NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446657382|ref|WP_000734728|]
View 

MULTISPECIES: quorum-sensing peptide PapR [Bacillus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Bacillus_PapR pfam05968
Bacillus PapR protein; This family consists of the Bacillus species specific PapR protein. The ...
 1-48 2.72e-24

Bacillus PapR protein; This family consists of the Bacillus species specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific.


:

Pssm-ID: 428697  Cd Length: 48  Bit Score: 84.33  E-value: 2.72e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446657382   1 MKKLLIGSLLTLAMAWGISLGDTALEKNQVISHNDQEVQLASDVPFEY 48
Cdd:pfam05968  1 MKKLLIGSLLTLAMAWGISLGDTALEKNHIISHNDQEVQLAKDLPFEY 48
 
Name Accession Description Interval E-value
Bacillus_PapR pfam05968
Bacillus PapR protein; This family consists of the Bacillus species specific PapR protein. The ...
 1-48 2.72e-24

Bacillus PapR protein; This family consists of the Bacillus species specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific.


Pssm-ID: 428697  Cd Length: 48  Bit Score: 84.33  E-value: 2.72e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446657382   1 MKKLLIGSLLTLAMAWGISLGDTALEKNQVISHNDQEVQLASDVPFEY 48
Cdd:pfam05968  1 MKKLLIGSLLTLAMAWGISLGDTALEKNHIISHNDQEVQLAKDLPFEY 48
 
Name Accession Description Interval E-value
Bacillus_PapR pfam05968
Bacillus PapR protein; This family consists of the Bacillus species specific PapR protein. The ...
 1-48 2.72e-24

Bacillus PapR protein; This family consists of the Bacillus species specific PapR protein. The papR gene belongs to the PlcR regulon and is located 70 bp downstream from plcR. It encodes a 48-amino-acid peptide. Disruption of the papR gene abolishes expression of the PlcR regulon, resulting in a large decrease in haemolysis and virulence in insect larvae. A processed form of PapR activates the PlcR regulon by allowing PlcR to bind to its DNA target. This activating mechanism is strain specific.


Pssm-ID: 428697  Cd Length: 48  Bit Score: 84.33  E-value: 2.72e-24
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 446657382   1 MKKLLIGSLLTLAMAWGISLGDTALEKNQVISHNDQEVQLASDVPFEY 48
Cdd:pfam05968  1 MKKLLIGSLLTLAMAWGISLGDTALEKNHIISHNDQEVQLAKDLPFEY 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH