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Conserved domains on  [gi|446679437|ref|WP_000756783|]
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MULTISPECIES: fimbrial protein [Salmonella]

Protein Classification

fimbrial protein( domain architecture ID 10015019)

fimbrial protein similar to the type-1 fimbrial major subunit FimA, which is transported to the outer membrane by the lipoprotein sorting system, and a mature or processed FimA protein on the outer membrane is autopolymerized to form Fim fimbriae

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK15239 PRK15239
putative fimbrial protein StaA; Provisional
 1-197 6.72e-107

putative fimbrial protein StaA; Provisional


:

Pssm-ID: 185152  Cd Length: 197  Bit Score: 304.73  E-value: 6.72e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446679437   1 MKKVLLATAVFMALGSSSVMAVEGGRINFEGLVSAETCKKVVSSAVGNSNIDGTVTLKTAHVSDVTAEVQNSTAGVNAED 80
Cdd:PRK15239   1 MKKVLLATAVFMALGSSSVMAVEGGRINFEGLVSAETCKKVVSSAVGNSNIDGTVTLKTAHVSDVTAEVQNSTAGVNAED 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446679437  81 FSIIIDCSDAGAGLVKSHLTMSSSFSNTKGTLDNDETLTRSGIEAAKAVDIAVHHVDDANALSLVKINDPSNTMEESFTN 160
Cdd:PRK15239  81 FSIIIDCSDAGAGLVKSHLTMSSSFSNTKGTLDNDETLTRSGIEAAKAVDIAVHHVDDANALSLVKINDPSNTMEESFTN 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 446679437 161 GIATYNFKASYVKSSDAGASVTTGLVSTNAIYTFTYE 197
Cdd:PRK15239 161 GIATYNFKASYVKSSDAGASVTTGLVSTNAIYTFTYE 197
 
Name Accession Description Interval E-value
PRK15239 PRK15239
putative fimbrial protein StaA; Provisional
 1-197 6.72e-107

putative fimbrial protein StaA; Provisional


Pssm-ID: 185152  Cd Length: 197  Bit Score: 304.73  E-value: 6.72e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446679437   1 MKKVLLATAVFMALGSSSVMAVEGGRINFEGLVSAETCKKVVSSAVGNSNIDGTVTLKTAHVSDVTAEVQNSTAGVNAED 80
Cdd:PRK15239   1 MKKVLLATAVFMALGSSSVMAVEGGRINFEGLVSAETCKKVVSSAVGNSNIDGTVTLKTAHVSDVTAEVQNSTAGVNAED 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446679437  81 FSIIIDCSDAGAGLVKSHLTMSSSFSNTKGTLDNDETLTRSGIEAAKAVDIAVHHVDDANALSLVKINDPSNTMEESFTN 160
Cdd:PRK15239  81 FSIIIDCSDAGAGLVKSHLTMSSSFSNTKGTLDNDETLTRSGIEAAKAVDIAVHHVDDANALSLVKINDPSNTMEESFTN 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 446679437 161 GIATYNFKASYVKSSDAGASVTTGLVSTNAIYTFTYE 197
Cdd:PRK15239 161 GIATYNFKASYVKSSDAGASVTTGLVSTNAIYTFTYE 197
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-197 2.42e-14

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 67.76  E-value: 2.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446679437   1 MKKVLLATAVFMALGSSSVMAvEGGRINFEGLVSAETCkkvvssAVGNSNIDGTVTLKTAHVSDVTAevQNSTAGvnAED 80
Cdd:COG3539    1 MKKLLLALLLALALSAAAAAA-ADGTVNFTGTVVAPTC------TINTGSKDQTVDLGTVSTSDLNG--VGSTSG--PKP 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446679437  81 FSI-IIDCSDAGAGLVKSHLTmSSSFSNTKGTLDNDETLTRSGieaakaVDIAVHHVDDanalSLVKINDPSNTMEESfT 159
Cdd:COG3539   70 FSIkLTNCDAGTSNSVKVTFT-GTADSANPGLLANTGSGGASG------VGIQLLDSDG----TPIPLGTPSSAVTLT-S 137

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 446679437 160 NGIATYNFKASYVKSsdaGASVTTGLVSTNAIYTFTYE 197
Cdd:COG3539  138 NGSATLPFYARYVAT---GATVTAGSFNATATFTIDYQ 172
 
Name Accession Description Interval E-value
PRK15239 PRK15239
putative fimbrial protein StaA; Provisional
 1-197 6.72e-107

putative fimbrial protein StaA; Provisional


Pssm-ID: 185152  Cd Length: 197  Bit Score: 304.73  E-value: 6.72e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446679437   1 MKKVLLATAVFMALGSSSVMAVEGGRINFEGLVSAETCKKVVSSAVGNSNIDGTVTLKTAHVSDVTAEVQNSTAGVNAED 80
Cdd:PRK15239   1 MKKVLLATAVFMALGSSSVMAVEGGRINFEGLVSAETCKKVVSSAVGNSNIDGTVTLKTAHVSDVTAEVQNSTAGVNAED 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446679437  81 FSIIIDCSDAGAGLVKSHLTMSSSFSNTKGTLDNDETLTRSGIEAAKAVDIAVHHVDDANALSLVKINDPSNTMEESFTN 160
Cdd:PRK15239  81 FSIIIDCSDAGAGLVKSHLTMSSSFSNTKGTLDNDETLTRSGIEAAKAVDIAVHHVDDANALSLVKINDPSNTMEESFTN 160

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 446679437 161 GIATYNFKASYVKSSDAGASVTTGLVSTNAIYTFTYE 197
Cdd:PRK15239 161 GIATYNFKASYVKSSDAGASVTTGLVSTNAIYTFTYE 197
FimA COG3539
Pilin (type 1 fimbrial protein) [Cell motility];
1-197 2.42e-14

Pilin (type 1 fimbrial protein) [Cell motility];


Pssm-ID: 442760 [Multi-domain]  Cd Length: 172  Bit Score: 67.76  E-value: 2.42e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446679437   1 MKKVLLATAVFMALGSSSVMAvEGGRINFEGLVSAETCkkvvssAVGNSNIDGTVTLKTAHVSDVTAevQNSTAGvnAED 80
Cdd:COG3539    1 MKKLLLALLLALALSAAAAAA-ADGTVNFTGTVVAPTC------TINTGSKDQTVDLGTVSTSDLNG--VGSTSG--PKP 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446679437  81 FSI-IIDCSDAGAGLVKSHLTmSSSFSNTKGTLDNDETLTRSGieaakaVDIAVHHVDDanalSLVKINDPSNTMEESfT 159
Cdd:COG3539   70 FSIkLTNCDAGTSNSVKVTFT-GTADSANPGLLANTGSGGASG------VGIQLLDSDG----TPIPLGTPSSAVTLT-S 137

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 446679437 160 NGIATYNFKASYVKSsdaGASVTTGLVSTNAIYTFTYE 197
Cdd:COG3539  138 NGSATLPFYARYVAT---GATVTAGSFNATATFTIDYQ 172
PRK15307 PRK15307
major fimbrial protein StkA; Provisional
 1-197 1.40e-10

major fimbrial protein StkA; Provisional


Pssm-ID: 185207  Cd Length: 201  Bit Score: 58.13  E-value: 1.40e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446679437   1 MKKVLLATAVFMALGSSSVMAVEG--GRINFEGLVSAETCKKVVSSAVGNSNIDGTVTLKTAHVSDVTAEVQNSTaGVNA 78
Cdd:PRK15307   3 LKKYGLAAAVAMTLSASSAMAADPdtGTITFHGLVTNNTCNISLDNKIDQDGNDFDITLPTVFVKDFATALGVNS-TLGE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446679437  79 EDFSIII-DCSDAGAGLVKSHL-TMSSSFSNTKGTLDNDETLTRSgieaAKAVDIAVHHvDDANALSLVKINDPSNTMEE 156
Cdd:PRK15307  82 KQFTLNLsECDNATLKDASAQFnSWGGSSATSGGLLVPPANLQGS----ATNVNLVLAN-NGNTATDLIKIDQPNNTQKA 156

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 446679437 157 S-FTNGIATYNFKASYVKSSDAGAS---VTTGLVSTNAIYTFTYE 197
Cdd:PRK15307 157 TiSTDGTGDLFYRVAYTQGQKWNADtspVTSGTVQAQVAFTMIYN 201
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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