MULTISPECIES: substrate-binding domain-containing protein [Bacillus]
Protein Classification
excise and PBP_like domain-containing protein( domain architecture ID 10019979)
excise and PBP_like domain-containing protein
List of domain hits
| Name | Accession | Description | Interval | E-value | |||||
| YvgK | COG1910 | Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]; |
1-313 | 3.37e-106 | |||||
Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]; : Pssm-ID: 441514 [Multi-domain] Cd Length: 328 Bit Score: 312.71 E-value: 3.37e-106
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| Name | Accession | Description | Interval | E-value | |||||
| YvgK | COG1910 | Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]; |
1-313 | 3.37e-106 | |||||
Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]; Pssm-ID: 441514 [Multi-domain] Cd Length: 328 Bit Score: 312.71 E-value: 3.37e-106
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| PBP_like | pfam12727 | PBP superfamily domain; This family belongs to the periplasmic binding domain superfamily. It ... |
97-287 | 9.22e-78 | |||||
PBP superfamily domain; This family belongs to the periplasmic binding domain superfamily. It is often associated with a helix-turn-helix domain. Pssm-ID: 463683 [Multi-domain] Cd Length: 192 Bit Score: 235.55 E-value: 9.22e-78
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| PRK14498 | PRK14498 | putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing ... |
85-299 | 1.01e-54 | |||||
putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional Pssm-ID: 237732 [Multi-domain] Cd Length: 633 Bit Score: 188.11 E-value: 1.01e-54
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| excise | TIGR01764 | DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein ... |
15-62 | 3.59e-15 | |||||
DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General] Pssm-ID: 200128 Cd Length: 49 Bit Score: 68.40 E-value: 3.59e-15
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| PBP2_CysP | cd01005 | Substrate binding domain of an active sulfate transporter, a member of the type 2 periplasmic ... |
167-193 | 8.00e-04 | |||||
Substrate binding domain of an active sulfate transporter, a member of the type 2 periplasmic binding fold superfamily; This family contains sulfate binding domain of CysP proteins that serve as initial receptors in the ABC transport of sulfate and thiosulfate in eubacteria. After binding the ligand, CysP interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The CysP proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270226 Cd Length: 307 Bit Score: 40.37 E-value: 8.00e-04
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| Name | Accession | Description | Interval | E-value | |||||
| YvgK | COG1910 | Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]; |
1-313 | 3.37e-106 | |||||
Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]; Pssm-ID: 441514 [Multi-domain] Cd Length: 328 Bit Score: 312.71 E-value: 3.37e-106
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| PBP_like | pfam12727 | PBP superfamily domain; This family belongs to the periplasmic binding domain superfamily. It ... |
97-287 | 9.22e-78 | |||||
PBP superfamily domain; This family belongs to the periplasmic binding domain superfamily. It is often associated with a helix-turn-helix domain. Pssm-ID: 463683 [Multi-domain] Cd Length: 192 Bit Score: 235.55 E-value: 9.22e-78
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| PRK14498 | PRK14498 | putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing ... |
85-299 | 1.01e-54 | |||||
putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional Pssm-ID: 237732 [Multi-domain] Cd Length: 633 Bit Score: 188.11 E-value: 1.01e-54
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| excise | TIGR01764 | DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein ... |
15-62 | 3.59e-15 | |||||
DNA binding domain, excisionase family; An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General] Pssm-ID: 200128 Cd Length: 49 Bit Score: 68.40 E-value: 3.59e-15
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| HTH_17 | pfam12728 | Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain. |
15-64 | 7.01e-15 | |||||
Helix-turn-helix domain; This domain is a DNA-binding helix-turn-helix domain. Pssm-ID: 463684 [Multi-domain] Cd Length: 51 Bit Score: 67.87 E-value: 7.01e-15
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| AlpA | COG3311 | DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]; |
15-67 | 8.69e-10 | |||||
DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]; Pssm-ID: 442540 [Multi-domain] Cd Length: 64 Bit Score: 54.16 E-value: 8.69e-10
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| Sbp | COG1613 | ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and ... |
169-185 | 4.92e-04 | |||||
ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]; Pssm-ID: 441221 Cd Length: 340 Bit Score: 41.27 E-value: 4.92e-04
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| PBP2_CysP | cd01005 | Substrate binding domain of an active sulfate transporter, a member of the type 2 periplasmic ... |
167-193 | 8.00e-04 | |||||
Substrate binding domain of an active sulfate transporter, a member of the type 2 periplasmic binding fold superfamily; This family contains sulfate binding domain of CysP proteins that serve as initial receptors in the ABC transport of sulfate and thiosulfate in eubacteria. After binding the ligand, CysP interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The CysP proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270226 Cd Length: 307 Bit Score: 40.37 E-value: 8.00e-04
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| HTH_MerR-trunc | cd04762 | Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins; Proteins in this family ... |
15-57 | 1.72e-03 | |||||
Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins; Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles. Pssm-ID: 133390 [Multi-domain] Cd Length: 49 Bit Score: 35.64 E-value: 1.72e-03
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| PBP2_ModA3_like | cd13517 | Substrate binding domain of molybdate binding protein-like (ModA3), a member of the type 2 ... |
171-291 | 3.75e-03 | |||||
Substrate binding domain of molybdate binding protein-like (ModA3), a member of the type 2 periplasmic binding fold superfamily; This subfamily contains molybdate binding protein-like (ModA3) domain of an ABC-type transporter. Molybdate transport system is comprised of a periplasmic binding protein, an integral membrane protein, and an energizer protein. These three proteins are coded by modA, modB, and modC genes, respectively. ModA proteins serve as initial receptors in the ABC transport of molybdate mostly in eubacteria and archaea. ModA transporters import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arrangted around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate where the central metal atom is in a hexacoordinate configuration. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. Pssm-ID: 270235 [Multi-domain] Cd Length: 223 Bit Score: 37.97 E-value: 3.75e-03
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| 3a0106s03 | TIGR00971 | sulfate/thiosulfate-binding protein; This model describes binding proteins functionally ... |
167-200 | 3.98e-03 | |||||
sulfate/thiosulfate-binding protein; This model describes binding proteins functionally associated with the sulfate ABC transporter. In the model bacterium E. coli, two different members work with the same transporter; mutation analysis says each enables the uptake of both sulfate and thiosulfate. In many species, a single binding protein is found, and may be referred to in general terms as a sulfate ABC transporter sulfate-binding protein. [Transport and binding proteins, Anions] Pssm-ID: 130044 Cd Length: 315 Bit Score: 38.41 E-value: 3.98e-03
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| PRK10852 | PRK10852 | thiosulfate ABC transporter substrate-binding protein CysP; |
168-193 | 4.18e-03 | |||||
thiosulfate ABC transporter substrate-binding protein CysP; Pssm-ID: 236775 Cd Length: 338 Bit Score: 38.58 E-value: 4.18e-03
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| ModA | COG0725 | ABC-type molybdate transport system, periplasmic Mo-binding protein ModA [Inorganic ion ... |
171-291 | 8.23e-03 | |||||
ABC-type molybdate transport system, periplasmic Mo-binding protein ModA [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, periplasmic Mo-binding protein ModA is part of the Pathway/BioSystem: Molybdopterin biosynthesis Pssm-ID: 440489 [Multi-domain] Cd Length: 253 Bit Score: 37.16 E-value: 8.23e-03
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| Blast search parameters | ||||
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