NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446650618|ref|WP_000727964|]
View 

MULTISPECIES: cytochrome c551 [Bacillus]

Protein Classification

c-type cytochrome( domain architecture ID 10601782)

c-type cytochrome is an electron carrier protein that contains one or more heme groups; such as Pseudomonas putida 4-cresol dehydrogenase [hydroxylating] cytochrome c subunit that binds 1 heme c group per subunit

CATH:  1.10.760.10
Gene Ontology:  GO:0020037|GO:0009055|GO:0046872
PubMed:  12594933|10647174|18568041|10395550|31252007|22723177
SCOP:  3000815

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
34-103 1.74e-11

Cytochrome C oxidase, cbb3-type, subunit III;


:

Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 54.72  E-value: 1.74e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446650618   34 ASTDSAEQIYQKSCIGCHAKdlsGATGPDLRkvGQKYDAADIEKIIEKGRGSMSP--GIIQGEDAKKVAEWL 103
Cdd:pfam13442   1 AAAAAGEALYAANCASCHGT---GGAGPSLA--GRALPPEALVDIIRNGKGAMPAfgGDLSDEELEALAAYL 67
 
Name Accession Description Interval E-value
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
34-103 1.74e-11

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 54.72  E-value: 1.74e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446650618   34 ASTDSAEQIYQKSCIGCHAKdlsGATGPDLRkvGQKYDAADIEKIIEKGRGSMSP--GIIQGEDAKKVAEWL 103
Cdd:pfam13442   1 AAAAAGEALYAANCASCHGT---GGAGPSLA--GRALPPEALVDIIRNGKGAMPAfgGDLSDEELEALAAYL 67
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
27-104 2.51e-10

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 54.18  E-value: 2.51e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446650618  27 SKPSKQSASTDSAEQIYQKSCIGCHAKDLSGATG--PDLRKV-GQKYDAADIEKIIEKGR--GSMSP--GIIQGEDAKKV 99
Cdd:COG2010   80 DAPAADAEALARGKALYEQNCAACHGADGKGGLGaaPNLTDDaLYGGDPEALVETILNGRpgGAMPAfgGQLSDEEIAAL 159


                 ....*
gi 446650618 100 AEWLA 104
Cdd:COG2010  160 AAYLR 164
 
Name Accession Description Interval E-value
Cytochrome_CBB3 pfam13442
Cytochrome C oxidase, cbb3-type, subunit III;
34-103 1.74e-11

Cytochrome C oxidase, cbb3-type, subunit III;


Pssm-ID: 463879 [Multi-domain]  Cd Length: 67  Bit Score: 54.72  E-value: 1.74e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446650618   34 ASTDSAEQIYQKSCIGCHAKdlsGATGPDLRkvGQKYDAADIEKIIEKGRGSMSP--GIIQGEDAKKVAEWL 103
Cdd:pfam13442   1 AAAAAGEALYAANCASCHGT---GGAGPSLA--GRALPPEALVDIIRNGKGAMPAfgGDLSDEELEALAAYL 67
CccA COG2010
Cytochrome c, mono- and diheme variants [Energy production and conversion];
27-104 2.51e-10

Cytochrome c, mono- and diheme variants [Energy production and conversion];


Pssm-ID: 441613 [Multi-domain]  Cd Length: 169  Bit Score: 54.18  E-value: 2.51e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446650618  27 SKPSKQSASTDSAEQIYQKSCIGCHAKDLSGATG--PDLRKV-GQKYDAADIEKIIEKGR--GSMSP--GIIQGEDAKKV 99
Cdd:COG2010   80 DAPAADAEALARGKALYEQNCAACHGADGKGGLGaaPNLTDDaLYGGDPEALVETILNGRpgGAMPAfgGQLSDEEIAAL 159


                 ....*
gi 446650618 100 AEWLA 104
Cdd:COG2010  160 AAYLR 164
CytC5 COG3245
Cytochrome c5 [Energy production and conversion];
1-82 3.91e-06

Cytochrome c5 [Energy production and conversion];


Pssm-ID: 442476 [Multi-domain]  Cd Length: 108  Bit Score: 41.97  E-value: 3.91e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446650618   1 MKKKLLAIALGTSVVFALGACGNKEESKPskqsASTDSAEQIYQKSCIGCHAKDLSGAtgPdlrKVGqkyDAADIEKIIE 80
Cdd:COG3245    1 MKKSLLAALALALRIAPVGAVALAAAAAA----AAARSGEAVYNATCAACHATGVAGA--P---KLG---DKAAWAPRIA 68


                 ..
gi 446650618  81 KG 82
Cdd:COG3245   69 KG 70
CytC552 COG4654
Cytochrome c551/c552 [Energy production and conversion];
33-107 9.95e-06

Cytochrome c551/c552 [Energy production and conversion];


Pssm-ID: 443692 [Multi-domain]  Cd Length: 88  Bit Score: 40.66  E-value: 9.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446650618  33 SASTDSAEQIYQKS-CIGCHAKDlSGATGPDLRKVGQKY--DAADIEKIIEK---------GRGSMSP-GIIQGEDAKKV 99
Cdd:COG4654    1 AADAAAGKALAKKSgCLACHAVD-KKLVGPSYKDVAKKYkgKADAVAKLAKKikkggsgvwGDVPMPPhPQLSDAEAKAL 79


                 ....*...
gi 446650618 100 AEWLAEHK 107
Cdd:COG4654   80 VKWILSLK 87
Cytochrom_C pfam00034
Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and ...
 41-107 1.46e-04

Cytochrome c; The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.


Pssm-ID: 459641 [Multi-domain]  Cd Length: 89  Bit Score: 37.52  E-value: 1.46e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446650618   41 QIYQKSCIGCHAKDLSGA--TGPDLRKVGQKYDAADIEKIIEKGRGSMSPGIIQG----------------EDAKKVAEW 102
Cdd:pfam00034   5 KLFAANCAACHGVNGEGAgaGGPDLAGLAARYPGDALGAIRENKHAIGGGGVDRAggppgtgmpafdgltdEEIADLVAY 84


                  ....*
gi 446650618  103 LAEHK 107
Cdd:pfam00034  85 LLSLS 89
Cyc7 COG3474
Cytochrome c2 [Energy production and conversion];
40-67 8.41e-03

Cytochrome c2 [Energy production and conversion];


Pssm-ID: 442697 [Multi-domain]  Cd Length: 101  Bit Score: 32.93  E-value: 8.41e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 446650618  40 EQIYQKSCIGCHA--KDLSGATGPDL-----RKVG 67
Cdd:COG3474    7 EKLFNRKCAACHSvdGGAGNRVGPNLngvvgRKAG 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH