|
Name |
Accession |
Description |
Interval |
E-value |
| ARO8 |
COG1167 |
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain ... |
1-468 |
0e+00 |
|
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain is part of the Pathway/BioSystem: Lysine biosynthesis
Pssm-ID: 440781 [Multi-domain] Cd Length: 471 Bit Score: 522.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 1 MKKYQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVAPHPVCRSVATAAH 80
Cdd:COG1167 11 GPLYLQLADALREAILSGRLPPGDRLPSSRELAAQLGVSRSTVVRAYEELEAEGLIESRPGSGTFVAARLPAPAPAPRAA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 81 VIRDEAVdintyIFEMLQASRDtsVVPFASAFPDPRLFPLPQLNRSLAQVSKTATAMSVIENLPPGNAELRYAIARRYAQ 160
Cdd:COG1167 91 AAVAAPA-----LRRLLEAAPG--VIDLGSGAPDPDLFPLAALRRALRRALRRLPPALLGYGDPQGLPELREAIARYLAR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 161 QGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALSIPTDvKEGIDLMALEQALQEYPV 240
Cdd:COG1167 164 RGVPASPDQILITSGAQQALDLALRALLRPGDTVAVESPTYPGALAALRAAGLRLVPVPVD-EDGLDLDALEAALRRHRP 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 241 KACWLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAWDRDDTVLHCSSFSKCLVPGFRI 320
Cdd:COG1167 243 RAVYVTPSHQNPTGATMSLERRRALLELARRHGVPIIEDDYDSELRYDGRPPPPLAALDAPGRVIYIGSFSKTLAPGLRL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 321 GW-VAGGSHARQIQRLQLMSTLSTSSPMQLALVDYLSTRRYDAHLRRLRRQLAERKQQAWQTLLRHLPAEVKIHHNDSGY 399
Cdd:COG1167 323 GYlVAPGRLIERLARLKRATDLGTSPLTQLALAEFLESGHYDRHLRRLRREYRARRDLLLAALARHLPDGLRVTGPPGGL 402
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446683342 400 FLWLELPEQLDAGELSAKALEHLISIAPGKMFSTSGAWTRFFRFNTAWHWGEREEQAVKQLGSLIREML 468
Cdd:COG1167 403 HLWLELPEGVDAEALAAAALARGILVAPGSAFSADGPPRNGLRLGFGAPSEEELEEALRRLAELLRELA 471
|
|
| AAT_like |
cd00609 |
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
106-446 |
1.57e-71 |
|
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.
Pssm-ID: 99734 [Multi-domain] Cd Length: 350 Bit Score: 230.31 E-value: 1.57e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 106 VPFASAFPDPRLFPLPQLNRSLAQVSKTATAMSvienLPPGNAELRYAIARRYAQQ-GITVSPDEIVITAGALEALNLSL 184
Cdd:cd00609 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYY----PDPGLPELREAIAEWLGRRgGVDVPPEEIVVTNGAQEALSLLL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 185 QAVTAPGDWVVVENPCFYGALQALERLRLKALSIPTDVKEGIDLM-ALEQALQEYPVKACWLmTNSQNPLGFTLSAEKKA 263
Cdd:cd00609 77 RALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLLDlELLEAAKTPKTKLLYL-NNPNNPTGAVLSEEELE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 264 RLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAWDRDDTVLHCSSFSKCL-VPGFRIGWVAGGSH--ARQIQRLQLMST 340
Cdd:cd00609 156 ELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFgLPGLRIGYLIAPPEelLERLKKLLPYTT 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 341 LSTSSPMQLALVDYLSTRryDAHLRRLRRQLAERKQQAWQTLLRHLPaeVKIHHNDSGYFLWLELPEQLDAGELSAKALE 420
Cdd:cd00609 236 SGPSTLSQAAAAAALDDG--EEHLEELRERYRRRRDALLEALKELGP--LVVVKPSGGFFLWLDLPEGDDEEFLERLLLE 311
|
330 340
....*....|....*....|....*.
gi 446683342 421 HLISIAPGKMFSTSGAwtRFFRFNTA 446
Cdd:cd00609 312 AGVVVRPGSAFGEGGE--GFVRLSFA 335
|
|
| AspB |
COG0436 |
Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; ... |
145-466 |
1.21e-48 |
|
Aspartate/methionine/tyrosine aminotransferase [Amino acid transport and metabolism]; Aspartate/methionine/tyrosine aminotransferase is part of the Pathway/BioSystem: Isoleucine, leucine, valine biosynthesis
Pssm-ID: 440205 [Multi-domain] Cd Length: 387 Bit Score: 171.47 E-value: 1.21e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 145 PGNAELRYAIARRYAQ-QGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCF--YGAlqALERLRLKALSIPTD 221
Cdd:COG0436 67 AGIPELREAIAAYYKRrYGVDLDPDEILVTNGAKEALALALLALLNPGDEVLVPDPGYpsYRA--AVRLAGGKPVPVPLD 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 222 VKEG--IDLMALEQALQEypvKACWLMTNS-QNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPL-PAKA 297
Cdd:COG0436 145 EENGflPDPEALEAAITP---RTKAIVLNSpNNPTGAVYSREELEALAELAREHDLLVISDEIYEELVYDGAEHVsILSL 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 298 WDRDDTVLHCSSFSKCL-VPGFRIGWVAGGSH-ARQIQRLQLMSTLSTSSPMQLALVDYLSTrrYDAHLRRLRRQLAERK 375
Cdd:COG0436 222 PGLKDRTIVINSFSKSYaMTGWRIGYAVGPPElIAALLKLQSNLTSCAPTPAQYAAAAALEG--PQDYVEEMRAEYRRRR 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 376 QQAWQTLLRhlpAEVKIHHNDSGYFLWLELPE-QLDAGELSAKAL-EHLISIAPGKMFSTSGAwtRFFRFNTAwHWGERE 453
Cdd:COG0436 300 DLLVEGLNE---IGLSVVKPEGAFYLFADVPElGLDSEEFAERLLeEAGVAVVPGSAFGPAGE--GYVRISYA-TSEERL 373
|
330
....*....|...
gi 446683342 454 EQAVKQLGSLIRE 466
Cdd:COG0436 374 EEALERLARFLER 386
|
|
| PRK15481 |
PRK15481 |
transcriptional regulatory protein PtsJ; Provisional |
9-411 |
1.76e-36 |
|
transcriptional regulatory protein PtsJ; Provisional
Pssm-ID: 185378 [Multi-domain] Cd Length: 431 Bit Score: 139.41 E-value: 1.76e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 9 EQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYV--APHPVCRSVATAAHVIRDea 86
Cdd:PRK15481 12 DSIRQLIQAGRLRPGDSLPPVRELASELGVNRNTVAAAYKRLVTAGLAQSQGRNGTVIrgSPSPVALEGGDPGTPLHD-- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 87 vdintyifemlqasrdtsvvpFASAFPDPRLfpLPQLNRSLAQVSKTATAMSVienlPPGNAELRyAIARRYAQQGITVs 166
Cdd:PRK15481 90 ---------------------LAGGNPDPQR--LPDLSRYFARLSRTPRLYGD----APVSPELH-AWAARWLRDDCPV- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 167 PDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALSIPTDVkEGIDLMALEQALQEyPVKACWLM 246
Cdd:PRK15481 141 AFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDA-EGMQPEKLERALAQ-GARAVILT 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 247 TNSQNPLGFTLSAEKKARLVALLTHH-NVMLIEDDVYSELYFGR-EKPLPAKA--WdrddTVLHcsSFSKCLVPGFRIGW 322
Cdd:PRK15481 219 PRAHNPTGCSLSARRAAALRNLLARYpQVLVIIDDHFALLSSSPyHSVIPQTTqrW----ALIR--SVSKALGPDLRLAF 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 323 VAGGSHARQIQRLQLMS-TLSTSSPMQLALVDYLSTRRYDAHLRRLRRQLAERKQQAWQTLLRHlpaevKIHHNDS--GY 399
Cdd:PRK15481 293 VASDSATSARLRLRLNSgTQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRRQKLARALQQY-----GIAIPSPgdGL 367
|
410
....*....|..
gi 446683342 400 FLWLELPEQLDA 411
Cdd:PRK15481 368 NLWLPLDTDSQA 379
|
|
| PRK06108 |
PRK06108 |
pyridoxal phosphate-dependent aminotransferase; |
146-442 |
4.17e-31 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180404 Cd Length: 382 Bit Score: 123.51 E-value: 4.17e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQQ-GITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALSIPTDVKE 224
Cdd:PRK06108 62 GIPELREALARYVSRLhGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAPKILGARVVCVPLDFGG 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 225 G---IDLMALEQALQEypvKACWLMTNS-QNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPA--KAW 298
Cdd:PRK06108 142 GgwtLDLDRLLAAITP---RTRALFINSpNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSflDIA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 299 DRDDTVLHCSSFSKC-LVPGFRIGW-VAGGSHARQIQRLQLMSTLSTSSPMQLALVDYLS-----TRRYDAHLRRLRRQL 371
Cdd:PRK06108 219 EPDDRIIFVNSFSKNwAMTGWRLGWlVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDegedfVAELVARLRRSRDHL 298
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446683342 372 AErkqqawqtLLRHLPAeVKIHHNDSGYFLWLELPEQLDAGELsAKAL--EHLISIAPGKMFSTSGAwtRFFR 442
Cdd:PRK06108 299 VD--------ALRALPG-VEVAKPDGAMYAFFRIPGVTDSLAL-AKRLvdEAGLGLAPGTAFGPGGE--GFLR 359
|
|
| Aminotran_1_2 |
pfam00155 |
Aminotransferase class I and II; |
114-448 |
4.14e-28 |
|
Aminotransferase class I and II;
Pssm-ID: 395103 [Multi-domain] Cd Length: 351 Bit Score: 114.32 E-value: 4.14e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 114 DPRLFPLPqlnrSLAQVSKTATAMSVIENLPP--GNAELRYAIARRY-AQQGITVSP-DEIVITAGALEALNLSLQAVTA 189
Cdd:pfam00155 10 EYLGDTLP----AVAKAEKDALAGGTRNLYGPtdGHPELREALAKFLgRSPVLKLDReAAVVFGSGAGANIEALIFLLAN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 190 PGDWVVVENPCFYGALQALERLRLKALSIPTDVKEG--IDLMALEQALQEypvKACWLMTNS-QNPLGFTLSAEKKARLV 266
Cdd:pfam00155 86 PGDAILVPAPTYASYIRIARLAGGEVVRYPLYDSNDfhLDFDALEAALKE---KPKVVLHTSpHNPTGTVATLEELEKLL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 267 ALLTHHNVMLIEDDVYSELYFGREKPLPAKAW-DRDDTVLHCSSFSKCL-VPGFRIGWVAGGSHARQIQRlQLMSTLSTS 344
Cdd:pfam00155 163 DLAKEHNILLLVDEAYAGFVFGSPDAVATRALlAEGPNLLVVGSFSKAFgLAGWRVGYILGNAAVISQLR-KLARPFYSS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 345 SPMQLALVDYLSTR-RYDAHLRRLRRQLAERKQQawqtLLRHLPAEVKIH-HNDSGYFLWLELPEqLDAGELSAKAL-EH 421
Cdd:pfam00155 242 THLQAAAAAALSDPlLVASELEEMRQRIKERRDY----LRDGLQAAGLSVlPSQAGFFLLTGLDP-ETAKELAQVLLeEV 316
|
330 340
....*....|....*....|....*..
gi 446683342 422 LISIAPGKMFSTSGawtrFFRFNTAWH 448
Cdd:pfam00155 317 GVYVTPGSSPGVPG----WLRITVAGG 339
|
|
| PRK06836 |
PRK06836 |
pyridoxal phosphate-dependent aminotransferase; |
145-324 |
2.52e-24 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180720 Cd Length: 394 Bit Score: 104.50 E-value: 2.52e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 145 PGNAELRYAIARRYA-QQGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCF--YGALqaLERLRLKALSIPTD 221
Cdd:PRK06836 73 AGYPEVREAIAESLNrRFGTPLTADHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFveYRFY--VDNHGGKLVVVPTD 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 222 VKE-GIDLMALEQALQEyPVKAcwLMTNS-QNPLGFTLSAEKKARLVALL------THHNVMLIEDDVYSEL-YFGREKP 292
Cdd:PRK06836 151 TDTfQPDLDALEAAITP-KTKA--VIINSpNNPTGVVYSEETLKALAALLeekskeYGRPIYLISDEPYREIvYDGAEVP 227
|
170 180 190
....*....|....*....|....*....|...
gi 446683342 293 LPAKAWDRddTVLhCSSFSKCL-VPGFRIGWVA 324
Cdd:PRK06836 228 YIFKYYDN--SIV-VYSFSKSLsLPGERIGYIA 257
|
|
| PRK07550 |
PRK07550 |
aminotransferase; |
119-443 |
1.58e-20 |
|
aminotransferase;
Pssm-ID: 181026 [Multi-domain] Cd Length: 386 Bit Score: 93.10 E-value: 1.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 119 PLPQLNRSLAQV--SKTATAMSVIEnlppGNAELRYAIARRYAQQ-GITVSPDEIVITAGALEALNLSLQAVTAPGDWVV 195
Cdd:PRK07550 43 PPPELLRALAEAaaDPAAHLYGPVE----GLPELREAYAAHYSRLyGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVI 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 196 VENPCFYGALQALERLRLKALSIPTDVKEGI--DLMALEQALQEyPVKACWLMTNSqNPLGFTLSAEKKARLVALLTHHN 273
Cdd:PRK07550 119 LPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLlpDPAAAEALITP-RTRAIALVTPN-NPTGVVYPPELLHELYDLARRHG 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 274 VMLIEDDVYSELYFGREKP---LPAKAWdrDDTVLHCSSFSK--CLvPGFRIGWVAgGSHARQIQRLQLMSTLSTSSPM- 347
Cdd:PRK07550 197 IALILDETYRDFDSGGGAPhdlFADPDW--DDTLVHLYSFSKsyAL-TGHRVGAVV-ASPARIAEIEKFMDTVAICAPRi 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 348 -QLA-------LVDYLSTRRYDAHLRR--LRRQLAERKQqaWQTLlrhlpaevkihhnDSG-YFLWLELPEQLDAGELSA 416
Cdd:PRK07550 273 gQIAvawglpnLADWRAGNRAEIARRRdaFRAVFARLPG--WELL-------------ASGaYFAYVRHPFPDRPSREVA 337
|
330 340
....*....|....*....|....*....
gi 446683342 417 KAL--EHLISIAPGKMFSTSGAwtRFFRF 443
Cdd:PRK07550 338 RRLakEAGILCLPGTMFGPGQE--GYLRL 364
|
|
| PRK05764 |
PRK05764 |
aspartate aminotransferase; Provisional |
145-376 |
4.18e-20 |
|
aspartate aminotransferase; Provisional
Pssm-ID: 235596 Cd Length: 393 Bit Score: 91.73 E-value: 4.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 145 PGNAELRYAIARRYAQQ-GITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCF--YGalqalERLRL---KALSI 218
Cdd:PRK05764 68 AGIPELREAIAAKLKRDnGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWvsYP-----EMVKLaggVPVFV 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 219 PTDVKEG--IDLMALEQALQEyPVKacWLMTNS-QNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREK--PL 293
Cdd:PRK05764 143 PTGEENGfkLTVEQLEAAITP-KTK--ALILNSpSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEftSI 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 294 PAKAWD-RDDTVLhCSSFSKCL-VPGFRIGWVAGGSH-ARQIQRLQLMSTLSTSSPMQLALVDYLSTRryDAHLRRLRRQ 370
Cdd:PRK05764 220 ASLSPElRDRTIT-VNGFSKAYaMTGWRLGYAAGPKElIKAMSKLQSHSTSNPTSIAQYAAVAALNGP--QDEVEEMRQA 296
|
....*.
gi 446683342 371 LAERKQ 376
Cdd:PRK05764 297 FEERRD 302
|
|
| WHTH_GntR |
cd07377 |
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional ... |
2-67 |
5.95e-20 |
|
Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators; This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is presumed to result in a conformational change that regulates the DNA-binding affinity of the repressor. The GntR-like proteins bind as dimers, where each monomer recognizes a half-site of 2-fold symmetric DNA sequences.
Pssm-ID: 153418 [Multi-domain] Cd Length: 66 Bit Score: 83.27 E-value: 5.95e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446683342 2 KKYQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVA 67
Cdd:cd07377 1 PLYEQIADQLREAILSGELKPGDRLPSERELAEELGVSRTTVREALRELEAEGLVERRPGRGTFVA 66
|
|
| YhcF |
COG1725 |
DNA-binding transcriptional regulator YhcF, GntR family [Transcription]; |
4-89 |
1.37e-18 |
|
DNA-binding transcriptional regulator YhcF, GntR family [Transcription];
Pssm-ID: 441331 [Multi-domain] Cd Length: 114 Bit Score: 80.99 E-value: 1.37e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 4 YQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVAPHPVCRSVATAAHVIR 83
Cdd:COG1725 12 YEQIADQIKEAIASGELKPGDRLPSVRELAAELGVNPNTVAKAYRELEDEGLIETRRGKGTFVAEDARELLEERREEFLE 91
|
....*.
gi 446683342 84 DEAVDI 89
Cdd:COG1725 92 EALREL 97
|
|
| PRK07777 |
PRK07777 |
putative succinyldiaminopimelate transaminase DapC; |
91-401 |
1.44e-18 |
|
putative succinyldiaminopimelate transaminase DapC;
Pssm-ID: 236095 [Multi-domain] Cd Length: 387 Bit Score: 87.40 E-value: 1.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 91 TYIF-EMLQASRDTSVVPFASAFPD---PRlfplpqlnrSLAQVSKTATAMSVIENLP-PGNAELRYAIA----RRYaqq 161
Cdd:PRK07777 11 TTIFaEMSALAVRTGAVNLGQGFPDedgPP---------EMLEAAQEAIAGGVNQYPPgPGIPELRAAIAaqrrRRY--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 162 GITVSPD-EIVITAGALEALNLSLQAVTAPGDWVVVENPCF--YGALQALERLRLKALSI-PTDVKEGIDLMALEQALQE 237
Cdd:PRK07777 79 GLEYDPDtEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYdsYAAVIAMAGAHRVPVPLvPDGRGFALDLDALRAAVTP 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 238 ypvKACWLMTNS-QNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKA----WDRDDTVlhcSSFSK 312
Cdd:PRK07777 159 ---RTRALIVNSpHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATlpgmRERTVTI---SSAAK 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 313 CL-VPGFRIGWVAGGSH-ARQIQRLQLMSTLSTSSPMQLALVDYLSTRryDAHLRRLRRQLAERKQQAWQTLLRhlpAEV 390
Cdd:PRK07777 233 TFnVTGWKIGWACGPAPlIAAVRAAKQYLTYVGGAPFQPAVAHALDHE--DAWVAALRDSLQAKRDRLAAGLAE---AGF 307
|
330
....*....|.
gi 446683342 391 KIHHNDSGYFL 401
Cdd:PRK07777 308 EVHDSAGTYFL 318
|
|
| PRK07683 |
PRK07683 |
aminotransferase A; Validated |
113-382 |
2.18e-18 |
|
aminotransferase A; Validated
Pssm-ID: 236075 Cd Length: 387 Bit Score: 86.70 E-value: 2.18e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 113 PDprlFPLPQLNRSLAQVSKTATAMSVIENlpPGNAELRYAIARRYAQQ-GITVSPD-EIVITAGALEALNLSLQAVTAP 190
Cdd:PRK07683 38 PD---FPTPSHVKEAAKRAITENYTSYTHN--AGLLELRKAACNFVKDKyDLHYSPEsEIIVTIGASEAIDIAFRTILEP 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 191 GDWVVVENPcFYGALQALERL-RLKALSIPTDvKEGIDLMAleQALQEY--PVKACWLMTNSQNPLGFTLSAEKKARLVA 267
Cdd:PRK07683 113 GTEVILPAP-IYPGYEPIIRLcGAKPVFIDTR-STGFRLTA--EALENAitEKTRCVVLPYPSNPTGVTLSKEELQDIAD 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 268 LLTHHNVMLIEDDVYSELYFGREKPLPAKAWD-RDDT-VLHCSSFSKCLVpGFRIGWVAGGSH-ARQIQRLQLMSTLSTS 344
Cdd:PRK07683 189 VLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEmREKTiVINGLSKSHSMT-GWRIGFLFAPSYlAKHILKVHQYNVTCAS 267
|
250 260 270
....*....|....*....|....*....|....*...
gi 446683342 345 SPMQLALVDYLSTRRYDAHLrrLRRQLAERKQQAWQTL 382
Cdd:PRK07683 268 SISQYAALEALTAGKDDAKM--MRHQYKKRRDYVYNRL 303
|
|
| PRK08960 |
PRK08960 |
pyridoxal phosphate-dependent aminotransferase; |
146-350 |
3.43e-18 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 181595 Cd Length: 387 Bit Score: 86.26 E-value: 3.43e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQQ-GITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALSIPTDVke 224
Cdd:PRK08960 70 GLPALREAIAGFYAQRyGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFLRLVEGAAQLVPVGP-- 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 225 gidlmalEQALQEYP--VKACW-------LMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPlpa 295
Cdd:PRK08960 148 -------DSRYQLTPalVERHWnadtvgaLVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA--- 217
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 446683342 296 KAWDRDDTVLHCSSFSKCL-VPGFRIGW-VAGGSHARQIQRLQLMSTLSTSSPMQLA 350
Cdd:PRK08960 218 SVLEVDDDAFVLNSFSKYFgMTGWRLGWlVAPPAAVPELEKLAQNLYISASTPAQHA 274
|
|
| tyr_nico_aTase |
TIGR01265 |
tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal ... |
145-324 |
7.09e-18 |
|
tyrosine/nicotianamine family aminotransferase; This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Pssm-ID: 188123 Cd Length: 403 Bit Score: 85.47 E-value: 7.09e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 145 PGNAELRYAIARRYAQQGITV-SPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCF--YGALQALERLRLKALSIPTD 221
Cdd:TIGR01265 73 VGALAAREAVAEYLSSDLPGKlTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFplYDTRAAFSGLEVRLYDLLPE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 222 VKEGIDLMALEQALQEYPVkaCWLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAWDRD 301
Cdd:TIGR01265 153 KDWEIDLDGLESLADEKTV--AIVVINPSNPCGSVFSRDHLQKIAEVAEKLGIPIIADEIYGHMVFGDAPFIPMASFASI 230
|
170 180
....*....|....*....|....
gi 446683342 302 DTVLHCSSFSK-CLVPGFRIGWVA 324
Cdd:TIGR01265 231 VPVLSLGGISKrWVVPGWRLGWII 254
|
|
| PRK07682 |
PRK07682 |
aminotransferase; |
125-435 |
8.30e-18 |
|
aminotransferase;
Pssm-ID: 181082 [Multi-domain] Cd Length: 378 Bit Score: 84.79 E-value: 8.30e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 125 RSLAQ--VSKTATAmsvienlppGNAELRYAIARRYAQQ-GITVSPD-EIVITAGALEALNLSLQAVTAPGDWVVVENPC 200
Cdd:PRK07682 44 RSLEQgyTSYTANA---------GLLELRQEIAKYLKKRfAVSYDPNdEIIVTVGASQALDVAMRAIINPGDEVLIVEPS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 201 F--YGALQALErlRLKALSIPTDVKEGIDLMA--LEQALQEyPVKACWLMTNSqNPLGFTLSAEKKARLVALLTHHNVML 276
Cdd:PRK07682 115 FvsYAPLVTLA--GGVPVPVATTLENEFKVQPaqIEAAITA-KTKAILLCSPN-NPTGAVLNKSELEEIAVIVEKHDLIV 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 277 IEDDVYSEL-YFGREKPLPAKAWDRDDTVLhCSSFSKCL-VPGFRIGWVAGGSHARQ----IQRLQLMSTLSTSspmQLA 350
Cdd:PRK07682 191 LSDEIYAELtYDEAYTSFASIKGMRERTIL-ISGFSKGFaMTGWRLGFIAAPVYFSEamlkIHQYSMMCAPTMA---QFA 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 351 LVDYLSTRRYDAHlrRLRRQLAERKQQAWQTLlrhlpAEVKI--HHNDSGYFLWLELPEQLDAGELSAKAL--EHLISIA 426
Cdd:PRK07682 267 ALEALRAGNDDVI--RMRDSYRKRRNFFVTSF-----NEIGLtcHVPGGAFYAFPSISSTGLSSEEFAEQLllEEKVAVV 339
|
....*....
gi 446683342 427 PGKMFSTSG 435
Cdd:PRK07682 340 PGSVFGESG 348
|
|
| PRK07568 |
PRK07568 |
pyridoxal phosphate-dependent aminotransferase; |
146-324 |
9.24e-18 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 181036 Cd Length: 397 Bit Score: 84.90 E-value: 9.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQQGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPcFYGALQA-LERLRLKALSIPTDVKE 224
Cdd:PRK07568 67 GIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEP-FYANYNGfATSAGVKIVPVTTKIEE 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 225 GIDLMALEqALQEY--PVKACWLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAW-DRD 301
Cdd:PRK07568 146 GFHLPSKE-EIEKLitPKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLeGLE 224
|
170 180
....*....|....*....|....*..
gi 446683342 302 DTVLHCSSFSK----ClvpGFRIGWVA 324
Cdd:PRK07568 225 DRVIIIDSVSKrysaC---GARIGCLI 248
|
|
| tyr_amTase_E |
TIGR01264 |
tyrosine aminotransferase, eukaryotic; This model describes tyrosine aminotransferase as found ... |
146-323 |
2.32e-17 |
|
tyrosine aminotransferase, eukaryotic; This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. [Energy metabolism, Amino acids and amines]
Pssm-ID: 273529 [Multi-domain] Cd Length: 401 Bit Score: 83.68 E-value: 2.32e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQQGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENP--CFYGALQALERLRLKALSIPTDVK 223
Cdd:TIGR01264 74 GALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPgfPLYETLAESMGIEVKLYNLLPDKS 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 224 EGIDLMALEQALQEYpvKACWLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAWDRDDT 303
Cdd:TIGR01264 154 WEIDLKQLESLIDEK--TAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVP 231
|
170 180
....*....|....*....|.
gi 446683342 304 VLHCSSFSK-CLVPGFRIGWV 323
Cdd:TIGR01264 232 ILSCGGLAKrWLVPGWRLGWI 252
|
|
| PRK08912 |
PRK08912 |
aminotransferase; |
88-373 |
2.82e-17 |
|
aminotransferase;
Pssm-ID: 181580 Cd Length: 387 Bit Score: 83.49 E-value: 2.82e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 88 DINTYIFE-MLQASRDTSVVPFASAFPDPrlfPLPQLNRSlaqvsktATAMSVIE---NLPP--GNAELRYAIARRYAQ- 160
Cdd:PRK08912 10 DLPTTIFEvMSQLAREHGAINLGQGFPDD---PGPEDVRR-------AAADALLDgsnQYPPmmGLPELRQAVAAHYARf 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 161 QGITVSPD-EIVITAGALEALNLSLQAVTAPGDWVVVENPcFYGALQALERL-----RLKALSIPtdvKEGIDLMALEQA 234
Cdd:PRK08912 80 QGLDLDPEtEVMVTSGATEALAAALLALVEPGDEVVLFQP-LYDAYLPLIRRaggvpRLVRLEPP---HWRLPRAALAAA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 235 LQEyPVKACwLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFG--REKPLPAKAWDRDDTVLHCS---S 309
Cdd:PRK08912 156 FSP-RTKAV-LLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDgrRHIPLMTLPGMRERTVKIGSagkI 233
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446683342 310 FSkclVPGFRIGWV-AGGSHARQIQRLQLMSTLSTSSPMQLALV-------DYLSTRRydAHLRRLRRQLAE 373
Cdd:PRK08912 234 FS---LTGWKVGFVcAAPPLLRVLAKAHQFLTFTTPPNLQAAVAyglgkpdDYFEGMR--ADLARSRDRLAA 300
|
|
| PLN00175 |
PLN00175 |
aminotransferase family protein; Provisional |
146-376 |
1.11e-16 |
|
aminotransferase family protein; Provisional
Pssm-ID: 215089 [Multi-domain] Cd Length: 413 Bit Score: 81.83 E-value: 1.11e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQQ-GITVSPD-EIVITAGALEALNLSLQAVTAPGDWVVVENPcFYGALQAlerlrlkALSIPTDVK 223
Cdd:PLN00175 92 GVPELNSAIAERFKKDtGLVVDPEkEVTVTSGCTEAIAATILGLINPGDEVILFAP-FYDSYEA-------TLSMAGAKI 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 224 EGIDLMALEQALQEYPVKACW-------LMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREK----P 292
Cdd:PLN00175 164 KTVTLRPPDFAVPEDELKAAFtsktraiLINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHismaS 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 293 LPAkAWDRDDTVlhcSSFSKCL-VPGFRIGWVAGGSH-ARQIQRLQLMSTLSTSSPMQLALVDYLstRRYDAHLRRLRRQ 370
Cdd:PLN00175 244 LPG-MYERTVTM---NSLGKTFsLTGWKIGWAIAPPHlTWGVRQAHSFLTFATATPMQWAAVAAL--RAPESYYEELKRD 317
|
....*.
gi 446683342 371 LAERKQ 376
Cdd:PLN00175 318 YSAKKD 323
|
|
| PRK09082 |
PRK09082 |
methionine aminotransferase; Validated |
91-367 |
1.23e-16 |
|
methionine aminotransferase; Validated
Pssm-ID: 181642 [Multi-domain] Cd Length: 386 Bit Score: 81.50 E-value: 1.23e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 91 TYIF-EMLQASRDTSVVPFASAFPDprlFPLPQlnrslAQVSKTATAMSVIEN-LPP--GNAELRYAIARRYAQ-QGITV 165
Cdd:PRK09082 17 TTIFtVMSALAAEHGAINLSQGFPD---FDGPP-----YLVEALAYAMAAGHNqYPPmtGVAALREAIAAKTARlYGRQY 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 166 SPD-EIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALE----RLRLKALSIPTdvkEGIDLMALEQALQEypv 240
Cdd:PRK09082 89 DADsEITVTAGATEALFAAILALVRPGDEVIVFDPSYDSYAPAIElaggRAVRVALQPPD---FRVDWQRFAAAISP--- 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 241 KACWLMTNS-QNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAWD----RDDTVlhcSSFSKCL- 314
Cdd:PRK09082 163 RTRLIILNTpHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPelreRAFVV---SSFGKTYh 239
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 446683342 315 VPGFRIGWVAG----GSHARQIQrlQLMsTLSTSSPMQLALVDYLstRRYDAHLRRL 367
Cdd:PRK09082 240 VTGWKVGYCVApaalSAEFRKVH--QYN-TFTVNTPAQLALADYL--RAEPEHYLEL 291
|
|
| PRK08361 |
PRK08361 |
aspartate aminotransferase; Provisional |
146-439 |
2.36e-16 |
|
aspartate aminotransferase; Provisional
Pssm-ID: 236248 [Multi-domain] Cd Length: 391 Bit Score: 80.69 E-value: 2.36e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQ-QGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALSIPtdVKE 224
Cdd:PRK08361 71 GIPELREAIAEYYKKfYGVDVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIP--LRE 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 225 GIDLMALEQALQEYPVKACWL--MTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAWDRDD 302
Cdd:PRK08361 149 ENEFQPDPDELLELITKRTRMivINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDN 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 303 TVLhCSSFSKCL-VPGFRIGWVAGGSHA-RQIQRLQLMSTLSTSSPMQLALVDYLSTRRYDAHLRRLRRQLAERKQQAWQ 380
Cdd:PRK08361 229 TIL-ANSFSKTFaMTGWRLGFVIAPEQViKDMIKLHAYIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLK 307
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446683342 381 TlLRHLPaEVKIHHNDSGYFLWLELPE-QLDAGELSAKALEHL-ISIAPGKMFSTSG-AWTR 439
Cdd:PRK08361 308 R-LKEMP-HIKVFEPKGAFYVFANIDEtGMSSEDFAEWLLEKArVVVIPGTAFGKAGeGYIR 367
|
|
| PRK06207 |
PRK06207 |
pyridoxal phosphate-dependent aminotransferase; |
146-393 |
2.98e-16 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235742 Cd Length: 405 Bit Score: 80.58 E-value: 2.98e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQ-QGITVSP-DEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERL-------RLKAL 216
Cdd:PRK06207 79 GDADIRELLAARLAAfTGAPVDAaDELIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKLVEFFegemvpvQLDYL 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 217 SipTDVKEGIDLMALEQALQEyPVKAcWLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSEL-YFGRE-KPLP 294
Cdd:PRK06207 159 S--ADKRAGLDLDQLEEAFKA-GVRV-FLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLlYDGTSyTHLR 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 295 AKAWDRDD--TVLHCS---SFSkclvpGFRIGwVAGGSHA--RQIQRLQLMSTLSTSSPMQLALVDYLS------TRRYD 361
Cdd:PRK06207 235 ALPIDPENviTIMGPSkteSLS-----GYRLG-VAFGSPAiiDRMEKLQAIVSLRAAGYSQAVLRTWFSepdgwmKDRIA 308
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 446683342 362 AH-------LRRLR--RQLAERKQQAWQTLLRHLPA-EVKIH 393
Cdd:PRK06207 309 RHqairddlLRVLRgvEGVFVRAPQAGSYLFPRLPRlAVSLH 350
|
|
| PRK06348 |
PRK06348 |
pyridoxal phosphate-dependent aminotransferase; |
144-435 |
2.54e-15 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180537 Cd Length: 384 Bit Score: 77.45 E-value: 2.54e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 144 PPGNAELRYAIARRYAQQ-GITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALSIPTDV 222
Cdd:PRK06348 65 SGGDVELIEEIIKYYSKNyDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYE 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 223 KEG--IDLMALEqALQEYPVKAcwLMTNS-QNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGRE-KPLPAKAW 298
Cdd:PRK06348 145 EDGfqINVKKLE-ALITSKTKA--IILNSpNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDfVPMATLAG 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 299 DRDDTVLhCSSFSKCL-VPGFRIGWVAGGSHARQ-IQRLQLMSTLSTSSPMQLALVdylstrrydaHLRRLRRQLAERKQ 376
Cdd:PRK06348 222 MPERTIT-FGSFSKDFaMTGWRIGYVIAPDYIIEtAKIINEGICFSAPTISQRAAI----------YALKHRDTIVPLIK 290
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446683342 377 QAWQTLLRHLPAEVK------IHHNDSGYFLWLELPEQ-LDAGELSAKALE--HLISIaPGKMFSTSG 435
Cdd:PRK06348 291 EEFQKRLEYAYKRIEsipnlsLHPPKGSIYAFINIKKTgLSSVEFCEKLLKeaHVLVI-PGKAFGESG 357
|
|
| PRK09148 |
PRK09148 |
LL-diaminopimelate aminotransferase; |
145-435 |
3.97e-15 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 181674 [Multi-domain] Cd Length: 405 Bit Score: 77.03 E-value: 3.97e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 145 PGnaeLRYAIARRYAQQ-GITVSPD-EIVITAGALEAL-NLSlQAVTAPGDWVVVENPCF----YGALQALERLRlkalS 217
Cdd:PRK09148 71 PG---LRRAQAAYYARRfGVKLNPDtQVVATLGSKEGFaNMA-QAITAPGDVILCPNPSYpihaFGFIMAGGVIR----S 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 218 IPTDVKEGIdLMALEQALQEYPVKACWLMTN-SQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKP---- 292
Cdd:PRK09148 143 VPAEPDEEF-FPALERAVRHSIPKPIALIVNyPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPpsvl 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 293 -LP-AKawdrdDTVLHCSSFSKCL-VPGFRIGWVAGgsHARQIQRL-QLMSTLSTS--SPMQLALV-------DYLSTRR 359
Cdd:PRK09148 222 qVPgAK-----DVTVEFTSMSKTFsMAGWRMGFAVG--NERLIAALtRVKSYLDYGafTPIQVAATaalngpqDCIAEMR 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 360 ydAHLRRLRRQLAERKQQA-WQtllrhLPAEvkihhnDSGYFLWLELPEQL-DAG--ELSAKALEHL-ISIAPGKMFSTS 434
Cdd:PRK09148 295 --ELYKKRRDVLVESFGRAgWD-----IPPP------AASMFAWAPIPEAFrHLGslEFSKLLVEKAdVAVAPGVGFGEH 361
|
.
gi 446683342 435 G 435
Cdd:PRK09148 362 G 362
|
|
| PRK07309 |
PRK07309 |
pyridoxal phosphate-dependent aminotransferase; |
135-362 |
4.95e-15 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235985 Cd Length: 391 Bit Score: 76.69 E-value: 4.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 135 TAMSvienlppGNAELRYAIARRYAQQ-GITVSP-DEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLR 212
Cdd:PRK07309 64 TGMA-------GLLELRQAAADFVKEKyNLDYAPeNEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVG 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 213 LKALSIPTDVKEGIdLMA--LEQALQEYP--VKACWLMTNSqNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFG 288
Cdd:PRK07309 137 AEIVEIDTTENDFV-LTPemLEKAILEQGdkLKAVILNYPA-NPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYT 214
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446683342 289 REKPLPAKAWDRDDTVLhCSSFSKC-LVPGFRIGWVAGGSH--ARQIQRLQLMSTLSTSSpMQLALVDYLSTRRYDA 362
Cdd:PRK07309 215 GEPHVSIAEYLPDQTIL-INGLSKShAMTGWRIGLIFAPAEftAQLIKSHQYLVTAATTM-AQFAAVEALTNGKDDA 289
|
|
| MngR |
COG2188 |
DNA-binding transcriptional regulator, GntR family [Transcription]; |
3-106 |
5.14e-15 |
|
DNA-binding transcriptional regulator, GntR family [Transcription];
Pssm-ID: 441791 [Multi-domain] Cd Length: 238 Bit Score: 74.51 E-value: 5.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 3 KYQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVAPHPVCRSV------- 75
Cdd:COG2188 6 LYLQIADALRERIESGELPPGDRLPSERELAEEFGVSRMTVRKALDELVEEGLLERRQGRGTFVAEPKIEYPLsrltsft 85
|
90 100 110
....*....|....*....|....*....|....*....
gi 446683342 76 --------ATAAHVIRDEAVDINTYIFEMLQASRDTSVV 106
Cdd:COG2188 86 eelrargrEPSTRVLSAERVPADEEVAEALGLPPGAPVL 124
|
|
| HisC |
COG0079 |
Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase [Amino acid ... |
117-421 |
7.14e-15 |
|
Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase [Amino acid transport and metabolism]; Histidinol-phosphate/aromatic aminotransferase or cobyric acid decarboxylase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 439849 [Multi-domain] Cd Length: 341 Bit Score: 75.55 E-value: 7.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 117 LFPLPQLNRSLAQvsktatAMSVIENLP-PGNAELRYAIARRYAqqgitVSPDEIVITAGALEALNLSLQAVTAPGDWVV 195
Cdd:COG0079 25 YGPPPKVLEAIAA------ALDALNRYPdPDATALREALAEYYG-----VPPEQVLVGNGSDELIQLLARAFLGPGDEVL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 196 VENPCF--YGAlqALERLRLKALSIPTDVKEGIDLMALEQALQEyPVKACWLmTNSQNPLGFTLSAEKKARLVALLTHHn 273
Cdd:COG0079 94 VPEPTFseYPI--AARAAGAEVVEVPLDEDFSLDLDALLAAITE-RTDLVFL-CNPNNPTGTLLPREELEALLEALPAD- 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 274 VMLIEDDVYSElyFGREKPLPAKAWDRDDTVLHCSSFSKCL-VPGFRIGWVAGgsHARQIQRLQLMSTL-STSSPMQLAL 351
Cdd:COG0079 169 GLVVVDEAYAE--FVPEEDSALPLLARYPNLVVLRTFSKAYgLAGLRLGYAIA--SPELIAALRRVRGPwNVNSLAQAAA 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446683342 352 VDYLstrRYDAHLRRLRRQLAERKQQAWQTLlrhlpAEVKIHHNDS-GYFLWLELPEqlDAGELSAKALEH 421
Cdd:COG0079 245 LAAL---EDRAYLEETRARLRAERERLAAAL-----RALGLTVYPSqANFVLVRVPE--DAAELFEALLER 305
|
|
| PRK06107 |
PRK06107 |
aspartate transaminase; |
146-356 |
3.72e-14 |
|
aspartate transaminase;
Pssm-ID: 180403 Cd Length: 402 Bit Score: 74.00 E-value: 3.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQQ-GITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALSIPTDVKE 224
Cdd:PRK06107 71 GTPALRKAIIAKLERRnGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVACPEEQ 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 225 GIDLM--ALEQALQEypvKACWLMTNS-QNPLGFTLSAEKKARLVA-LLTHHNVMLIEDDVYSELYFGREkPLP---AKA 297
Cdd:PRK06107 151 GFKLTpeALEAAITP---RTRWLILNApSNPTGAVYSRAELRALADvLLRHPHVLVLTDDIYDHIRFDDE-PTPhllAAA 226
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446683342 298 WDRDDTVLHCSSFSKCL-VPGFRIGWVAGGSHARQ-IQRLQLMSTLSTSSPMQLALVDYLS 356
Cdd:PRK06107 227 PELRDRVLVTNGVSKTYaMTGWRIGYAAGPADLIAaINKLQSQSSSCPSSISQAAAAAALN 287
|
|
| his_ut_repres |
TIGR02018 |
histidine utilization repressor, proteobacterial; This model represents a proteobacterial ... |
3-113 |
5.66e-14 |
|
histidine utilization repressor, proteobacterial; This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators. [Energy metabolism, Amino acids and amines, Regulatory functions, DNA interactions]
Pssm-ID: 188194 [Multi-domain] Cd Length: 230 Bit Score: 71.19 E-value: 5.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 3 KYQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVAPhPVCRSVATAAHVI 82
Cdd:TIGR02018 2 LYQRIKQDILERIRSGEWPPGHRIPSEHELVAQYGCSRMTVNRALRELTDAGLLERRQGVGTFVAE-PKAQSALLEIRNI 80
|
90 100 110
....*....|....*....|....*....|....
gi 446683342 83 RDEAVDI-NTYIFEML--QASRDTSVVPFASAFP 113
Cdd:TIGR02018 81 ADEIVARgHRYRYELLelETRRATAEDAAALALP 114
|
|
| PLN02607 |
PLN02607 |
1-aminocyclopropane-1-carboxylate synthase |
167-428 |
1.73e-13 |
|
1-aminocyclopropane-1-carboxylate synthase
Pssm-ID: 215327 [Multi-domain] Cd Length: 447 Bit Score: 72.23 E-value: 1.73e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 167 PDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALE-RLRLKALSIPTDVKEG--IDLMALEQALQE-----Y 238
Cdd:PLN02607 120 PDRIVLTAGATAANELLTFILADPGDALLVPTPYYPGFDRDLRwRTGVKIVPIHCDSSNNfqVTPQALEAAYQEaeaanI 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 239 PVKACwLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGRE------KPLPAKAWDRDDTVLH-CSSFS 311
Cdd:PLN02607 200 RVRGV-LITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASefvsvaEIVEARGYKGVAERVHiVYSLS 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 312 KCL-VPGFRIGWVAGGSHARQIQRLQLMSTLSTSSPMQLALVDYLSTRRY-DAHLRRLRRQLAERKQQAWQTLLRhlpAE 389
Cdd:PLN02607 279 KDLgLPGFRVGTIYSYNDKVVTTARRMSSFTLVSSQTQHLLASMLSDEEFtENYIRTNRERLRKRYEMIVQGLRR---AG 355
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 446683342 390 VKIHHNDSGYFLWLELPEQLD----AGELS--AKALEHL-ISIAPG 428
Cdd:PLN02607 356 IECLKGNAGLFCWMNLSPLLEtptrEGELAlwDSILREVkLNISPG 401
|
|
| HTH_GNTR |
smart00345 |
helix_turn_helix gluconate operon transcriptional repressor; |
7-66 |
1.94e-13 |
|
helix_turn_helix gluconate operon transcriptional repressor;
Pssm-ID: 197669 [Multi-domain] Cd Length: 60 Bit Score: 64.90 E-value: 1.94e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 7 LAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYV 66
Cdd:smart00345 1 VAERLREDIVSGELRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQRRPGSGTFV 60
|
|
| PRK08363 |
PRK08363 |
alanine aminotransferase; Validated |
146-375 |
3.01e-13 |
|
alanine aminotransferase; Validated
Pssm-ID: 181402 Cd Length: 398 Bit Score: 70.99 E-value: 3.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARR-YAQQGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPC---------FYGAlqalerlrlKA 215
Cdd:PRK08363 71 GLPELREAIVKReKRKNGVDITPDDVRVTAAVTEALQLIFGALLDPGDEILIPGPSyppytglvkFYGG---------VP 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 216 LSIPTDVKEGI--DLMALEQALQEYPVKACwlMTNSQNPLGfTLSAEKKAR-LVALLTHHNVMLIEDDVYSELYFGREKP 292
Cdd:PRK08363 142 VEYRTIEEEGWqpDIDDIRKKITEKTKAIA--VINPNNPTG-ALYEKKTLKeILDIAGEHDLPVISDEIYDLMTYEGKHV 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 293 LPAKAwDRDDTVLHCSSFSKC-LVPGFRIGWVAGGSHARQIQRLQ------LMSTLSTSSPMQLALVDYLstRRYDAHLR 365
Cdd:PRK08363 219 SPGSL-TKDVPVIVMNGLSKVyFATGWRLGYIYFVDPEGKLAEVReaidklARIRLCPNTPAQFAAIAGL--TGPMDYLE 295
|
250
....*....|
gi 446683342 366 RLRRQLAERK 375
Cdd:PRK08363 296 EYMKKLKERR 305
|
|
| GntR |
pfam00392 |
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the ... |
3-66 |
1.44e-12 |
|
Bacterial regulatory proteins, gntR family; This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerization domain. The GntR-like proteins include the following sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA, DevA, DasR. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships. The DasR regulator has been shown to be a global regulator of primary metabolism and development in Streptomyces coelicolor.
Pssm-ID: 306822 [Multi-domain] Cd Length: 64 Bit Score: 62.63 E-value: 1.44e-12
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446683342 3 KYQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYV 66
Cdd:pfam00392 1 LYEQVYARLREDILSGRLRPGDKLPSERELAAEFGVSRTTVREALRRLEAEGLVERRQGRGTFV 64
|
|
| PRK07337 |
PRK07337 |
pyridoxal phosphate-dependent aminotransferase; |
144-322 |
4.82e-12 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 180937 Cd Length: 388 Bit Score: 67.39 E-value: 4.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 144 PPGNAELRYAIARRYAQQ-GITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPC------FYGALQALERLrlkal 216
Cdd:PRK07337 66 ALGLAPLREAIAAWYARRfGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDPSypcnrhFVAAAEGRPVL----- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 217 sIPTDVKEGIDLMALEqalqeypVKACW-------LMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFgr 289
Cdd:PRK07337 141 -VPSGPAERFQLTAAD-------VEAAWgertrgvLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSY-- 210
|
170 180 190
....*....|....*....|....*....|....
gi 446683342 290 EKPlPAKAWDRDDTVLHCSSFSKCL-VPGFRIGW 322
Cdd:PRK07337 211 DAA-PVSALSLGDDVITINSFSKYFnMTGWRLGW 243
|
|
| PRK08068 |
PRK08068 |
transaminase; Reviewed |
146-435 |
6.77e-12 |
|
transaminase; Reviewed
Pssm-ID: 181219 Cd Length: 389 Bit Score: 66.87 E-value: 6.77e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQQ-GITVSPD-EIVITAGALEALNLSLQAVTAPGDWVVVENPCF--Y--GALQA---LERLRLKA- 215
Cdd:PRK08068 71 GYPFLKEAAADFYKREyGVTLDPEtEVAILFGGKAGLVELPQCLMNPGDTILVPDPGYpdYlsGVALAraqFETMPLIAe 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 216 -------LSIPTDVKEGIDLMALEqalqeYPvkacwlmtnsQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFG 288
Cdd:PRK08068 151 nnflpdyTKIPEEVAEKAKLMYLN-----YP----------NNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFD 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 289 REKPLP------AKawdrdDTVLHCSSFSKCL-VPGFRIGWVAGgsHARQIQRLQLMST---LSTSSPMQLALVDYLSTR 358
Cdd:PRK08068 216 GQKPVSflqtpgAK-----DVGIELYTLSKTFnMAGWRVAFAVG--NESVIEAINLLQDhlfVSLFGAIQDAAIEALLSD 288
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446683342 359 ryDAHLRRLrRQLAERKQQAWQTLLRHLPAEVKIhhnDSG-YFLWLELPEQLDAGELSAKALEHL-ISIAPGKMFSTSG 435
Cdd:PRK08068 289 --QSCVAEL-VARYESRRNAFISACREIGWEVDA---PKGsFFAWMPVPKGYTSEQFADLLLEKAhVAVAPGNGFGEHG 361
|
|
| PLN00145 |
PLN00145 |
tyrosine/nicotianamine aminotransferase; Provisional |
146-324 |
1.04e-11 |
|
tyrosine/nicotianamine aminotransferase; Provisional
Pssm-ID: 215074 [Multi-domain] Cd Length: 430 Bit Score: 66.72 E-value: 1.04e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQQ-GITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENP--CFYGALQALERLRLKALSIPTDV 222
Cdd:PLN00145 95 GLLPARRAIAEYLSRDlPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPgyPLYEARAVFSGLEVRHFDLLPER 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 223 KEGIDLMALEQALQEYPVKAcwLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAWDRDD 302
Cdd:PLN00145 175 GWEVDLEGVEALADENTVAM--VIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVA 252
|
170 180
....*....|....*....|...
gi 446683342 303 TVLHCSSFSK-CLVPGFRIGWVA 324
Cdd:PLN00145 253 PVLTLGSISKrWVVPGWRLGWIA 275
|
|
| FadR |
COG2186 |
DNA-binding transcriptional regulator, FadR family [Transcription]; |
2-99 |
2.25e-11 |
|
DNA-binding transcriptional regulator, FadR family [Transcription];
Pssm-ID: 441789 [Multi-domain] Cd Length: 232 Bit Score: 63.41 E-value: 2.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 2 KKYQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVAPhpvcRSVATAAHV 81
Cdd:COG2186 7 SLAEQVAEQLRELILSGELKPGDRLPSERELAEQLGVSRTTVREALRALEALGLVEVRQGGGTFVRE----PSPWALLDP 82
|
90
....*....|....*...
gi 446683342 82 IRDEAVDINTYIFEMLQA 99
Cdd:COG2186 83 LALLLALDDASLRDLLEA 100
|
|
| PTZ00433 |
PTZ00433 |
tyrosine aminotransferase; Provisional |
89-356 |
2.73e-11 |
|
tyrosine aminotransferase; Provisional
Pssm-ID: 185613 Cd Length: 412 Bit Score: 65.19 E-value: 2.73e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 89 INTYIFEMLQASRDTSVVPFASAFP--DPRLFPLPQLNRSLAQVSKTatamSVIENLPP--GNAELRYAIA----RRYAQ 160
Cdd:PTZ00433 19 LRTVTDNAKPSPSPKSIIKLSVGDPtlDGNLLTPAIQTKALVEAVDS----QECNGYPPtvGSPEAREAVAtywrNSFVH 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 161 ---QGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCF--YGALQALERLRLKALSIPTDVKEGIDLMALeQAL 235
Cdd:PTZ00433 95 kesLKSTIKKDNVVLCSGVSHAILMALTALCDEGDNILVPAPGFphYETVCKAYGIEMRFYNCRPEKDWEADLDEI-RRL 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 236 QEYPVKAcWLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAWDRDDTVLHCSSFSKCL- 314
Cdd:PTZ00433 174 VDDRTKA-LIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLv 252
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 446683342 315 VPGFRIGWV-------AGGSHARQIQRLQlMSTLSTSSPMQLALVDYLS 356
Cdd:PTZ00433 253 VPGWRLGWLllvdphgNGGDFLDGMKRLG-MLVCGPCSVVQAALGEALL 300
|
|
| PLN02376 |
PLN02376 |
1-aminocyclopropane-1-carboxylate synthase |
146-439 |
2.83e-11 |
|
1-aminocyclopropane-1-carboxylate synthase
Pssm-ID: 178004 [Multi-domain] Cd Length: 496 Bit Score: 65.49 E-value: 2.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRY--AQQG-ITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPcFYGALQALERLR--LKALSIPT 220
Cdd:PLN02376 95 GLKKFRQAIAHFMgkARGGkVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSP-YYAAFDRDLRWRtgVEIIPVPC 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 221 DVKEGIDLM------ALEQALQEYPVKACWLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYF--GREKP 292
Cdd:PLN02376 174 SSSDNFKLTvdaadwAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFagGDFVS 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 293 LPAKAWDRD------DTVLHCSSFSKCL-VPGFRIGWV-----AGGSHARQIQRLQLMstlstSSPMQLALVDYLSTRRY 360
Cdd:PLN02376 254 VAEVVNDVDisevnvDLIHIVYSLSKDMgLPGFRVGIVysfndSVVSCARKMSSFGLV-----SSQTQLMLASMLSDDQF 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 361 -DAHLRRLRRQLAERkQQAWQTLLRHlpAEVKIHHNDSGYFLWLELPEQL-DAGELSAK-ALEHLI------SIAPGKMF 431
Cdd:PLN02376 329 vDNFLMESSRRLGIR-HKVFTTGIKK--ADIACLTSNAGLFAWMDLRHLLrDRNSFESEiELWHIIidkvklNVSPGSSF 405
|
....*....
gi 446683342 432 S-TSGAWTR 439
Cdd:PLN02376 406 RcTEPGWFR 414
|
|
| PRK06225 |
PRK06225 |
pyridoxal phosphate-dependent aminotransferase; |
144-369 |
5.71e-11 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235749 [Multi-domain] Cd Length: 380 Bit Score: 64.00 E-value: 5.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 144 PPGNAELRYAIArryaqQGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENP-----CFYGALQALERLRLKALS- 217
Cdd:PRK06225 65 PEGFPELRELIL-----KDLGLDDDEALITAGATESLYLVMRAFLSPGDNAVTPDPgyliiDNFASRFGAEVIEVPIYSe 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 218 ------IPTDVKEGIDLMAleqalqeypvkACWLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSElyFGREK 291
Cdd:PRK06225 140 ecnyklTPELVKENMDENT-----------RLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRD--FAREH 206
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446683342 292 PLPAKAwDRDDTVLhCSSFSK-CLVPGFRIGWVAGGSHARQIQRLQLMSTLSTSSPMQLALVDYLSTRryDAHLRRLRR 369
Cdd:PRK06225 207 TLAAEY-APEHTVT-SYSFSKiFGMAGLRIGAVVATPDLIEVVKSIVINDLGTNVIAQEAAIAGLKVK--DEWIDRIRR 281
|
|
| PLN02656 |
PLN02656 |
tyrosine transaminase |
165-322 |
9.10e-11 |
|
tyrosine transaminase
Pssm-ID: 178262 [Multi-domain] Cd Length: 409 Bit Score: 63.40 E-value: 9.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 165 VSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCF--YGALQALERLRLKALSIPTDVKEGIDLMALEQALQEYPVka 242
Cdd:PLN02656 94 LSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFpiYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTV-- 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 243 CWLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAWDRDDTVLHCSSFSK-CLVPGFRIG 321
Cdd:PLN02656 172 ALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKrWIVPGWRLG 251
|
.
gi 446683342 322 W 322
Cdd:PLN02656 252 W 252
|
|
| PRK07324 |
PRK07324 |
transaminase; Validated |
146-325 |
3.27e-10 |
|
transaminase; Validated
Pssm-ID: 235989 Cd Length: 373 Bit Score: 61.49 E-value: 3.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQqgitVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCF---------YGALQALERLRLKAL 216
Cdd:PRK07324 63 GSPEFKEAVASLYQN----VKPENILQTNGATGANFLVLYALVEPGDHVISVYPTYqqlydipesLGAEVDYWQLKEENG 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 217 SIPtdvkegiDLMALEQALQEYPVKACwlMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYseLYFGREKPLPAK 296
Cdd:PRK07324 139 WLP-------DLDELRRLVRPNTKLIC--INNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVY--RPLDEDGSTPSI 207
|
170 180 190
....*....|....*....|....*....|..
gi 446683342 297 A--WDRDDTVlhcSSFSKCL-VPGFRIGWVAG 325
Cdd:PRK07324 208 AdlYEKGIST---NSMSKTYsLPGIRVGWIAA 236
|
|
| PRK12414 |
PRK12414 |
putative aminotransferase; Provisional |
145-356 |
1.01e-09 |
|
putative aminotransferase; Provisional
Pssm-ID: 183514 Cd Length: 384 Bit Score: 60.19 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 145 PGNAELRYAIARRYAQ-QGITVSPD-EIVITAGALEALNLSLQAVTAPGDWVVVENPCF--YGALqalerLRLKAlSIPT 220
Cdd:PRK12414 66 AGIAALREALAEKTERlYGARYDPAsEVTVIASASEGLYAAISALVHPGDEVIYFEPSFdsYAPI-----VRLQG-ATPV 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 221 DVKEGIDLMAL---EQALQEYPVKACWLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYF-GREKPLPAK 296
Cdd:PRK12414 140 AIKLSPEDFRVnwdEVAAAITPRTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFdGARHHSMAR 219
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446683342 297 AWDRDDTVLHCSSFSKCL-VPGFRIGW-VAGGSHARQIQRLQLMSTLSTSSPMQLALVDYLS 356
Cdd:PRK12414 220 HRELAERSVIVSSFGKSYhVTGWRVGYcLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALA 281
|
|
| PLN02450 |
PLN02450 |
1-aminocyclopropane-1-carboxylate synthase |
163-405 |
3.62e-09 |
|
1-aminocyclopropane-1-carboxylate synthase
Pssm-ID: 178069 [Multi-domain] Cd Length: 468 Bit Score: 58.61 E-value: 3.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 163 ITVSPDEIVITAGALEAlNLSLQAVTA-PGDWVVVENPCFYGALQALeRLRLKALSIPTDVKEG----IDLMALEQALQE 237
Cdd:PLN02450 107 VTFDPNKLVLTAGATSA-NETLMFCLAePGDAFLLPTPYYPGFDRDL-KWRTGVEIVPIHCSSSngfqITESALEEAYQQ 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 238 -----YPVKACwLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGRE------------KPLPAKAWDR 300
Cdd:PLN02450 185 aqklnLKVKGV-LITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPgfvsvmevlkdrKLENTDVSNR 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 301 DDTVLhcsSFSKCL-VPGFRIGWVAgGSHARQIQRLQLMSTLS-TSSPMQLALVDYLSTRRYDAH-LRRLRRQLAERKQQ 377
Cdd:PLN02450 264 VHIVY---SLSKDLgLPGFRVGAIY-SNDEMVVSAATKMSSFGlVSSQTQYLLSALLSDKKFTKNyLEENQKRLKQRQKK 339
|
250 260
....*....|....*....|....*....
gi 446683342 378 awqtLLRHL-PAEVKIHHNDSGYFLWLEL 405
Cdd:PLN02450 340 ----LVSGLeAAGIKCLKSNAGLFCWVDM 364
|
|
| PRK07681 |
PRK07681 |
LL-diaminopimelate aminotransferase; |
146-435 |
3.91e-09 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 181081 Cd Length: 399 Bit Score: 58.28 E-value: 3.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRY-AQQGITVSPD-EIVITAGALEALNLSLQAVTAPGDWVVVENPCF--YGALQALErlrlKALSIPTD 221
Cdd:PRK07681 70 GIQEFHEAVTEYYnNTHNVILNADkEVLLLMGSQDGLVHLPMVYANPGDIILVPDPGYtaYETGIQMA----GATSYYMP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 222 VKEGIDLMA-LEQALQEYPVKACWLMTN-SQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAWD 299
Cdd:PRK07681 146 LKKENDFLPdLELIPEEIADKAKMMILNfPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVP 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 300 R-DDTVLHCSSFSKCL-VPGFRIGWVAGgsHARQIQRL-QLMSTLSTSS--PMQLALVDYLstrRYDAHLRRLRRQLAER 374
Cdd:PRK07681 226 GaKEVGVEINSLSKSYsLAGSRIGYMIG--NEEIVRALtQFKSNTDYGVflPIQKAACAAL---RNGAAFCEKNRGIYQE 300
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446683342 375 KQQAWQTLLRHLPAEVKihHNDSGYFLWLELPEQLDAGELSAKALEHL-ISIAPGKMFSTSG 435
Cdd:PRK07681 301 RRDTLVDGFRTFGWNVD--KPAGSMFVWAEIPKGWTSLSFAYALMDRAnVVVTPGHAFGPHG 360
|
|
| PRK09276 |
PRK09276 |
LL-diaminopimelate aminotransferase; Provisional |
146-463 |
4.75e-09 |
|
LL-diaminopimelate aminotransferase; Provisional
Pssm-ID: 181749 Cd Length: 385 Bit Score: 58.00 E-value: 4.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQQ-GITVSPDEIVITA-GALEAL-NLSLqAVTAPGDWVVVENPCF--Y--GALQAL---ERLRLKA 215
Cdd:PRK09276 70 GMLEFRKAVADWYKRRfGVELDPETEVISLiGSKEGIaHIPL-AFVNPGDVVLVPDPGYpvYkiGTIFAGgepYFMPLKE 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 216 L--------SIPTDVKEGIDLMALEqalqeYPvkacwlmtnsQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYF 287
Cdd:PRK09276 149 EngflpdldAIPEDVAKKAKLMFIN-----YP----------NNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAY 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 288 GREKPLP------AKawdrdDTVLHCSSFSKCL-VPGFRIGWVAGgsHARQIQRL-QLMSTLSTSSP--MQLALVDYLST 357
Cdd:PRK09276 214 DGYKPPSflevpgAK-----DVGIEFHSLSKTYnMTGWRIGFAVG--NADLIAGLgKVKSNVDSGVFqaIQEAGIAALNG 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 358 RryDAHLRRLRRQLAERKQQAWQTlLRHLPAEVKIhhNDSGYFLWLELPEQLDAGELSAKALEHL-ISIAPGKMFSTSGA 436
Cdd:PRK09276 287 P--QEVVEELRKIYQERRDILVEG-LRKLGLEVEP--PKATFYVWAPVPKGYTSAEFATLLLDKAgVVVTPGNGFGEYGE 361
|
330 340 350
....*....|....*....|....*....|.
gi 446683342 437 wtRFFRF----NTawhwgEREEQAVKQLGSL 463
Cdd:PRK09276 362 --GYFRIaltvPD-----ERIEEAVERIKKL 385
|
|
| PRK08636 |
PRK08636 |
LL-diaminopimelate aminotransferase; |
150-435 |
5.90e-09 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 236316 Cd Length: 403 Bit Score: 57.79 E-value: 5.90e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 150 LRYAIARRYAQQ-GITVSPD-EIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQA-------LERLRLKaLSIPT 220
Cdd:PRK08636 76 LRLAICNWYKRKyNVDLDPEtEVVATMGSKEGYVHLVQAITNPGDVAIVPDPAYPIHSQAfilaggnVHKMPLE-YNEDF 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 221 DVKEGIDLMALEQALQEYPVKACWLMTN-SQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYF-GREKPLPAKAW 298
Cdd:PRK08636 155 ELDEDQFFENLEKALRESSPKPKYVVVNfPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFdGYKTPSILEVE 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 299 DRDDTVLHCSSFSKCL-VPGFRIGWVAGgsHARQIQRLQLMST---LSTSSPMQLAlvdylSTRRYDAHlRRLRRQLAER 374
Cdd:PRK08636 235 GAKDVAVESYTLSKSYnMAGWRVGFVVG--NKKLVGALKKIKSwldYGMFTPIQVA-----ATIALDGD-QSCVEEIRET 306
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446683342 375 KQQAWQTLLRHLP-AEVKIHHNDSGYFLWLELPEQ---LDAGELSAKAL-EHLISIAPGKMFSTSG 435
Cdd:PRK08636 307 YRKRRDVLIESFAnAGWELQKPRASMFVWAKIPEParhLGSLEFSKQLLtEAKVAVSPGIGFGEYG 372
|
|
| PRK14999 |
PRK14999 |
histidine utilization repressor; Provisional |
4-87 |
6.23e-09 |
|
histidine utilization repressor; Provisional
Pssm-ID: 184961 [Multi-domain] Cd Length: 241 Bit Score: 56.48 E-value: 6.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 4 YQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVApHPVCRSVATAAHVIR 83
Cdd:PRK14999 14 YETVKQDICKKIAGGVWQPHDRIPSEAELVAQYGFSRMTINRALRELTDEGWLVRLQGVGTFVA-EPKGQSALFEVRSIA 92
|
....
gi 446683342 84 DEAV 87
Cdd:PRK14999 93 EEIA 96
|
|
| PRK05957 |
PRK05957 |
pyridoxal phosphate-dependent aminotransferase; |
140-439 |
1.17e-08 |
|
pyridoxal phosphate-dependent aminotransferase;
Pssm-ID: 235654 Cd Length: 389 Bit Score: 57.00 E-value: 1.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 140 IENLPPgnaeLRYAIARRYAQQ-GITVSPDE-IVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALS 217
Cdd:PRK05957 64 VQGIPP----LLEAITQKLQQDnGIELNNEQaIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPIL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 218 IPTDVKEGIDLMALEQALQEypvKACWLMTNS-QNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPL-PA 295
Cdd:PRK05957 140 VPTDDNYQLQPEAIEQAITP---KTRAIVTISpNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFsPG 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 296 KAWDRDDTVLHCSSFSKCL-VPGFRIGWVAGGSH-ARQIQRLQlmSTLSTSSPM--QLALVDYLSTRRydAHLRRLRRQL 371
Cdd:PRK05957 217 SIPGSGNHTISLYSLSKAYgFASWRIGYMVIPIHlLEAIKKIQ--DTILICPPVvsQYAALGALQVGK--SYCQQHLPEI 292
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446683342 372 AERKQQAWQTLLRhLPAEVKIHHNDSGYFLWLELPEQLDAGELsAKAL--EHLISIAPGKMFS-TSGAWTR 439
Cdd:PRK05957 293 AQVRQILLKSLGQ-LQDRCTLHPANGAFYCFLKVNTDLNDFEL-VKQLirEYRVAVIPGTTFGmKNGCYLR 361
|
|
| PLN02187 |
PLN02187 |
rooty/superroot1 |
165-324 |
1.20e-08 |
|
rooty/superroot1
Pssm-ID: 215119 [Multi-domain] Cd Length: 462 Bit Score: 57.04 E-value: 1.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 165 VSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCF--YGALQALERLRLKALSIPTDVKEGIDLMALEQALQEYPVKA 242
Cdd:PLN02187 129 LTPEDIFLTAGCNQGIEIVFESLARPNANILLPRPGFphYDARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAM 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 243 cwLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAWDRDDTVLHCSSFSK-CLVPGFRIG 321
Cdd:PLN02187 209 --VVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKgWVVPGWKIG 286
|
...
gi 446683342 322 WVA 324
Cdd:PLN02187 287 WIA 289
|
|
| PRK05166 |
PRK05166 |
histidinol-phosphate transaminase; |
119-322 |
1.51e-08 |
|
histidinol-phosphate transaminase;
Pssm-ID: 179950 Cd Length: 371 Bit Score: 56.30 E-value: 1.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 119 PLPQLNRSLAQVSktatamSVIENLP-PGNAELRYAIARRYAqqgitVSPDEIVITAGALEALNLSLQAVTAPGDWVVVE 197
Cdd:PRK05166 50 PSPAVRRAFADIA------ELLRLYPdPQGRALREAIAARTG-----VPADRIILGNGSEDLIAVICRAVLRPGDRVVTL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 198 NPCF-----YGALQAlerLRLKALSIPTDVkeGIDLMALEQALQEYPVKAcwLMTNSQNPLGFTLSAEKKARLVALLTHH 272
Cdd:PRK05166 119 YPSFplhedYPTMMG---ARVERVTVTPDL--GFDLDALCAAVARAPRML--MFSNPSNPVGSWLTADQLARVLDATPPE 191
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446683342 273 NVMLIeDDVYSELYFGREKPLPA---KAWDRDDTVLHcsSFSKCL-VPGFRIGW 322
Cdd:PRK05166 192 TLIVV-DEAYAEYAAGDDYPSALtllKARGLPWIVLR--TFSKAYgLAGLRVGY 242
|
|
| PLN00143 |
PLN00143 |
tyrosine/nicotianamine aminotransferase; Provisional |
165-323 |
2.53e-08 |
|
tyrosine/nicotianamine aminotransferase; Provisional
Pssm-ID: 165711 [Multi-domain] Cd Length: 409 Bit Score: 55.79 E-value: 2.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 165 VSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCF--YGALQALERLRLKALSIPTDVKEGIDLMALEQALQEYPVKA 242
Cdd:PLN00143 95 LSPDDVYLTLGCKHAAEIIIKVLARPEANILLPRPGFpdVETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAM 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 243 cwLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPLPAKAWDRDDTVLHCSSFSK-CLVPGFRIG 321
Cdd:PLN00143 175 --VIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKrWMIPGWGLG 252
|
..
gi 446683342 322 WV 323
Cdd:PLN00143 253 WL 254
|
|
| PRK09147 |
PRK09147 |
succinyldiaminopimelate transaminase; Provisional |
146-406 |
5.37e-08 |
|
succinyldiaminopimelate transaminase; Provisional
Pssm-ID: 236393 Cd Length: 396 Bit Score: 54.88 E-value: 5.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIA----RRYAQQgiTVSPD-EIVITAGALEALNLSLQAV---TAPGDWVVVENPcFY----GA--LQALERL 211
Cdd:PRK09147 66 GLPALREAIAawleRRYGLP--ALDPAtQVLPVNGSREALFAFAQTVidrDGPGPLVVCPNP-FYqiyeGAalLAGAEPY 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 212 RLKAL----------SIPTDVKEGIDLMALeqalqeypvkaCwlmtNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDV 281
Cdd:PRK09147 143 FLNCDpannfapdfdAVPAEVWARTQLLFV-----------C----SPGNPTGAVLPLDDWKKLFALSDRYGFVIASDEC 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 282 YSELYFGREKPLP-----AKAWDRDD----TVLHcsSFSK-CLVPGFRIGWVAGgsHARQIQRLQLMSTL---STSSPMQ 348
Cdd:PRK09147 208 YSEIYFDEAAPPLglleaAAELGRDDfkrlVVFH--SLSKrSNVPGLRSGFVAG--DAALLKKFLLYRTYhgcAMPPAVQ 283
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446683342 349 LAlvdylSTRRYD--AHLRRLRRQLAErKQQAWQTLLrhlpAEV-KIHHNDSGYFLWLELP 406
Cdd:PRK09147 284 AA-----SIAAWNdeAHVRENRALYRE-KFDAVTPIL----APVlDVQLPDAGFYLWAKVP 334
|
|
| avtA |
PRK09440 |
valine--pyruvate transaminase; Provisional |
251-407 |
6.48e-08 |
|
valine--pyruvate transaminase; Provisional
Pssm-ID: 236517 Cd Length: 416 Bit Score: 54.48 E-value: 6.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 251 NPLGFTLSAEKKARLVALLTHHNVMLIEDDVYS----ELYFGREKPLpakaWDrdDTVLHCSSFSKCLVPGFRIGWVAGG 326
Cdd:PRK09440 190 NPTGNVLTDEELEKLDALARQHNIPLLIDNAYGppfpGIIFSEATPL----WN--PNIILCMSLSKLGLPGVRCGIVIAD 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 327 ShaRQIQRLQLMST---LSTSSPMQLALVDYLStrryDAHLRRLRRQL-----AERKQQAWQTLLRHLPAE-VKIHHNDS 397
Cdd:PRK09440 264 E--EIIEALSNMNGiisLAPGRLGPAIAAEMIE----SGDLLRLSETVirpfyRQKVQLAIALLRRYLPDEpCLIHKPEG 337
|
170
....*....|
gi 446683342 398 GYFLWLELPE 407
Cdd:PRK09440 338 AIFLWLWFKD 347
|
|
| PRK05942 |
PRK05942 |
aspartate aminotransferase; Provisional |
144-435 |
3.38e-07 |
|
aspartate aminotransferase; Provisional
Pssm-ID: 180317 Cd Length: 394 Bit Score: 52.41 E-value: 3.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 144 PP--GNAELRYAIARRYAQQ-GITVSPD-EIVITAGALEALNLSLQAVTAPGDWVVVENPC----FYGALQA---LERLR 212
Cdd:PRK05942 70 PPfeGTASFRQAITDWYHRRyGVELDPDsEALPLLGSKEGLTHLALAYVNPGDVVLVPSPAypahFRGPLIAgaqIYPII 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 213 LKA--------LSIPTDVKEGIDLMALEqalqeYPvkacwlmtnsQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSE 284
Cdd:PRK05942 150 LKPendwlidlSSIPEEVAQQAKILYFN-----YP----------SNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAE 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 285 LYFGREKP-----LP-AKawdrdDTVLHCSSFSKCL-VPGFRIGWVAGGSHArqIQRLQlmsTLSTS------SPMQLAL 351
Cdd:PRK05942 215 LAFDGYQPtslleIPgAK-----DIGVEFHTLSKTYnMAGWRVGFVVGNRHI--IQGLR---TLKTNldygifSALQKAA 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 352 VDYLSTRryDAHLrrlrRQLAERKQQAWQTLLRHLpAEV--KIHHNDSGYFLWLELPEQLDAGELSAKALEHL-ISIAPG 428
Cdd:PRK05942 285 ETALQLP--DSYL----QQVQERYRTRRDFLIQGL-GELgwNIPPTKATMYLWVPCPVGMGSTDFALNVLQKTgVVVTPG 357
|
....*..
gi 446683342 429 KMFSTSG 435
Cdd:PRK05942 358 NAFGEGG 364
|
|
| PRK11523 |
PRK11523 |
transcriptional regulator ExuR; |
4-110 |
1.43e-06 |
|
transcriptional regulator ExuR;
Pssm-ID: 183176 [Multi-domain] Cd Length: 253 Bit Score: 49.46 E-value: 1.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 4 YQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVAphpvcrSVATAAHVIR 83
Cdd:PRK11523 10 YQQLAAELKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKGSGIHVV------SNQPRHQQAA 83
|
90 100 110
....*....|....*....|....*....|
gi 446683342 84 DEAVDINTY-IFEMLQASR--DTSVVPFAS 110
Cdd:PRK11523 84 DNNMEFANYgPFELLQARQliESNIAEFAA 113
|
|
| PRK07366 |
PRK07366 |
LL-diaminopimelate aminotransferase; |
146-464 |
2.09e-06 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 180947 Cd Length: 388 Bit Score: 49.68 E-value: 2.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIARRYAQQ-GITVSPD-EIVITAGALEALNLSLQAVTAPGDWVVVENP---------------CFYGALQAl 208
Cdd:PRK07366 69 GTLDFREAAAQWYEQRfGLAVDPEtEVLPLIGSQEGTAHLPLAVLNPGDFALLLDPgypshaggvylaggqIYPMPLRA- 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 209 ERLRLKALS-IPTDVKEGIDLMALEqalqeYPVKAcwlmTNSQNPLGFTLSAekkarlVALLTHHNVMLIEDDVYSELYF 287
Cdd:PRK07366 148 ENDFLPVFAdIPTEVLAQARLMVLS-----YPHNP----TTAIAPLSFFQEA------VAFCQQHDLVLVHDFPYVDLVF 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 288 GREKPLPA--KAwDRDDTV-LHCSSFSKCL-VPGFRIGWVAGgsHARQIQRLQLMStlstsspmqlALVDY--------- 354
Cdd:PRK07366 213 DGEVEPPSilQA-DPEKSVsIEFFTLSKSYnMGGFRIGFAIG--NAQLIQALRQVK----------AVVDFnqyrgilng 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 355 --LSTRRYDAHLRRLRRQLAERKQQAWQTLLRH-----LPAevkihhndSGYFLWLELPE--QLDAGELSAKALEHL-IS 424
Cdd:PRK07366 280 aiAALTGPQATVQQTVQIFRQRRDAFINALHQIgwpvpLPE--------ATMYVWAKLPEpwQGNSVEFCTQLVAQTgVA 351
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 446683342 425 IAPGKMFSTSG-AWTRFfrfnTAWHWGEREEQAVKQLGSLI 464
Cdd:PRK07366 352 ASPGSGFGKSGeGYVRF----ALVHDPDILEEAVERIAAFL 388
|
|
| PRK05839 |
PRK05839 |
succinyldiaminopimelate transaminase; |
146-325 |
2.76e-06 |
|
succinyldiaminopimelate transaminase;
Pssm-ID: 180281 Cd Length: 374 Bit Score: 49.30 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYA----IARRYaqqGITVSPDEIVITAGALEAL-NLSLQAV-TAPGDWVVVENPcFY----GALQALerlRLKA 215
Cdd:PRK05839 61 GEESLREAqrgfFKRRF---KIELKENELIPTFGTREVLfNFPQFVLfDKQNPTIAYPNP-FYqiyeGAAIAS---RAKV 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 216 LSIP----TDVKEGIDlmalEQALQEypvkACWLMTNS-QNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGRE 290
Cdd:PRK05839 134 LLMPltkeNDFTPSLN----EKELQE----VDLVILNSpNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTP 205
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 446683342 291 KP--LPA--KAWDRD-DTVLHCSSFSKCL-VPGFRIGWVAG 325
Cdd:PRK05839 206 PPslLEAsiLVGNESfKNVLVINSISKRSsAPGLRSGFIAG 246
|
|
| PRK09764 |
PRK09764 |
GntR family transcriptional regulator; |
3-66 |
2.98e-06 |
|
GntR family transcriptional regulator;
Pssm-ID: 182065 [Multi-domain] Cd Length: 240 Bit Score: 48.29 E-value: 2.98e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446683342 3 KYQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYV 66
Cdd:PRK09764 6 LYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTYV 69
|
|
| GntR |
COG1802 |
DNA-binding transcriptional regulator, GntR family [Transcription]; |
5-68 |
3.20e-06 |
|
DNA-binding transcriptional regulator, GntR family [Transcription];
Pssm-ID: 441407 [Multi-domain] Cd Length: 222 Bit Score: 47.99 E-value: 3.20e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446683342 5 QRLAEQIREQIASGVWQPGDRLpSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVAP 68
Cdd:COG1802 14 EQVYEALREAILSGELPPGERL-SEAELAERLGVSRTPVREALRRLEAEGLVEIRPNRGARVAP 76
|
|
| PRK10225 |
PRK10225 |
Uxu operon transcriptional regulator; |
2-110 |
1.25e-05 |
|
Uxu operon transcriptional regulator;
Pssm-ID: 182318 [Multi-domain] Cd Length: 257 Bit Score: 46.55 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 2 KKYQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVAPHPVCRSVATA-AH 80
Cdd:PRK10225 9 RPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRGAGIYVLDSSGSHNTDSPdAN 88
|
90 100 110
....*....|....*....|....*....|..
gi 446683342 81 VIRDEAVdintyiFEMLQASR--DTSVVPFAS 110
Cdd:PRK10225 89 VCNDAGP------FELLQARQllESNIAEFAA 114
|
|
| PRK10421 |
PRK10421 |
DNA-binding transcriptional repressor LldR; Provisional |
6-70 |
8.65e-05 |
|
DNA-binding transcriptional repressor LldR; Provisional
Pssm-ID: 236690 [Multi-domain] Cd Length: 253 Bit Score: 43.99 E-value: 8.65e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446683342 6 RLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLLESQGRIIARPQSGYYVAPHP 70
Cdd:PRK10421 6 EVADRVRALIEEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSRRGGGTFIRWRH 70
|
|
| PRK06290 |
PRK06290 |
LL-diaminopimelate aminotransferase; |
146-328 |
1.85e-04 |
|
LL-diaminopimelate aminotransferase;
Pssm-ID: 235772 Cd Length: 410 Bit Score: 43.87 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 146 GNAELRYAIA----RRYAQQGItvSPD-EIVITAGALEALNLSLQAVTAPGDWVVVENPCF---------YGAlqALERL 211
Cdd:PRK06290 82 GIQEFKEAAArymeKVFGVKDI--DPVtEVIHSIGSKPALAMLPSCFINPGDVTLMTVPGYpvtgthtkyYGG--EVYNL 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 212 RLKA--------LSIPTDVKEGIDLMALEqalqeYPvkacwlmtnsQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYS 283
Cdd:PRK06290 158 PLLEennflpdlDSIPKDIKEKAKLLYLN-----YP----------NNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYA 222
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 446683342 284 ELYFGrEKPLP------AKawdrdDTVLHCSSFSKCL-VPGFRIGWVAGGSH 328
Cdd:PRK06290 223 ALTFD-GKPLSflsvpgAK-----EVGVEIHSLSKAYnMTGWRLAFVVGNEL 268
|
|
| PTZ00377 |
PTZ00377 |
alanine aminotransferase; Provisional |
145-292 |
2.16e-04 |
|
alanine aminotransferase; Provisional
Pssm-ID: 240391 [Multi-domain] Cd Length: 481 Bit Score: 43.41 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 145 PGNAELRYAIARrYAQQ--GITVSPDEIVITAGALEALNLSLQAVTA-PGDWVVVENPCF--YGALQALerlrLKALSIP 219
Cdd:PTZ00377 115 AGYPFVRKAVAA-FIERrdGVPKDPSDIFLTDGASSGIKLLLQLLIGdPSDGVMIPIPQYplYSAAITL----LGGKQVP 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 220 TDVKE----GIDLMALEQALQEYPVKA----CWLMTNSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREK 291
Cdd:PTZ00377 190 YYLDEekgwSLDQEELEEAYEQAVRNGitprALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEK 269
|
.
gi 446683342 292 P 292
Cdd:PTZ00377 270 P 270
|
|
| PRK08354 |
PRK08354 |
putative aminotransferase; Provisional |
169-325 |
2.66e-04 |
|
putative aminotransferase; Provisional
Pssm-ID: 169399 Cd Length: 311 Bit Score: 42.79 E-value: 2.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 169 EIVITAGALEALNLsLQAVTAPGDWVVVENPCfYGalqALERL-RLKALSIptdVKEGIDLMALEQALQEYPVKacwLMT 247
Cdd:PRK08354 56 PIVITAGITEALYL-IGILALRDRKVIIPRHT-YG---EYERVaRFFAARI---IKGPNDPEKLEELVERNSVV---FFC 124
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446683342 248 NSQNPLGFTLSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKPlpakawDRDDTVLhCSSFSKCL-VPGFRIGWVAG 325
Cdd:PRK08354 125 NPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKPESP------EGENIIK-LRTFTKSYgLPGIRVGYVKG 196
|
|
| PLN02368 |
PLN02368 |
alanine transaminase |
114-292 |
8.38e-04 |
|
alanine transaminase
Pssm-ID: 177996 [Multi-domain] Cd Length: 407 Bit Score: 41.71 E-value: 8.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 114 DPR---LFPLPQLNRS---LAQVSKTATAMSVIENLPPGNAELRYAIARRyaqQGITVSPDEIVITAGALEALNLSLQAV 187
Cdd:PLN02368 74 DPNvglLFPADAIARAkhyLSLTSGGLGAYSDSRGLPGVRKEVAEFIERR---DGYPSDPELIFLTDGASKGVMQILNAV 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 188 T-APGDWVVVENPCF--YGALQALerlrLKALSIPTDVKE----GIDLMALEQALQEYPVKA----CWLMTNSQNPLGFT 256
Cdd:PLN02368 151 IrGEKDGVLVPVPQYplYSATISL----LGGTLVPYYLEEsenwGLDVNNLRQSVAQARSKGitvrAMVIINPGNPTGQC 226
|
170 180 190
....*....|....*....|....*....|....*.
gi 446683342 257 LSAEKKARLVALLTHHNVMLIEDDVYSELYFGREKP 292
Cdd:PLN02368 227 LSEANLREILKFCYQERLVLLGDEVYQQNIYQDERP 262
|
|
| AAT_I |
cd01494 |
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP) ... |
155-282 |
9.97e-04 |
|
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).
Pssm-ID: 99742 [Multi-domain] Cd Length: 170 Bit Score: 40.06 E-value: 9.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 155 ARRYAQQGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQ-ALERLRLKALSIPTDVKE--GIDLMAL 231
Cdd:cd01494 5 LEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYWvAAELAGAKPVPVPVDDAGygGLDVAIL 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 446683342 232 EQALQEYPVKACWLMTNSQNPLGFTLSAEkkarLVALLTHHNVMLIEDDVY 282
Cdd:cd01494 85 EELKAKPNVALIVITPNTTSGGVLVPLKE----IRKIAKEYGILLLVDAAS 131
|
|
| PRK09265 |
PRK09265 |
aminotransferase AlaT; Validated |
139-350 |
7.85e-03 |
|
aminotransferase AlaT; Validated
Pssm-ID: 181738 Cd Length: 404 Bit Score: 38.64 E-value: 7.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 139 VIENLPpgNAE----------LRYAIARRYAQQGIT-VSPDEIVITAGALEALNLSLQAVTAPGDWVVVENP-------- 199
Cdd:PRK09265 58 VIRNLP--TAQgysdskglfsARKAIMQYYQQKGIPdVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPdyplwtaa 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 200 ------------C-----FYGALQALERL---RLKALSIptdvkegidlmaleqalqeypvkacwlmTNSQNPLGFTLSA 259
Cdd:PRK09265 136 vslsggkpvhylCdeeagWFPDLDDIRSKitpRTKAIVI----------------------------INPNNPTGAVYSK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446683342 260 EKKARLVALLTHHNVMLIEDDVYSE-LYFGREK-PLPAKAwdrdDTVLhCSSF---SKCL-VPGFRIGW--VAGG-SHAR 330
Cdd:PRK09265 188 ELLEEIVEIARQHNLIIFADEIYDKiLYDGAVHiSIASLA----PDLL-CVTFnglSKAYrVAGFRVGWmvLSGPkKHAK 262
|
250 260
....*....|....*....|...
gi 446683342 331 Q-IQRLQLMST--LSTSSPMQLA 350
Cdd:PRK09265 263 GyIEGLDMLASmrLCANVPAQHA 285
|
|
|