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Conserved domains on  [gi|446642317|ref|WP_000719663|]
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MULTISPECIES: DUF4871 domain-containing protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF4871 super family cl24673
Domain of unknown function (DUF4871); This family consists of uncharacterized proteins around ...
 44-171 3.21e-82

Domain of unknown function (DUF4871); This family consists of uncharacterized proteins around 170 residues in length and is mainly found in various Bacillus species (B. cereus, B. thuringiensis and B. anthracis). The solved structure of B. anthracis homologs has a variant of the Greek-key beta barrel fold, making the DUF4870 family a member of a large group of bacterial immunoglobulin like domains, but the functional consequences of this classification remain unknown.


The actual alignment was detected with superfamily member pfam16167:

Pssm-ID: 406553  Cd Length: 128  Bit Score: 238.84  E-value: 3.21e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446642317   44 FFHLSVLKDVNWEETPSFIQEKTPLKGIEEKIALADSPIIANEKNEMMWYFLDPEMPTGKLSIIALKQGSVTPTPVLFQQ 123
Cdd:pfam16167   1 FFHLSVLKDVNWEETPSFIEEKIPLKGIEEKIAMADSPIIANEKNEIMWHFLDPEIPTGKLSIIALKQGSVTPTPLLFQK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 446642317  124 ETSKPTWTTSNTIDSTTTELPLTMSLPSSGLWVLNIYVNEKYYDQFVI 171
Cdd:pfam16167  81 ESSEPTWTTSNTIDSTTNELPLTMSLPSSGLWLLNIYVNEKYYDQFVI 128
 
Name Accession Description Interval E-value
DUF4871 pfam16167
Domain of unknown function (DUF4871); This family consists of uncharacterized proteins around ...
 44-171 3.21e-82

Domain of unknown function (DUF4871); This family consists of uncharacterized proteins around 170 residues in length and is mainly found in various Bacillus species (B. cereus, B. thuringiensis and B. anthracis). The solved structure of B. anthracis homologs has a variant of the Greek-key beta barrel fold, making the DUF4870 family a member of a large group of bacterial immunoglobulin like domains, but the functional consequences of this classification remain unknown.


Pssm-ID: 406553  Cd Length: 128  Bit Score: 238.84  E-value: 3.21e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446642317   44 FFHLSVLKDVNWEETPSFIQEKTPLKGIEEKIALADSPIIANEKNEMMWYFLDPEMPTGKLSIIALKQGSVTPTPVLFQQ 123
Cdd:pfam16167   1 FFHLSVLKDVNWEETPSFIEEKIPLKGIEEKIAMADSPIIANEKNEIMWHFLDPEIPTGKLSIIALKQGSVTPTPLLFQK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 446642317  124 ETSKPTWTTSNTIDSTTTELPLTMSLPSSGLWVLNIYVNEKYYDQFVI 171
Cdd:pfam16167  81 ESSEPTWTTSNTIDSTTNELPLTMSLPSSGLWLLNIYVNEKYYDQFVI 128
 
Name Accession Description Interval E-value
DUF4871 pfam16167
Domain of unknown function (DUF4871); This family consists of uncharacterized proteins around ...
 44-171 3.21e-82

Domain of unknown function (DUF4871); This family consists of uncharacterized proteins around 170 residues in length and is mainly found in various Bacillus species (B. cereus, B. thuringiensis and B. anthracis). The solved structure of B. anthracis homologs has a variant of the Greek-key beta barrel fold, making the DUF4870 family a member of a large group of bacterial immunoglobulin like domains, but the functional consequences of this classification remain unknown.


Pssm-ID: 406553  Cd Length: 128  Bit Score: 238.84  E-value: 3.21e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446642317   44 FFHLSVLKDVNWEETPSFIQEKTPLKGIEEKIALADSPIIANEKNEMMWYFLDPEMPTGKLSIIALKQGSVTPTPVLFQQ 123
Cdd:pfam16167   1 FFHLSVLKDVNWEETPSFIEEKIPLKGIEEKIAMADSPIIANEKNEIMWHFLDPEIPTGKLSIIALKQGSVTPTPLLFQK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 446642317  124 ETSKPTWTTSNTIDSTTTELPLTMSLPSSGLWVLNIYVNEKYYDQFVI 171
Cdd:pfam16167  81 ESSEPTWTTSNTIDSTTNELPLTMSLPSSGLWLLNIYVNEKYYDQFVI 128
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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