is ...
 80-155 5.59e-05

DotD protein; The DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH.


The actual alignment was detected with superfamily member pfam16816:

Pssm-ID: 474523  Cd Length: 120  Bit Score: 40.46  E-value: 5.59e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446629546   80 VIRVDYVGEPQTLLQSAAYHFGYRFIEAGNIHQLP-IVNFSKRKLTGFDLIKDVGLQLGNSATVDVDENDKTITLIH 155
Cdd:pfam16816  44 RVSVDWQGPLEELLRQLAKQAGYTFAVLGKRPAIPvPININVKEEPLADILRSIGYQIGKRATIQVDPHHHTIELSY 120
 
Name Accession Description Interval E-value
DotD pfam16816
DotD protein; The DotD protein is a component of the Dot/Icm type IVB secretion system. It is ...
 80-155 5.59e-05

DotD protein; The DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH.


Pssm-ID: 435597  Cd Length: 120  Bit Score: 40.46  E-value: 5.59e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446629546   80 VIRVDYVGEPQTLLQSAAYHFGYRFIEAGNIHQLP-IVNFSKRKLTGFDLIKDVGLQLGNSATVDVDENDKTITLIH 155
Cdd:pfam16816  44 RVSVDWQGPLEELLRQLAKQAGYTFAVLGKRPAIPvPININVKEEPLADILRSIGYQIGKRATIQVDPHHHTIELSY 120
 
Name Accession Description Interval E-value
DotD pfam16816
DotD protein; The DotD protein is a component of the Dot/Icm type IVB secretion system. It is ...
 80-155 5.59e-05

DotD protein; The DotD protein is a component of the Dot/Icm type IVB secretion system. It is involved in the outer membrane targeting of DotH.


Pssm-ID: 435597  Cd Length: 120  Bit Score: 40.46  E-value: 5.59e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446629546   80 VIRVDYVGEPQTLLQSAAYHFGYRFIEAGNIHQLP-IVNFSKRKLTGFDLIKDVGLQLGNSATVDVDENDKTITLIH 155
Cdd:pfam16816  44 RVSVDWQGPLEELLRQLAKQAGYTFAVLGKRPAIPvPININVKEEPLADILRSIGYQIGKRATIQVDPHHHTIELSY 120
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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