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Conserved domains on  [gi|446712441|ref|WP_000789785|]
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MULTISPECIES: DUF896 domain-containing protein [Bacillus]

Protein Classification

DUF896 domain-containing protein( domain architecture ID 10011696)

DUF896 domain-containing protein similar to Bacillus anthracis protein YnzC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK01631 PRK01631
hypothetical protein; Provisional
 1-76 4.25e-35

hypothetical protein; Provisional


:

Pssm-ID: 167247  Cd Length: 76  Bit Score: 113.67  E-value: 4.25e-35
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446712441  1 MKNILFRINELSKKEKTSGLTVDEKQEQQMLRQNYTKTFRGSLDSILLNTKIVDSNGFNVTPVALQDAQIRLKLSK 76
Cdd:PRK01631  1 MKNILFRINELSKKEKATGLTVDEKQEQQMLRQNYTQTFRGSLDSILLNTKIVDQNGLNVTPAALQDAQIRLKLSK 76
 
Name Accession Description Interval E-value
PRK01631 PRK01631
hypothetical protein; Provisional
 1-76 4.25e-35

hypothetical protein; Provisional


Pssm-ID: 167247  Cd Length: 76  Bit Score: 113.67  E-value: 4.25e-35
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446712441  1 MKNILFRINELSKKEKTSGLTVDEKQEQQMLRQNYTKTFRGSLDSILLNTKIVDSNGFNVTPVALQDAQIRLKLSK 76
Cdd:PRK01631  1 MKNILFRINELSKKEKATGLTVDEKQEQQMLRQNYTQTFRGSLDSILLNTKIVDQNGLNVTPAALQDAQIRLKLSK 76
DUF896 pfam05979
Bacterial protein of unknown function (DUF896); In B. subtilis, one small SOS response operon ...
 3-62 9.25e-25

Bacterial protein of unknown function (DUF896); In B. subtilis, one small SOS response operon under the control of LexA, the yneA operon, is comprised of three genes: yneA, yneB, and ynzC. This family consists of several short, hypothetical bacterial proteins of unknown function. These proteins are mainly found in gram-positive firmicutes. Structures show that the N-terminus is composed of two alpha helices forming a helix-loop-helix motif. The structure of ynzC from B. subtilis forms a trimeric complex. Structural modelling suggests this domain may bind nucleic acids. This family is also known as UPF0291.


Pssm-ID: 428703  Cd Length: 62  Bit Score: 87.17  E-value: 9.25e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446712441   3 NILFRINELSKKEKTSGLTVDEKQEQQMLRQNYTKTFRGSLDSILLNTKIVDSNGFNVTP 62
Cdd:pfam05979  1 EKIDRINELAKKAKTEGLTEEEKAEQKKLRKEYLKAFRASFKSQLENVKVVDPNGNDVTP 60
YnzC COG4224
Uncharacterized conserved protein YnzC, UPF0291/DUF896 family [Function unknown];
1-73 2.43e-24

Uncharacterized conserved protein YnzC, UPF0291/DUF896 family [Function unknown];


Pssm-ID: 443368  Cd Length: 75  Bit Score: 86.44  E-value: 2.43e-24
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446712441  1 MKNILFRINELSKKEKTSGLTVDEKQEQQMLRQNYTKTFRGSLDSILLNTKIVDSNGFNVTPVALQDAQIRLK 73
Cdd:COG4224   3 MKEKIDRINELAKKAKEEGLTEEEKKEQKKLRQEYLKNFRGSFRNQLENIKVVDPEGNDVTPEKLKEIQRKKG 75
 
Name Accession Description Interval E-value
PRK01631 PRK01631
hypothetical protein; Provisional
 1-76 4.25e-35

hypothetical protein; Provisional


Pssm-ID: 167247  Cd Length: 76  Bit Score: 113.67  E-value: 4.25e-35
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446712441  1 MKNILFRINELSKKEKTSGLTVDEKQEQQMLRQNYTKTFRGSLDSILLNTKIVDSNGFNVTPVALQDAQIRLKLSK 76
Cdd:PRK01631  1 MKNILFRINELSKKEKATGLTVDEKQEQQMLRQNYTQTFRGSLDSILLNTKIVDQNGLNVTPAALQDAQIRLKLSK 76
DUF896 pfam05979
Bacterial protein of unknown function (DUF896); In B. subtilis, one small SOS response operon ...
 3-62 9.25e-25

Bacterial protein of unknown function (DUF896); In B. subtilis, one small SOS response operon under the control of LexA, the yneA operon, is comprised of three genes: yneA, yneB, and ynzC. This family consists of several short, hypothetical bacterial proteins of unknown function. These proteins are mainly found in gram-positive firmicutes. Structures show that the N-terminus is composed of two alpha helices forming a helix-loop-helix motif. The structure of ynzC from B. subtilis forms a trimeric complex. Structural modelling suggests this domain may bind nucleic acids. This family is also known as UPF0291.


Pssm-ID: 428703  Cd Length: 62  Bit Score: 87.17  E-value: 9.25e-25
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446712441   3 NILFRINELSKKEKTSGLTVDEKQEQQMLRQNYTKTFRGSLDSILLNTKIVDSNGFNVTP 62
Cdd:pfam05979  1 EKIDRINELAKKAKTEGLTEEEKAEQKKLRKEYLKAFRASFKSQLENVKVVDPNGNDVTP 60
YnzC COG4224
Uncharacterized conserved protein YnzC, UPF0291/DUF896 family [Function unknown];
1-73 2.43e-24

Uncharacterized conserved protein YnzC, UPF0291/DUF896 family [Function unknown];


Pssm-ID: 443368  Cd Length: 75  Bit Score: 86.44  E-value: 2.43e-24
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446712441  1 MKNILFRINELSKKEKTSGLTVDEKQEQQMLRQNYTKTFRGSLDSILLNTKIVDSNGFNVTPVALQDAQIRLK 73
Cdd:COG4224   3 MKEKIDRINELAKKAKEEGLTEEEKKEQKKLRQEYLKNFRGSFRNQLENIKVVDPEGNDVTPEKLKEIQRKKG 75
PRK02539 PRK02539
DUF896 family protein;
7-69 1.09e-15

DUF896 family protein;


Pssm-ID: 179440  Cd Length: 85  Bit Score: 64.91  E-value: 1.09e-15
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446712441  7 RINELSKKEKTSGLTVDEKQEQQMLRQNYTKTFRGSLDSILLNTKIVDSNGFNVTPVALQDAQ 69
Cdd:PRK02539  8 RINELAKKKKTEGLTGEEKVEQAKLREEYIEGYRRSVRHHIEGIKIVDEEGNDVTPEKLRQVQ 70
PRK01546 PRK01546
hypothetical protein; Provisional
 7-66 6.86e-09

hypothetical protein; Provisional


Pssm-ID: 100891  Cd Length: 79  Bit Score: 47.33  E-value: 6.86e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446712441  7 RINELSKKEKTSGLTVDEKQEQQMLRQNYTKTFRGSLDSILLNTKIVDSNGFNVTPVALQ 66
Cdd:PRK01546  9 RINFLAKKAKAEGLTEEEQRERQSLREQYLKGFRQNMLNELKGIKVVNEQGTDVTPAKLK 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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