NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446711531|ref|WP_000788877|]
View 

MULTISPECIES: replication protein P [Enterobacteriaceae]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Phage_lambda_P pfam06992
Replication protein P; This family consists of several Bacteriophage lambda replication ...
 39-198 9.47e-82

Replication protein P; This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.


:

Pssm-ID: 462061  Cd Length: 162  Bit Score: 241.47  E-value: 9.47e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446711531   39 IINGVFSQLLATFPASLAN-RDQNELNEIRRQWVLAFRENGITTMEQVNAGMRVARRQNRPFLPSPGQFVAWCREEASVI 117
Cdd:pfam06992   2 LVDRLFRQLKAIFPAWRQTlPSDEDESAAKRQWIAAFAENGITTREQLQAGMRIARRQESPFWPSPGQFIAWCKAGDSEA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446711531  118 AGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELVHMTARINRGEAIPE 197
Cdd:pfam06992  82 LGLPDLDELYREVMRYCANRGEYDSAEQYPWSSDAEYWLVTDLYRAMRATGLSEAELRKKAQKQLKAMAKRIAAGESIPE 161


                  .
gi 446711531  198 P 198
Cdd:pfam06992 162 P 162
 
Name Accession Description Interval E-value
Phage_lambda_P pfam06992
Replication protein P; This family consists of several Bacteriophage lambda replication ...
 39-198 9.47e-82

Replication protein P; This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.


Pssm-ID: 462061  Cd Length: 162  Bit Score: 241.47  E-value: 9.47e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446711531   39 IINGVFSQLLATFPASLAN-RDQNELNEIRRQWVLAFRENGITTMEQVNAGMRVARRQNRPFLPSPGQFVAWCREEASVI 117
Cdd:pfam06992   2 LVDRLFRQLKAIFPAWRQTlPSDEDESAAKRQWIAAFAENGITTREQLQAGMRIARRQESPFWPSPGQFIAWCKAGDSEA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446711531  118 AGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELVHMTARINRGEAIPE 197
Cdd:pfam06992  82 LGLPDLDELYREVMRYCANRGEYDSAEQYPWSSDAEYWLVTDLYRAMRATGLSEAELRKKAQKQLKAMAKRIAAGESIPE 161


                  .
gi 446711531  198 P 198
Cdd:pfam06992 162 P 162
 
Name Accession Description Interval E-value
Phage_lambda_P pfam06992
Replication protein P; This family consists of several Bacteriophage lambda replication ...
 39-198 9.47e-82

Replication protein P; This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.


Pssm-ID: 462061  Cd Length: 162  Bit Score: 241.47  E-value: 9.47e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446711531   39 IINGVFSQLLATFPASLAN-RDQNELNEIRRQWVLAFRENGITTMEQVNAGMRVARRQNRPFLPSPGQFVAWCREEASVI 117
Cdd:pfam06992   2 LVDRLFRQLKAIFPAWRQTlPSDEDESAAKRQWIAAFAENGITTREQLQAGMRIARRQESPFWPSPGQFIAWCKAGDSEA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446711531  118 AGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELVHMTARINRGEAIPE 197
Cdd:pfam06992  82 LGLPDLDELYREVMRYCANRGEYDSAEQYPWSSDAEYWLVTDLYRAMRATGLSEAELRKKAQKQLKAMAKRIAAGESIPE 161


                  .
gi 446711531  198 P 198
Cdd:pfam06992 162 P 162
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH