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Conserved domains on  [gi|446686038|ref|WP_000763384|]
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TraR/DksA family transcriptional regulator [Escherichia coli]

Protein Classification

TraR/DksA family transcriptional regulator( domain architecture ID 10009661)

TraR/DksA family transcriptional regulator similar to Escherichia virus uncharacterized 8.5 kDa protein in gpA 5'region

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PHA00080 PHA00080
DksA-like zinc finger domain containing protein
 2-69 3.49e-26

DksA-like zinc finger domain containing protein


:

Pssm-ID: 222775  Cd Length: 72  Bit Score: 90.58  E-value: 3.49e-26
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446686038  2 ADIIDSASEIEELQRNTAIKMRRLNYQTVSATHCCECGDPIDERRRLAVQGCRTCASCQEEIELKNKQ 69
Cdd:PHA00080  1 ADIIDRAAEIEELQRERALANRRNKYQAPSATHCEECGDPIPEARREAVPGCRTCVSCQEILELKSYQ 68
 
Name Accession Description Interval E-value
PHA00080 PHA00080
DksA-like zinc finger domain containing protein
 2-69 3.49e-26

DksA-like zinc finger domain containing protein


Pssm-ID: 222775  Cd Length: 72  Bit Score: 90.58  E-value: 3.49e-26
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446686038  2 ADIIDSASEIEELQRNTAIKMRRLNYQTVSATHCCECGDPIDERRRLAVQGCRTCASCQEEIELKNKQ 69
Cdd:PHA00080  1 ADIIDRAAEIEELQRERALANRRNKYQAPSATHCEECGDPIPEARREAVPGCRTCVSCQEILELKSYQ 68
C4_traR_proteo TIGR02419
phage/conjugal plasmid C-4 type zinc finger protein, TraR family; Members of this family are ...
 3-64 1.29e-10

phage/conjugal plasmid C-4 type zinc finger protein, TraR family; Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 274123  Cd Length: 63  Bit Score: 51.24  E-value: 1.29e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446686038   3 DIIDSASEIEELQRNTAIKMRRLNYQTVSATHCCE-CGDPIDERRRLAVQGCRTCASCQEEIE 64
Cdd:TIGR02419  1 DEFDRAQELEEELLERALAAARAKKVIGPSLRECEdCGEPIPEARREALPGVTRCVSCQEILE 63
zf-dskA_traR pfam01258
Prokaryotic dksA/traR C4-type zinc finger;
34-64 2.12e-05

Prokaryotic dksA/traR C4-type zinc finger;


Pssm-ID: 426162 [Multi-domain]  Cd Length: 36  Bit Score: 37.26  E-value: 2.12e-05
                         10        20        30
                 ....*....|....*....|....*....|.
gi 446686038  34 HCCECGDPIDERRRLAVQGCRTCASCQEEIE 64
Cdd:pfam01258  5 SCEDCGEPIPEARLRAVPGARLCIECQEKYE 35
 
Name Accession Description Interval E-value
PHA00080 PHA00080
DksA-like zinc finger domain containing protein
 2-69 3.49e-26

DksA-like zinc finger domain containing protein


Pssm-ID: 222775  Cd Length: 72  Bit Score: 90.58  E-value: 3.49e-26
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446686038  2 ADIIDSASEIEELQRNTAIKMRRLNYQTVSATHCCECGDPIDERRRLAVQGCRTCASCQEEIELKNKQ 69
Cdd:PHA00080  1 ADIIDRAAEIEELQRERALANRRNKYQAPSATHCEECGDPIPEARREAVPGCRTCVSCQEILELKSYQ 68
PRK11019 PRK11019
DksA/TraR family C4-type zinc finger protein;
3-68 1.11e-12

DksA/TraR family C4-type zinc finger protein;


Pssm-ID: 182903  Cd Length: 88  Bit Score: 56.80  E-value: 1.11e-12
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446686038  3 DIIDSASEiEELQRntaikMRRLNYQTVSATHCCECGDPIDERRRLAVQGCRTCASCQEEIELKNK 68
Cdd:PRK11019 13 EQIDATVE-DAIAR-----ARSELPRGESLTECEECGEPIPEARRKAIPGVRLCVACQQEKDLQQA 72
C4_traR_proteo TIGR02419
phage/conjugal plasmid C-4 type zinc finger protein, TraR family; Members of this family are ...
 3-64 1.29e-10

phage/conjugal plasmid C-4 type zinc finger protein, TraR family; Members of this family are putative C4-type zinc finger proteins found almost exclusively in prophage regions, actual phage, or conjugal transfer regions of the Proteobactia. This small protein (about 70 amino acids) appears homologous to but is smaller than DksA (DnaK suppressor protein), found to be critical for regulating transcription of ribosomal RNA. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 274123  Cd Length: 63  Bit Score: 51.24  E-value: 1.29e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446686038   3 DIIDSASEIEELQRNTAIKMRRLNYQTVSATHCCE-CGDPIDERRRLAVQGCRTCASCQEEIE 64
Cdd:TIGR02419  1 DEFDRAQELEEELLERALAAARAKKVIGPSLRECEdCGEPIPEARREALPGVTRCVSCQEILE 63
zf-dskA_traR pfam01258
Prokaryotic dksA/traR C4-type zinc finger;
34-64 2.12e-05

Prokaryotic dksA/traR C4-type zinc finger;


Pssm-ID: 426162 [Multi-domain]  Cd Length: 36  Bit Score: 37.26  E-value: 2.12e-05
                         10        20        30
                 ....*....|....*....|....*....|.
gi 446686038  34 HCCECGDPIDERRRLAVQGCRTCASCQEEIE 64
Cdd:pfam01258  5 SCEDCGEPIPEARLRAVPGARLCIECQEKYE 35
PRK13715 PRK13715
conjugal transfer protein TraR; Provisional
 1-69 2.99e-03

conjugal transfer protein TraR; Provisional


Pssm-ID: 184270  Cd Length: 73  Bit Score: 32.64  E-value: 2.99e-03
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446686038  1 MADIIDSASEIEELQRNTAIKMRR--LNYQTVSATHCCECGDPIDERRRLAVQGCRTCASCQEEIELKNKQ 69
Cdd:PRK13715  1 MSDEADEAYSVTEQLTMTGINRIRqkINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVECQAYQERQRKH 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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