|
Name |
Accession |
Description |
Interval |
E-value |
| DUF3300 |
pfam11737 |
Protein of unknown function (DUF3300); This hypothetical bacterial gene product has a long ... |
74-373 |
1.56e-95 |
|
Protein of unknown function (DUF3300); This hypothetical bacterial gene product has a long hydrophobic segment and is thus likely to be a membrane protein.
Pssm-ID: 463336 Cd Length: 229 Bit Score: 291.50 E-value: 1.56e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 74 STAQIDQWVAPVALYPDSLLSQVLMASTYPANVAQAVQWSHDNPLKQGDAAIQAVSDQPWDASVKSLVAFPQLMALMGEN 153
Cdd:pfam11737 1 SQAQLDQLLAPIALYPDSLLSQVLMASTYPLEVVEAARWSRQNPGLKGDALVKAVEDQPWDPSVKALVAFPDVLAMMSED 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 154 PQWVQNLGDAFLAQPQDVMDSVQRLRQLAQQTGSLKSSTEQKIIATtkkvvpvnqpanapatqsntvstsspvvaepaPT 233
Cdd:pfam11737 81 LDWTQKLGDAFLAQEDDVMDAVQRLRQKAYAAGNLKSNDQQKVTVE--------------------------------QT 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 234 VITIEPANPDVVYIPNYNPNVVYGSWANTAYPPVYLPPPAGEPFVDSFVRGFGYSmgvaTTYALFSSIdwddddhdhhhh 313
Cdd:pfam11737 129 TIVIEPADPQVVYVPYYDPRVVYGPWWYPAYPPYYWPPPPGYAPGIYFGPGIAIG----AAGFLFGGF------------ 192
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 314 ddddyhhhdgghrdgnDWqHNGDnINIDVNNFNRITGEHLtdknmaWRHNPNYRNGVTYH 373
Cdd:pfam11737 193 ----------------DW-GNHD-VNINVNRNNNINRNHR------RSRRVVSAGANRWQ 228
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
391-585 |
2.59e-07 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 53.75 E-value: 2.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 391 SATQLPAPTRDSQRHAAASQFQQRTHAAPVITRDTQRQAAAQRfneaehygsyddfRDFSRRQPLTQQQKDAARQRYQSA 470
Cdd:PRK12678 91 EQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRER-------------GEAARRGAARKAGEGGEQPATEAR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 471 SPEQRQAVREKIQANPQNQQRREAARQRIQSASPEQRQAVREKMQTNPQNQQQRDAARQRIQSASPEQRQVFREKVQESR 550
Cdd:PRK12678 158 ADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRD 237
|
170 180 190
....*....|....*....|....*....|....*
gi 446707064 551 PQRLNDSNHTARLNNEQRSAVRERLSERGARRLER 585
Cdd:PRK12678 238 ARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRR 272
|
|
| DUF3106 |
pfam11304 |
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated ... |
455-544 |
7.10e-06 |
|
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Pssm-ID: 463257 [Multi-domain] Cd Length: 104 Bit Score: 44.90 E-value: 7.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 455 LTQQQKDAA---RQRYQSASPEQRQAVREKIQA----NPQNQQRREAARQRIQSASPEQRQAVREKMQT----NPQNQQQ 523
Cdd:pfam11304 4 LSPAQRQALaplAERWNSLPPEQRRKWLEIAERypkmTPEEQQRLQERMTRWARLTPEQRRQARENYQQlrqlPPEQREA 83
|
90 100
....*....|....*....|.
gi 446707064 524 RDAARQRIQSASPEQRQVFRE 544
Cdd:pfam11304 84 LRARWEAYQALPPEQRQALAA 104
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
33-540 |
8.54e-06 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 48.93 E-value: 8.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 33 TVEAPVEAQSTQQTAPDISAVTLPATVSAPPVtpAVVKSAFSTAQIDQWVAPVALYPDSLLSQVlmastyPANVAQAVQW 112
Cdd:PRK10263 315 PITEPVAVAAAATTATQSWAAPVEPVTQTPPV--ASVDVPPAQPTVAWQPVPGPQTGEPVIAPA------PEGYPQQSQY 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 113 shdnplkqgdAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDSVQRLRQLAQQTGSLKSST 192
Cdd:PRK10263 387 ----------AQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTF 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 193 EQKiiATTKKVVPVNQPANAPATQSNTVSTSSPVVAEPAPTVITIEPANPDVVYIPNYNPNVV-----YGSWantaYPPV 267
Cdd:PRK10263 457 APQ--STYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRArereqLAAW----YQPI 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 268 ylPPPAGEPF-VDSFVRGFGYSM-----GVATTYALFSSIDWDDDDHDHHHHDDDDYHHHDGGhrdGNDWQHNGDNINID 341
Cdd:PRK10263 531 --PEPVKEPEpIKSSLKAPSVAAvppveAAAAVSPLASGVKKATLATGAAATVAAPVFSLANS---GGPRPQVKEGIGPQ 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 342 VNNFNRI---------------TGEHLTDKNMAWRHNPNYRNGVTYHDQD--------MAKRFHQTDVNGGMSATQLPAP 398
Cdd:PRK10263 606 LPRPKRIrvptrrelasygiklPSQRAAEEKAREAQRNQYDSGDQYNDDEidamqqdeLARQFAQTQQQRYGEQYQHDVP 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 399 TRDSQRHAAASQFQQRTHAAPVITRDTQRQ-AAAQRFNEAE-HYGSYDDFRDFSRRQPL---------TQQQKDAARQRY 467
Cdd:PRK10263 686 VNAEDADAAAEAELARQFAQTQQQRYSGEQpAGANPFSLDDfEFSPMKALLDDGPHEPLftpivepvqQPQQPVAPQQQY 765
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446707064 468 QS-----ASPEQRQAVREKIQANPQNQQRREAARQRIQSASPEQRQAVREKMQTNPQNQQQRDAARQRIQSASPEQRQ 540
Cdd:PRK10263 766 QQpqqpvAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQD 843
|
|
| CpxP |
COG3678 |
Periplasmic chaperone Spy, Spy/CpxP family [Posttranslational modification, protein turnover, ... |
455-553 |
6.13e-05 |
|
Periplasmic chaperone Spy, Spy/CpxP family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442894 [Multi-domain] Cd Length: 141 Bit Score: 43.04 E-value: 6.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 455 LTQQQKD---AARQRYQSASPEQRQavrekiqanpQNQQRREAARQRIQSASPEqRQAVREKMQTNPQNQQQRDAARQRI 531
Cdd:COG3678 45 LTEEQRQqirAIRQQYRKQMRALRQ----------QLREAREELRALLAADKFD-EAAVRALADKIAALRAQLAVERAEA 113
|
90 100
....*....|....*....|....*..
gi 446707064 532 QSA-----SPEQRQVFREKVQESRPQR 553
Cdd:COG3678 114 RNQmykvlTPEQRAKLAELMQERGEKH 140
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
453-548 |
7.34e-04 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 41.79 E-value: 7.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 453 QPLTQQQKDAARQRYQSASPEQRQAVREKIQAnpQNQQRREAARQRIQsaspEQRQAVREKMQTnpQNQQQRDAARQRIQ 532
Cdd:cd16269 191 QALTEKEKEIEAERAKAEAAEQERKLLEEQQR--ELEQKLEDQERSYE----EHLRQLKEKMEE--ERENLLKEQERALE 262
|
90 100
....*....|....*....|
gi 446707064 533 SASPEQR----QVFREKVQE 548
Cdd:cd16269 263 SKLKEQEalleEGFKEQAEL 282
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
398-574 |
6.94e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.57 E-value: 6.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 398 PTRDSQRHAAasqfQQRTHAAPVITRDTQRQAAAQRFNEAEHYGSyddfRDFSRRQPLTQQQKDAARQRyQSASPEQRQA 477
Cdd:TIGR00618 284 ERINRARKAA----PLAAHIKAVTQIEQQAQRIHTELQSKMRSRA----KLLMKRAAHVKQQSSIEEQR-RLLQTLHSQE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 478 VREKIQANPQN-------------------QQRREAARQRIQSASPEQRQAVREKMQTNPQNQQQRD--------AARQR 530
Cdd:TIGR00618 355 IHIRDAHEVATsireiscqqhtltqhihtlQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDlqgqlahaKKQQE 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 446707064 531 IQSASPEQRQVFREKVQESRPQRLndsnhtaRLNNEQRSAVRER 574
Cdd:TIGR00618 435 LQQRYAELCAAAITCTAQCEKLEK-------IHLQESAQSLKER 471
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| DUF3300 |
pfam11737 |
Protein of unknown function (DUF3300); This hypothetical bacterial gene product has a long ... |
74-373 |
1.56e-95 |
|
Protein of unknown function (DUF3300); This hypothetical bacterial gene product has a long hydrophobic segment and is thus likely to be a membrane protein.
Pssm-ID: 463336 Cd Length: 229 Bit Score: 291.50 E-value: 1.56e-95
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 74 STAQIDQWVAPVALYPDSLLSQVLMASTYPANVAQAVQWSHDNPLKQGDAAIQAVSDQPWDASVKSLVAFPQLMALMGEN 153
Cdd:pfam11737 1 SQAQLDQLLAPIALYPDSLLSQVLMASTYPLEVVEAARWSRQNPGLKGDALVKAVEDQPWDPSVKALVAFPDVLAMMSED 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 154 PQWVQNLGDAFLAQPQDVMDSVQRLRQLAQQTGSLKSSTEQKIIATtkkvvpvnqpanapatqsntvstsspvvaepaPT 233
Cdd:pfam11737 81 LDWTQKLGDAFLAQEDDVMDAVQRLRQKAYAAGNLKSNDQQKVTVE--------------------------------QT 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 234 VITIEPANPDVVYIPNYNPNVVYGSWANTAYPPVYLPPPAGEPFVDSFVRGFGYSmgvaTTYALFSSIdwddddhdhhhh 313
Cdd:pfam11737 129 TIVIEPADPQVVYVPYYDPRVVYGPWWYPAYPPYYWPPPPGYAPGIYFGPGIAIG----AAGFLFGGF------------ 192
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 314 ddddyhhhdgghrdgnDWqHNGDnINIDVNNFNRITGEHLtdknmaWRHNPNYRNGVTYH 373
Cdd:pfam11737 193 ----------------DW-GNHD-VNINVNRNNNINRNHR------RSRRVVSAGANRWQ 228
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
391-585 |
2.59e-07 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 53.75 E-value: 2.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 391 SATQLPAPTRDSQRHAAASQFQQRTHAAPVITRDTQRQAAAQRfneaehygsyddfRDFSRRQPLTQQQKDAARQRYQSA 470
Cdd:PRK12678 91 EQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRER-------------GEAARRGAARKAGEGGEQPATEAR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 471 SPEQRQAVREKIQANPQNQQRREAARQRIQSASPEQRQAVREKMQTNPQNQQQRDAARQRIQSASPEQRQVFREKVQESR 550
Cdd:PRK12678 158 ADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRD 237
|
170 180 190
....*....|....*....|....*....|....*
gi 446707064 551 PQRLNDSNHTARLNNEQRSAVRERLSERGARRLER 585
Cdd:PRK12678 238 ARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRR 272
|
|
| DUF3106 |
pfam11304 |
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated ... |
455-544 |
7.10e-06 |
|
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Pssm-ID: 463257 [Multi-domain] Cd Length: 104 Bit Score: 44.90 E-value: 7.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 455 LTQQQKDAA---RQRYQSASPEQRQAVREKIQA----NPQNQQRREAARQRIQSASPEQRQAVREKMQT----NPQNQQQ 523
Cdd:pfam11304 4 LSPAQRQALaplAERWNSLPPEQRRKWLEIAERypkmTPEEQQRLQERMTRWARLTPEQRRQARENYQQlrqlPPEQREA 83
|
90 100
....*....|....*....|.
gi 446707064 524 RDAARQRIQSASPEQRQVFRE 544
Cdd:pfam11304 84 LRARWEAYQALPPEQRQALAA 104
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
33-540 |
8.54e-06 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 48.93 E-value: 8.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 33 TVEAPVEAQSTQQTAPDISAVTLPATVSAPPVtpAVVKSAFSTAQIDQWVAPVALYPDSLLSQVlmastyPANVAQAVQW 112
Cdd:PRK10263 315 PITEPVAVAAAATTATQSWAAPVEPVTQTPPV--ASVDVPPAQPTVAWQPVPGPQTGEPVIAPA------PEGYPQQSQY 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 113 shdnplkqgdAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDSVQRLRQLAQQTGSLKSST 192
Cdd:PRK10263 387 ----------AQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTF 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 193 EQKiiATTKKVVPVNQPANAPATQSNTVSTSSPVVAEPAPTVITIEPANPDVVYIPNYNPNVV-----YGSWantaYPPV 267
Cdd:PRK10263 457 APQ--STYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRArereqLAAW----YQPI 530
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 268 ylPPPAGEPF-VDSFVRGFGYSM-----GVATTYALFSSIDWDDDDHDHHHHDDDDYHHHDGGhrdGNDWQHNGDNINID 341
Cdd:PRK10263 531 --PEPVKEPEpIKSSLKAPSVAAvppveAAAAVSPLASGVKKATLATGAAATVAAPVFSLANS---GGPRPQVKEGIGPQ 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 342 VNNFNRI---------------TGEHLTDKNMAWRHNPNYRNGVTYHDQD--------MAKRFHQTDVNGGMSATQLPAP 398
Cdd:PRK10263 606 LPRPKRIrvptrrelasygiklPSQRAAEEKAREAQRNQYDSGDQYNDDEidamqqdeLARQFAQTQQQRYGEQYQHDVP 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 399 TRDSQRHAAASQFQQRTHAAPVITRDTQRQ-AAAQRFNEAE-HYGSYDDFRDFSRRQPL---------TQQQKDAARQRY 467
Cdd:PRK10263 686 VNAEDADAAAEAELARQFAQTQQQRYSGEQpAGANPFSLDDfEFSPMKALLDDGPHEPLftpivepvqQPQQPVAPQQQY 765
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446707064 468 QS-----ASPEQRQAVREKIQANPQNQQRREAARQRIQSASPEQRQAVREKMQTNPQNQQQRDAARQRIQSASPEQRQ 540
Cdd:PRK10263 766 QQpqqpvAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQD 843
|
|
| CpxP |
COG3678 |
Periplasmic chaperone Spy, Spy/CpxP family [Posttranslational modification, protein turnover, ... |
455-553 |
6.13e-05 |
|
Periplasmic chaperone Spy, Spy/CpxP family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442894 [Multi-domain] Cd Length: 141 Bit Score: 43.04 E-value: 6.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 455 LTQQQKD---AARQRYQSASPEQRQavrekiqanpQNQQRREAARQRIQSASPEqRQAVREKMQTNPQNQQQRDAARQRI 531
Cdd:COG3678 45 LTEEQRQqirAIRQQYRKQMRALRQ----------QLREAREELRALLAADKFD-EAAVRALADKIAALRAQLAVERAEA 113
|
90 100
....*....|....*....|....*..
gi 446707064 532 QSA-----SPEQRQVFREKVQESRPQR 553
Cdd:COG3678 114 RNQmykvlTPEQRAKLAELMQERGEKH 140
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
403-585 |
1.08e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 403 QRHAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAEhygsyDDFRDFSRRQPLTQQQKDAARQRYQSASPEQRQAVREKI 482
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQ-----AEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 483 QAnpqnQQRREAARQRIQSASPEQRQAVREKMQTNPQNQQQRDAARQRIQSASPEQRQVFREKVQESRPQRlndsnhtAR 562
Cdd:COG1196 327 EL----EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR-------AA 395
|
170 180
....*....|....*....|...
gi 446707064 563 LNNEQRSAVRERLSERGARRLER 585
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLER 418
|
|
| DUF3106 |
pfam11304 |
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated ... |
467-573 |
1.13e-04 |
|
Protein of unknown function (DUF3106); Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Pssm-ID: 463257 [Multi-domain] Cd Length: 104 Bit Score: 41.43 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 467 YQSASPEQRQAVR----EKIQANPQNQQRREAARQRIQSASPEQRQAVREKMQTNPQ-NQQQRDAARQRIQSA---SPEQ 538
Cdd:pfam11304 1 WSELSPAQRQALAplaeRWNSLPPEQRRKWLEIAERYPKMTPEEQQRLQERMTRWARlTPEQRRQARENYQQLrqlPPEQ 80
|
90 100 110
....*....|....*....|....*....|....*
gi 446707064 539 RQVFREKVQESRpqrlndsnhtaRLNNEQRSAVRE 573
Cdd:pfam11304 81 REALRARWEAYQ-----------ALPPEQRQALAA 104
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
451-582 |
1.83e-04 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 43.87 E-value: 1.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 451 RRQPLTQQQKDAARQRYQSASPEQRQAVREKIQANPQNQQRREAARQRIQSASPEQRQAVREKMQtnpQNQQQRDAARQR 530
Cdd:pfam15558 39 RRDQKRQETLERERRLLLQQSQEQWQAEKEQRKARLGREERRRADRREKQVIEKESRWREQAEDQ---ENQRQEKLERAR 115
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 446707064 531 IQSASPEQRQVFREKVQESRPQRLNDSNHTARLNNEQRSAVRERLSERGARR 582
Cdd:pfam15558 116 QEAEQRKQCQEQRLKEKEEELQALREQNSLQLQERLEEACHKRQLKEREEQK 167
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
412-584 |
3.02e-04 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 43.79 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 412 QQRTHAAP---VITRDTQRQAAAQRFNEAehygsyddfRDFSRRQPLTQQQKDAARQ-RYQSASPEQRQAVREKIQanpQ 487
Cdd:pfam15709 313 EERSEEDPskaLLEKREQEKASRDRLRAE---------RAEMRRLEVERKRREQEEQrRLQQEQLERAEKMREELE---L 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 488 NQQRR-EAARQRIQSASPE-QRQAVREKMQtnpqnQQQRDAARQRIQsaspEQRQVFREKVQESRPQRLNDSNHTARLNN 565
Cdd:pfam15709 381 EQQRRfEEIRLRKQRLEEErQRQEEEERKQ-----RLQLQAAQERAR----QQQEEFRRKLQELQRKKQQEEAERAEAEK 451
|
170
....*....|....*....
gi 446707064 566 EQRSAVRERLSERGARRLE 584
Cdd:pfam15709 452 QRQKELEMQLAEEQKRLME 470
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
402-550 |
6.18e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 6.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 402 SQRHAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAEhygsyddfrdfsrrqpltqQQKDAARQRYQSASP------EQR 475
Cdd:COG3206 240 ARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELE-------------------AELAELSARYTPNHPdvialrAQI 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 476 QAVREKIQANPQN-----QQRREAARQRIQSASpEQRQAVREKMQTNPQNQQQRDAARQRIQSASpEQRQVFREKVQESR 550
Cdd:COG3206 301 AALRAQLQQEAQRilaslEAELEALQAREASLQ-AQLAQLEARLAELPELEAELRRLEREVEVAR-ELYESLLQRLEEAR 378
|
|
| GBP_C |
cd16269 |
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ... |
453-548 |
7.34e-04 |
|
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.
Pssm-ID: 293879 [Multi-domain] Cd Length: 291 Bit Score: 41.79 E-value: 7.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 453 QPLTQQQKDAARQRYQSASPEQRQAVREKIQAnpQNQQRREAARQRIQsaspEQRQAVREKMQTnpQNQQQRDAARQRIQ 532
Cdd:cd16269 191 QALTEKEKEIEAERAKAEAAEQERKLLEEQQR--ELEQKLEDQERSYE----EHLRQLKEKMEE--ERENLLKEQERALE 262
|
90 100
....*....|....*....|
gi 446707064 533 SASPEQR----QVFREKVQE 548
Cdd:cd16269 263 SKLKEQEalleEGFKEQAEL 282
|
|
| PRK12678 |
PRK12678 |
transcription termination factor Rho; Provisional |
407-582 |
1.27e-03 |
|
transcription termination factor Rho; Provisional
Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 41.81 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 407 AASQFQQRTHAAPVITRDTQRQAAAQRFNEAEHYgsyddfRDFSRRQPLTQQQKDAARQRYQSASPEQRQAVREKIQANP 486
Cdd:PRK12678 53 AAIKEARGGGAAAAAATPAAPAAAARRAARAAAA------ARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 487 QNQQRREAARQRiqsaSPEQRQAVREKMQTNPQNQQQRDAARQRIQSASPEQRQVFREKVQESRPQRLNDSNHTARLNNE 566
Cdd:PRK12678 127 ARERRERGEAAR----RGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDD 202
|
170
....*....|....*.
gi 446707064 567 QRSAVRERLSERGARR 582
Cdd:PRK12678 203 RDRRDRREQGDRREER 218
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
424-578 |
1.92e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 424 DTQRQAAAQRFNEAEHygSYDDFRDFSRRQPLTQQQKDAARQRyqSASPEQRQAVREKIQANPQNQQRREAARQRIQSAs 503
Cdd:COG4717 101 EEELEELEAELEELRE--ELEKLEKLLQLLPLYQELEALEAEL--AELPERLEELEERLEELRELEEELEELEAELAEL- 175
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446707064 504 peQRQAVREKMQTNPQNQQQRDAARQRIQSASpEQRQVFREKVQESRpQRLNDsnHTARLNNEQRSAVRERLSER 578
Cdd:COG4717 176 --QEELEELLEQLSLATEEELQDLAEELEELQ-QRLAELEEELEEAQ-EELEE--LEEELEQLENELEAAALEER 244
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
423-583 |
2.04e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 2.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 423 RDTQRQAAAQRFNEAEHYGSYDDFRDFSRRQPLTQQQKDAARQRYQSA------SPEQRQAVREKIQANPQNQQRREAAR 496
Cdd:pfam17380 354 RQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAArkvkilEEERQRKIQQQKVEMEQIRAEQEEAR 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 497 QRIQSASPEQRQAVREKMQTNPQN-QQQRDAARQRiqsaSPEQRQVFREKVQESRPQRLNDSNHTARLNNEQRSAVRERL 575
Cdd:pfam17380 434 QREVRRLEEERAREMERVRLEEQErQQQVERLRQQ----EEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMI 509
|
....*...
gi 446707064 576 SERGARRL 583
Cdd:pfam17380 510 EEERKRKL 517
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
406-533 |
2.37e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.09 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 406 AAASQFQQRTHAAPVITRDTQRQAAAQRFNEA-EHYGSYDDFRDfsRRQPLTQQQKDAaRQRYQsaspEQRQAVREKIQA 484
Cdd:COG3096 469 AARRQFEKAYELVCKIAGEVERSQAWQTARELlRRYRSQQALAQ--RLQQLRAQLAEL-EQRLR----QQQNAERLLEEF 541
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 446707064 485 NPQNQQRREAA----------RQRIQSASPEQRQAVREKMQTnpqnQQQRDAARQRIQS 533
Cdd:COG3096 542 CQRIGQQLDAAeeleellaelEAQLEELEEQAAEAVEQRSEL----RQQLEQLRARIKE 596
|
|
| PRK10927 |
PRK10927 |
cell division protein FtsN; |
451-530 |
3.34e-03 |
|
cell division protein FtsN;
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 40.05 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 451 RRQPLTQQQKDAARQRYQ-------SASPEQRQAVREKIQANPQNQQRREAARQRIQSASPEQRQAVREKMQTNP-QNQQ 522
Cdd:PRK10927 118 QRQLLEQMQADMRQQPTQlvevpwnEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQaQPRQ 197
|
....*...
gi 446707064 523 QRDAARQR 530
Cdd:PRK10927 198 SKPASTQQ 205
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
458-582 |
3.51e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 3.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 458 QQKDAARQRYQSASpEQRQAVREKIQANPQNQQRR-------------------EAARQRIQSASPEQRQAvREKMQtnp 518
Cdd:COG3096 934 EQFEQLQADYLQAK-EQQRRLKQQIFALSEVVQRRphfsyedavgllgensdlnEKLRARLEQAEEARREA-REQLR--- 1008
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446707064 519 QNQQQRDAARQRIQSASpEQRQVFREKVQESRpQRLNDSNHTARLNNEQRSAVR-----ERLSERGARR 582
Cdd:COG3096 1009 QAQAQYSQYNQVLASLK-SSRDAKQQTLQELE-QELEELGVQADAEAEERARIRrdelhEELSQNRSRR 1075
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
451-534 |
4.56e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 39.79 E-value: 4.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 451 RRQPLTQQQKDAARQRYQSASPEQRQAVREKIQANPQNQQRREAARQriqsASPEQRQAVREKMQTNPQNQQQRDAARQR 530
Cdd:PRK09510 80 QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQ----AALKQKQAEEAAAKAAAAAKAKAEAEAKR 155
|
....
gi 446707064 531 IQSA 534
Cdd:PRK09510 156 AAAA 159
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
447-585 |
5.75e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 39.72 E-value: 5.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 447 RDFSRRQPLTQQQK--DAARQRYQSASPEQRQAVREK---IQANPQNQQRREAARQRIQSASPEQRQaVREKMQTNPQNQ 521
Cdd:pfam17380 310 REVERRRKLEEAEKarQAEMDRQAAIYAEQERMAMERereLERIRQEERKRELERIRQEEIAMEISR-MRELERLQMERQ 388
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 446707064 522 QQRDAARQRIQSAspEQRQVFREKVQESRPQRLNDSNHTARLNNEQRSAVRERLSERGARRLER 585
Cdd:pfam17380 389 QKNERVRQELEAA--RKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMER 450
|
|
| PRK12757 |
PRK12757 |
cell division protein FtsN; Provisional |
471-552 |
5.83e-03 |
|
cell division protein FtsN; Provisional
Pssm-ID: 237191 [Multi-domain] Cd Length: 256 Bit Score: 38.87 E-value: 5.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 471 SPEQRQAVrEKIQAN-----------PQNQQRREAARQRIQSaspeQRQAVREKMQTNPQNQQQRDAARQRIQSASPEQR 539
Cdd:PRK12757 81 TDEQRQLL-EQMQADmrqqptqlsevPYNEQTPQVPRSTVQI----QQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTP 155
|
90
....*....|...
gi 446707064 540 QvfREKVQESRPQ 552
Cdd:PRK12757 156 A--PVRTQPAAPV 166
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
398-574 |
6.94e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.57 E-value: 6.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 398 PTRDSQRHAAasqfQQRTHAAPVITRDTQRQAAAQRFNEAEHYGSyddfRDFSRRQPLTQQQKDAARQRyQSASPEQRQA 477
Cdd:TIGR00618 284 ERINRARKAA----PLAAHIKAVTQIEQQAQRIHTELQSKMRSRA----KLLMKRAAHVKQQSSIEEQR-RLLQTLHSQE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 478 VREKIQANPQN-------------------QQRREAARQRIQSASPEQRQAVREKMQTNPQNQQQRD--------AARQR 530
Cdd:TIGR00618 355 IHIRDAHEVATsireiscqqhtltqhihtlQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDlqgqlahaKKQQE 434
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 446707064 531 IQSASPEQRQVFREKVQESRPQRLndsnhtaRLNNEQRSAVRER 574
Cdd:TIGR00618 435 LQQRYAELCAAAITCTAQCEKLEK-------IHLQESAQSLKER 471
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
451-552 |
8.63e-03 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 37.33 E-value: 8.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446707064 451 RRQPLTQQQKDAARQRYQSASPEQRQAVREKIQANPQNQQRREAARQRIQSASPEQRQAvrekmqtnpqnQQQRDAARQR 530
Cdd:pfam05672 41 ERLRKEELRRRAEEERARREEEARRLEEERRREEEERQRKAEEEAEEREQREQEEQERL-----------QKQKEEAEAK 109
|
90 100
....*....|....*....|..
gi 446707064 531 IQSASPEQRQVfREKVQESRPQ 552
Cdd:pfam05672 110 AREEAERQRQE-REKIMQQEEQ 130
|
|
| |
