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Conserved domains on  [gi|446714178|ref|WP_000791509|]
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MULTISPECIES: DNA-binding protein [Bacillus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GldG super family cl43813
ABC-type uncharacterized transport system involved in gliding motility, auxiliary component ...
 44-139 5.64e-05

ABC-type uncharacterized transport system involved in gliding motility, auxiliary component [Cell motility];


The actual alignment was detected with superfamily member COG3225:

Pssm-ID: 442458 [Multi-domain]  Cd Length: 494  Bit Score: 45.70  E-value: 5.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446714178  44 VNQNNGKKVLFDNTHGQTAgtadwvIDGGFSDFGNGIAKNGYHVKE--LRKSTPItyedLKDYNVFIVPEANIPYKKSEQ 121
Cdd:COG3225  163 LTRTKKPKVGFLTGHGELS------LDRDLSDFVEALEEKGYDVAPlnLDSAAEI----PEDADVLVIAGPTKAFSEEEK 232

                         90
                 ....*....|....*...
gi 446714178 122 DAMLQYVKNGGSIFFIAD 139
Cdd:COG3225  233 YALDQYLMRGGKLLWLLD 250
 
Name Accession Description Interval E-value
GldG COG3225
ABC-type uncharacterized transport system involved in gliding motility, auxiliary component ...
 44-139 5.64e-05

ABC-type uncharacterized transport system involved in gliding motility, auxiliary component [Cell motility];


Pssm-ID: 442458 [Multi-domain]  Cd Length: 494  Bit Score: 45.70  E-value: 5.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446714178  44 VNQNNGKKVLFDNTHGQTAgtadwvIDGGFSDFGNGIAKNGYHVKE--LRKSTPItyedLKDYNVFIVPEANIPYKKSEQ 121
Cdd:COG3225  163 LTRTKKPKVGFLTGHGELS------LDRDLSDFVEALEEKGYDVAPlnLDSAAEI----PEDADVLVIAGPTKAFSEEEK 232

                         90
                 ....*....|....*...
gi 446714178 122 DAMLQYVKNGGSIFFIAD 139
Cdd:COG3225  233 YALDQYLMRGGKLLWLLD 250
DUF2194 pfam09960
Uncharacterized protein conserved in bacteria (DUF2194); This domain, found in various ...
 84-137 5.79e-03

Uncharacterized protein conserved in bacteria (DUF2194); This domain, found in various hypothetical bacterial proteins, has no known function.


Pssm-ID: 401800 [Multi-domain]  Cd Length: 586  Bit Score: 39.37  E-value: 5.79e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446714178   84 GYHVKELRKSTPITYE-----------DLKDYNVFIVPEANIPYKKSEQDAMLQYVKNGGSIFFI 137
Cdd:pfam09960  57 KKMVEPVLEYMKIPYElvdvektfdtpDLERYRTVITTYPDMDSLKSYLKSLMDFVENGGNLFFA 121
 
Name Accession Description Interval E-value
GldG COG3225
ABC-type uncharacterized transport system involved in gliding motility, auxiliary component ...
 44-139 5.64e-05

ABC-type uncharacterized transport system involved in gliding motility, auxiliary component [Cell motility];


Pssm-ID: 442458 [Multi-domain]  Cd Length: 494  Bit Score: 45.70  E-value: 5.64e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446714178  44 VNQNNGKKVLFDNTHGQTAgtadwvIDGGFSDFGNGIAKNGYHVKE--LRKSTPItyedLKDYNVFIVPEANIPYKKSEQ 121
Cdd:COG3225  163 LTRTKKPKVGFLTGHGELS------LDRDLSDFVEALEEKGYDVAPlnLDSAAEI----PEDADVLVIAGPTKAFSEEEK 232

                         90
                 ....*....|....*...
gi 446714178 122 DAMLQYVKNGGSIFFIAD 139
Cdd:COG3225  233 YALDQYLMRGGKLLWLLD 250
DUF2194 pfam09960
Uncharacterized protein conserved in bacteria (DUF2194); This domain, found in various ...
 84-137 5.79e-03

Uncharacterized protein conserved in bacteria (DUF2194); This domain, found in various hypothetical bacterial proteins, has no known function.


Pssm-ID: 401800 [Multi-domain]  Cd Length: 586  Bit Score: 39.37  E-value: 5.79e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446714178   84 GYHVKELRKSTPITYE-----------DLKDYNVFIVPEANIPYKKSEQDAMLQYVKNGGSIFFI 137
Cdd:pfam09960  57 KKMVEPVLEYMKIPYElvdvektfdtpDLERYRTVITTYPDMDSLKSYLKSLMDFVENGGNLFFA 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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