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Conserved domains on  [gi|446640656|ref|WP_000718002|]
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MULTISPECIES: entry exclusion lipoprotein TrbK [Bacteria]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
TrbK_RP4 super family cl17153
entry exclusion lipoprotein TrbK; The characterized model example of TrbK, from ...
17-78 2.35e-07

entry exclusion lipoprotein TrbK; The characterized model example of TrbK, from incompatibility group P (IncP) plasmid RP4, is an N-terminally processed lipoprotein, localized to the periplasmic face of the plasma membrane. TrbK prevents entry through conjugation by other IncP plasmids. Unrelated, uncharacterized proteins encoded in equivalent positions in other plasmid P-type conjugative transfer regions (e.g. TIGR04360) may have analogous functions. [Mobile and extrachromosomal element functions, Plasmid functions]


The actual alignment was detected with superfamily member TIGR04359:

Pssm-ID: 275153  Cd Length: 66  Bit Score: 43.29  E-value: 2.35e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446640656  17 GCEQERMPEPNAATCAPDAFQAalneMRSEANREAFTEECRAFQKAkqmrqwEFKPSPKDDY 78
Cdd:TIGR04359 15 GCDNEPMPEVNDENCKPENIKK----IEDKAQRQEFASKCLRRHRG------EFKPSPKKEW 66
 
Name Accession Description Interval E-value
TrbK_RP4 TIGR04359
entry exclusion lipoprotein TrbK; The characterized model example of TrbK, from ...
17-78 2.35e-07

entry exclusion lipoprotein TrbK; The characterized model example of TrbK, from incompatibility group P (IncP) plasmid RP4, is an N-terminally processed lipoprotein, localized to the periplasmic face of the plasma membrane. TrbK prevents entry through conjugation by other IncP plasmids. Unrelated, uncharacterized proteins encoded in equivalent positions in other plasmid P-type conjugative transfer regions (e.g. TIGR04360) may have analogous functions. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 275153  Cd Length: 66  Bit Score: 43.29  E-value: 2.35e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446640656  17 GCEQERMPEPNAATCAPDAFQAalneMRSEANREAFTEECRAFQKAkqmrqwEFKPSPKDDY 78
Cdd:TIGR04359 15 GCDNEPMPEVNDENCKPENIKK----IEDKAQRQEFASKCLRRHRG------EFKPSPKKEW 66
 
Name Accession Description Interval E-value
TrbK_RP4 TIGR04359
entry exclusion lipoprotein TrbK; The characterized model example of TrbK, from ...
17-78 2.35e-07

entry exclusion lipoprotein TrbK; The characterized model example of TrbK, from incompatibility group P (IncP) plasmid RP4, is an N-terminally processed lipoprotein, localized to the periplasmic face of the plasma membrane. TrbK prevents entry through conjugation by other IncP plasmids. Unrelated, uncharacterized proteins encoded in equivalent positions in other plasmid P-type conjugative transfer regions (e.g. TIGR04360) may have analogous functions. [Mobile and extrachromosomal element functions, Plasmid functions]


Pssm-ID: 275153  Cd Length: 66  Bit Score: 43.29  E-value: 2.35e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446640656  17 GCEQERMPEPNAATCAPDAFQAalneMRSEANREAFTEECRAFQKAkqmrqwEFKPSPKDDY 78
Cdd:TIGR04359 15 GCDNEPMPEVNDENCKPENIKK----IEDKAQRQEFASKCLRRHRG------EFKPSPKKEW 66
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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