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Conserved domains on  [gi|446660707|ref|WP_000738053|]
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MULTISPECIES: YpfB family protein [Bacillus]

Protein Classification

YpfB family protein( domain architecture ID 13879678)

YpfB family protein is a DUF5359 domain-containing protein; similar to Bacillus subtilis protein YpfB

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF5359 pfam17313
Family of unknown function (DUF5359); This is a family of unknown function found in Bacillales. ...
 1-56 2.78e-16

Family of unknown function (DUF5359); This is a family of unknown function found in Bacillales. Most of the family members are predicted to have one trans-membrane region.


:

Pssm-ID: 435856  Cd Length: 56  Bit Score: 64.55  E-value: 2.78e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446660707   1 MKKMERIFIRILIIQFICLCVVQLLFIHKSSVKYLSKIVYYEGVMVKNKTKILQVN 56
Cdd:pfam17313  1 MKTVERILIKLVIIQFIFLLIAQLLFHYLDAAPYLSKLTQYEGVNKNNFTEIIETF 56
 
Name Accession Description Interval E-value
DUF5359 pfam17313
Family of unknown function (DUF5359); This is a family of unknown function found in Bacillales. ...
 1-56 2.78e-16

Family of unknown function (DUF5359); This is a family of unknown function found in Bacillales. Most of the family members are predicted to have one trans-membrane region.


Pssm-ID: 435856  Cd Length: 56  Bit Score: 64.55  E-value: 2.78e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446660707   1 MKKMERIFIRILIIQFICLCVVQLLFIHKSSVKYLSKIVYYEGVMVKNKTKILQVN 56
Cdd:pfam17313  1 MKTVERILIKLVIIQFIFLLIAQLLFHYLDAAPYLSKLTQYEGVNKNNFTEIIETF 56
 
Name Accession Description Interval E-value
DUF5359 pfam17313
Family of unknown function (DUF5359); This is a family of unknown function found in Bacillales. ...
 1-56 2.78e-16

Family of unknown function (DUF5359); This is a family of unknown function found in Bacillales. Most of the family members are predicted to have one trans-membrane region.


Pssm-ID: 435856  Cd Length: 56  Bit Score: 64.55  E-value: 2.78e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 446660707   1 MKKMERIFIRILIIQFICLCVVQLLFIHKSSVKYLSKIVYYEGVMVKNKTKILQVN 56
Cdd:pfam17313  1 MKTVERILIKLVIIQFIFLLIAQLLFHYLDAAPYLSKLTQYEGVNKNNFTEIIETF 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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