|
Name |
Accession |
Description |
Interval |
E-value |
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
12-243 |
2.48e-119 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 339.83 E-value: 2.48e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 12 LEYLKLKQMAQHLGDVVDFSINNELSFVETLVKLTNYEIDVREQNMIHSMVKMGAFPHRKEVDEFDFEFQPSINKQQILD 91
Cdd:NF038214 1 LRQLKLPGMARALEELAEQAAREELSFEEFLALLLEAELAERENRRIERRLKRARFPAAKTLEDFDFTAAPGLDKAQIRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 92 FISLRFLEQQENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRLKHYTKYKLLIIDEI 171
Cdd:NF038214 81 LATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDEL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446721386 172 GYLPIDPEDAKLFFQLIDMRYEKRSTILTTNINFKSWDEVFQDPKLANAILDRVLHHATVVSIVGQSYRIKD 243
Cdd:NF038214 161 GYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVFGDPTLAAAILDRLVHHAHILELKGESYRLKE 232
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
5-244 |
1.95e-107 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 310.17 E-value: 1.95e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 5 YQQLTTNLEYLKLKQMAQHLGDVVDFSINNELSFVETLVKLTNYEIDVREQNMIHSMVKMGAFPHRKEVDEFDFEFQPSI 84
Cdd:COG1484 3 MEELKELLKALKLPGMAEALDELLAQAACDELSYEEFLALLLEAEVAEREQRRIERRLKAARFPAAKTLEDFDFDAQPGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 85 NKQQILDFISLRFLEQQENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRLKHYTKYK 164
Cdd:COG1484 83 DRRQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEARADGRLERLLKRLAKVD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 165 LLIIDEIGYLPIDPEDAKLFFQLIDMRYEKRSTILTTNINFKSWDEVFQDPKLANAILDRVLHHATVVSIVGQSYRIKDH 244
Cdd:COG1484 163 LLILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVFGDPTLATAILDRLVHHAHIIELKGESYRLKEA 242
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
10-242 |
3.21e-83 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 248.51 E-value: 3.21e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 10 TNLEYLKLKQMAQHLGDVVDFSINNELSFVETLVKLTNYEIDVREQNMIHSMVKMGAFPHRKEVDEFDFEFQPSINKQQI 89
Cdd:pfam01695 1 TQLKQLKLPGMAEAWEELSQQAASTSLSYEEFLEHLLEEELAWRDTRRLERLLRMAKLPPHKTLEDFDFTFAPGLDQRIV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 90 LDFISLRFLEQQENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRLKHYTKYKLLIID 169
Cdd:pfam01695 81 AELASLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446721386 170 EIGYLPIDPEDAKLFFQLIDMRYEKRSTILTTNINFKSWDEVFQDPKLANAILDRVLHHATVVSIVGQSYRIK 242
Cdd:pfam01695 161 EWGYLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVFGDAVLATAILDRLLHHCHIVPIKGESYRLK 233
|
|
| PRK09183 |
PRK09183 |
transposase/IS protein; Provisional |
1-243 |
3.63e-81 |
|
transposase/IS protein; Provisional
Pssm-ID: 181681 Cd Length: 259 Bit Score: 244.23 E-value: 3.63e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 1 MKNSYQQLTTNLEYLKLKQMAQHLGDVVDFSINNELSFVETLVKLTNYEIDVREQNMIHSMVKMGAFPHRKEVDEFDFEF 80
Cdd:PRK09183 2 MELQHQRLMALCGQLQLESLISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 81 QPSINKQQILDFISLRFLEQQENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRLKHY 160
Cdd:PRK09183 82 ATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 161 T-KYKLLIIDEIGYLPIDPEDAKLFFQLIDMRYEKRSTILTTNINFKSWDEVF-QDPKLANAILDRVLHHATVVSIVGQS 238
Cdd:PRK09183 162 VmAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFaGDAALTSAMLDRLLHHSHVVQIKGES 241
|
....*
gi 446721386 239 YRIKD 243
Cdd:PRK09183 242 YRLKQ 246
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
85-224 |
8.14e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 74.88 E-value: 8.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 85 NKQQILDFISLRFLEQQENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIEN----RLESRLKHY 160
Cdd:cd00009 3 QEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGhflvRLLFELAEK 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446721386 161 TKYKLLIIDEIGYLPIDPEDAKLFF--QLIDMR--YEKRSTILTTNINFkswdevfqDPKLANAILDR 224
Cdd:cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVleTLNDLRidRENVRVIGATNRPL--------LGDLDRALYDR 142
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
102-228 |
5.71e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.83 E-value: 5.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 102 ENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRLK---------------HYTKYKLL 166
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAsgsgelrlrlalalaRKLKPDVL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446721386 167 IIDEIGYLPIDPEDAKLFFQ------LIDMRYEKRSTILTTNinfkswDEVFQDPKLANAILDRVLHH 228
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLLeelrllLLLKSEKNLTVILTTN------DEKDLGPALLRRRFDRRIVL 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
12-243 |
2.48e-119 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 339.83 E-value: 2.48e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 12 LEYLKLKQMAQHLGDVVDFSINNELSFVETLVKLTNYEIDVREQNMIHSMVKMGAFPHRKEVDEFDFEFQPSINKQQILD 91
Cdd:NF038214 1 LRQLKLPGMARALEELAEQAAREELSFEEFLALLLEAELAERENRRIERRLKRARFPAAKTLEDFDFTAAPGLDKAQIRE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 92 FISLRFLEQQENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRLKHYTKYKLLIIDEI 171
Cdd:NF038214 81 LATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGRLGRLLRRLARYDLLIIDEL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446721386 172 GYLPIDPEDAKLFFQLIDMRYEKRSTILTTNINFKSWDEVFQDPKLANAILDRVLHHATVVSIVGQSYRIKD 243
Cdd:NF038214 161 GYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVFGDPTLAAAILDRLVHHAHILELKGESYRLKE 232
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
5-244 |
1.95e-107 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 310.17 E-value: 1.95e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 5 YQQLTTNLEYLKLKQMAQHLGDVVDFSINNELSFVETLVKLTNYEIDVREQNMIHSMVKMGAFPHRKEVDEFDFEFQPSI 84
Cdd:COG1484 3 MEELKELLKALKLPGMAEALDELLAQAACDELSYEEFLALLLEAEVAEREQRRIERRLKAARFPAAKTLEDFDFDAQPGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 85 NKQQILDFISLRFLEQQENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRLKHYTKYK 164
Cdd:COG1484 83 DRRQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEARADGRLERLLKRLAKVD 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 165 LLIIDEIGYLPIDPEDAKLFFQLIDMRYEKRSTILTTNINFKSWDEVFQDPKLANAILDRVLHHATVVSIVGQSYRIKDH 244
Cdd:COG1484 163 LLILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVFGDPTLATAILDRLVHHAHIIELKGESYRLKEA 242
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
10-242 |
3.21e-83 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 248.51 E-value: 3.21e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 10 TNLEYLKLKQMAQHLGDVVDFSINNELSFVETLVKLTNYEIDVREQNMIHSMVKMGAFPHRKEVDEFDFEFQPSINKQQI 89
Cdd:pfam01695 1 TQLKQLKLPGMAEAWEELSQQAASTSLSYEEFLEHLLEEELAWRDTRRLERLLRMAKLPPHKTLEDFDFTFAPGLDQRIV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 90 LDFISLRFLEQQENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRLKHYTKYKLLIID 169
Cdd:pfam01695 81 AELASLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGKLTRKLQQLLKPDVLILD 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446721386 170 EIGYLPIDPEDAKLFFQLIDMRYEKRSTILTTNINFKSWDEVFQDPKLANAILDRVLHHATVVSIVGQSYRIK 242
Cdd:pfam01695 161 EWGYLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVFGDAVLATAILDRLLHHCHIVPIKGESYRLK 233
|
|
| PRK09183 |
PRK09183 |
transposase/IS protein; Provisional |
1-243 |
3.63e-81 |
|
transposase/IS protein; Provisional
Pssm-ID: 181681 Cd Length: 259 Bit Score: 244.23 E-value: 3.63e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 1 MKNSYQQLTTNLEYLKLKQMAQHLGDVVDFSINNELSFVETLVKLTNYEIDVREQNMIHSMVKMGAFPHRKEVDEFDFEF 80
Cdd:PRK09183 2 MELQHQRLMALCGQLQLESLISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 81 QPSINKQQILDFISLRFLEQQENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRLKHY 160
Cdd:PRK09183 82 ATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 161 T-KYKLLIIDEIGYLPIDPEDAKLFFQLIDMRYEKRSTILTTNINFKSWDEVF-QDPKLANAILDRVLHHATVVSIVGQS 238
Cdd:PRK09183 162 VmAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFaGDAALTSAMLDRLLHHSHVVQIKGES 241
|
....*
gi 446721386 239 YRIKD 243
Cdd:PRK09183 242 YRLKQ 246
|
|
| PRK06526 |
PRK06526 |
transposase; Provisional |
40-243 |
5.49e-61 |
|
transposase; Provisional
Pssm-ID: 180607 Cd Length: 254 Bit Score: 192.39 E-value: 5.49e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 40 ETLVKLTNYEIDVREQNMIHSMVKMGAFPHRKEVDEFDFEFQPSINKQQILDFISLRFLEQQENIVFLGPSGVGKTHLAT 119
Cdd:PRK06526 37 EFLAACLQREVAARESHGGEGRIRAARFPARKSLEEFDFDHQRSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAI 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 120 SIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRLKHYTKYKLLIIDEIGYLPIDPEDAKLFFQLIDMRYEKRSTIL 199
Cdd:PRK06526 117 GLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIV 196
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 446721386 200 TTNINFKSWDEVFQDPKLANAILDRVLHHATVVSIVGQSYRIKD 243
Cdd:PRK06526 197 TSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYRLKD 240
|
|
| PRK08181 |
PRK08181 |
transposase; Validated |
42-240 |
4.69e-43 |
|
transposase; Validated
Pssm-ID: 136670 [Multi-domain] Cd Length: 269 Bit Score: 147.00 E-value: 4.69e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 42 LVKLTNYEIDVREQNMIHSMVKMGAFPHRKEVDEFDFEFQPSINKQQILDFIS-LRFLEQQENIVFLGPSGVGKTHLATS 120
Cdd:PRK08181 46 LAAIAEHELAERARRRIERHLAEAHLPPGKTLDSFDFEAVPMVSKAQVMAIAAgDSWLAKGANLLLFGPPGGGKSHLAAA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 121 IGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRLKHYTKYKLLIIDEIGYLPIDPEDAKLFFQLIDMRYEKRSTILT 200
Cdd:PRK08181 126 IGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILIT 205
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 446721386 201 TNINFKSWDEVFQDPKLANAILDRVLHHATVVSIVGQSYR 240
Cdd:PRK08181 206 ANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYR 245
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
85-224 |
8.14e-17 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 74.88 E-value: 8.14e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 85 NKQQILDFISLRFLEQQENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIEN----RLESRLKHY 160
Cdd:cd00009 3 QEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGhflvRLLFELAEK 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446721386 161 TKYKLLIIDEIGYLPIDPEDAKLFF--QLIDMR--YEKRSTILTTNINFkswdevfqDPKLANAILDR 224
Cdd:cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVleTLNDLRidRENVRVIGATNRPL--------LGDLDRALYDR 142
|
|
| PRK08116 |
PRK08116 |
hypothetical protein; Validated |
100-242 |
1.22e-09 |
|
hypothetical protein; Validated
Pssm-ID: 236153 [Multi-domain] Cd Length: 268 Bit Score: 56.95 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 100 QQENIVFL--GPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESR---LKHYTKYKLLIIDEIGyL 174
Cdd:PRK08116 111 KKENVGLLlwGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDEneiIRSLVNADLLILDDLG-A 189
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 175 PIDPEDAK-LFFQLIDMRY-EKRSTILTTNInfkSWDEVfQDPKLANaILDRVLHHATVVSIVGQSYRIK 242
Cdd:PRK08116 190 ERDTEWAReKVYNIIDSRYrKGLPTIVTTNL---SLEEL-KNQYGKR-IYDRILEMCTPVENEGKSYRKE 254
|
|
| PRK06835 |
PRK06835 |
DNA replication protein DnaC; Validated |
85-242 |
1.67e-08 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 235871 [Multi-domain] Cd Length: 329 Bit Score: 54.14 E-value: 1.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 85 NKQQILDfISLRFLEQ----QENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRlkhy 160
Cdd:PRK06835 164 NMEKILE-KCKNFIENfdknNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELE---- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 161 TKYK------LLIIDEIGYLPIDPEDAKLFFQLIDMRYEKR-STILTTNINFkswdevfqdPKLANA----ILDRVLHHA 229
Cdd:PRK06835 239 EVYDllincdLLIIDDLGTEKITEFSKSELFNLINKRLLRQkKMIISTNLSL---------EELLKTyserISSRLLGNF 309
|
170
....*....|...
gi 446721386 230 TVVSIVGQSYRIK 242
Cdd:PRK06835 310 TLLKFYGEDIRIK 322
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
102-228 |
5.71e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.83 E-value: 5.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 102 ENIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKRAKIENRLESRLK---------------HYTKYKLL 166
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAsgsgelrlrlalalaRKLKPDVL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446721386 167 IIDEIGYLPIDPEDAKLFFQ------LIDMRYEKRSTILTTNinfkswDEVFQDPKLANAILDRVLHH 228
Cdd:smart00382 83 ILDEITSLLDAEQEALLLLLeelrllLLLKSEKNLTVILTTN------DEKDLGPALLRRRFDRRIVL 144
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
100-201 |
9.47e-07 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 48.65 E-value: 9.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 100 QQENIVFL-GPSGVGKTHLATSIGIAAAKKRTST--YFIKCHDLLQNLKRAKIENRLESRLKHYTKYKLLIIDEIGYLPI 176
Cdd:COG0593 32 KAYNPLFLyGGVGLGKTHLLHAIGNEALENNPGArvVYLTAEEFTNDFINAIRNNTIEEFKEKYRSVDVLLIDDIQFLAG 111
|
90 100
....*....|....*....|....*
gi 446721386 177 DPEDAKLFFQLIDMRYEKRSTILTT 201
Cdd:COG0593 112 KEATQEEFFHTFNALREAGKQIVLT 136
|
|
| PRK12377 |
PRK12377 |
putative replication protein; Provisional |
103-225 |
3.32e-06 |
|
putative replication protein; Provisional
Pssm-ID: 183482 [Multi-domain] Cd Length: 248 Bit Score: 46.75 E-value: 3.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 103 NIVFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLkRAKIENRL--ESRLKHYTKYKLLIIDEIGYLPIDPED 180
Cdd:PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL-HESYDNGQsgEKFLQELCKVDLLVLDEIGIQRETKNE 181
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 446721386 181 AKLFFQLIDMRYEK-RSTILTTNINFKSWDEVfqdpkLANAILDRV 225
Cdd:PRK12377 182 QVVLNQIIDRRTASmRSVGMLTNLNHEAMSTL-----LGERVMDRM 222
|
|
| PRK07952 |
PRK07952 |
DNA replication protein DnaC; Validated |
105-240 |
8.31e-06 |
|
DNA replication protein DnaC; Validated
Pssm-ID: 181180 [Multi-domain] Cd Length: 244 Bit Score: 45.53 E-value: 8.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 105 VFLGPSGVGKTHLATSIGIAAAKKRTSTYFIKCHDLLQNLKR--AKIENRLESRLKHYTKYKLLIIDEIGyLPIDPEDAK 182
Cdd:PRK07952 103 IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDtfSNSETSEEQLLNDLSNVDLLVIDEIG-VQTESRYEK 181
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446721386 183 LFF-QLIDMRY-EKRSTILTTNINFKSWDEVfqdpkLANAILDRV-LHHATVVSIVGQSYR 240
Cdd:PRK07952 182 VIInQIVDRRSsSKRPTGMLTNSNMEEMTKL-----LGERVMDRMrLGNSLWVIFNWDSYR 237
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
98-177 |
1.14e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 40.79 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 98 LEQQENIVFL-GPSGVGKTHLATSIGIAAAKKRTSTYFIKC----------HDLLQNLKRAKIEN--------RLESRLK 158
Cdd:pfam13401 1 IRFGAGILVLtGESGTGKTTLLRRLLEQLPEVRDSVVFVDLpsgtspkdllRALLRALGLPLSGRlskeellaALQQLLL 80
|
90
....*....|....*....
gi 446721386 159 HYTKYKLLIIDEIGYLPID 177
Cdd:pfam13401 81 ALAVAVVLIIDEAQHLSLE 99
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
80-177 |
1.25e-04 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 42.25 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 80 FQPSINKQQILDFisLRFLEQQENI-VFLGPSGVGKTHLAtsigIAAAKKRTSTYFIKCH------DLLQNL-------- 144
Cdd:COG2842 30 FVETKNVRRFAEA--LDEARALPGIgVVYGESGVGKTTAA----REYANRNPNVIYVTASpswtskELLEELaeelgipa 103
|
90 100 110
....*....|....*....|....*....|....*.
gi 446721386 145 ---KRAKIENRLESRLKhYTKYkLLIIDEIGYLPID 177
Cdd:COG2842 104 ppgTIADLRDRILERLA-GTGR-LLIIDEADHLKPK 137
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
95-175 |
7.20e-04 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 40.31 E-value: 7.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 95 LRFLEQQENIVFLGPSGVGKTHLATSIgiaaAKKRTSTYFIKC-HDLLQNLKRAKIENRLESRLKHYTKYKLLIIDEIGY 173
Cdd:COG1373 14 LKLLDNRKAVVITGPRQVGKTTLLKQL----AKELENILYINLdDPRLRALAEEDPDDLLEALKELYPGKTYLFLDEIQR 89
|
..
gi 446721386 174 LP 175
Cdd:COG1373 90 VP 91
|
|
| FlhF |
COG1419 |
Flagellar biosynthesis GTPase FlhF [Cell motility]; |
88-235 |
8.17e-04 |
|
Flagellar biosynthesis GTPase FlhF [Cell motility];
Pssm-ID: 441029 [Multi-domain] Cd Length: 361 Bit Score: 39.85 E-value: 8.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 88 QILDFISLRFLEQQENIVFLGPSGVGKThlaTSIG-IAA-----AKKR-----TSTYFIKCHDLLQN--------LKRAK 148
Cdd:COG1419 151 RRLPVAEDPLLDEGGVIALVGPTGVGKT---TTIAkLAArfvlrGKKKvalitTDTYRIGAVEQLKTyarilgvpVEVAY 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 149 IENRLESRLKHYTKYKLLIIDEIGYLPIDPEDAKLFFQLIDMRYEKRsTILTTNINFKSWD-----EVFQDPKLANAI-- 221
Cdd:COG1419 228 DPEELKEALERLRDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIE-VYLVLSATTKYEDlkeivEAFSSLGLDGLIlt 306
|
170
....*....|....*
gi 446721386 222 -LDRVLHHATVVSIV 235
Cdd:COG1419 307 kLDETASLGSILNLL 321
|
|
| DEXSc_Pif1_like |
cd18037 |
DEAD-box helicase domain of Pif1; Pif1 and other members of this family are RecD-like ... |
95-184 |
9.76e-04 |
|
DEAD-box helicase domain of Pif1; Pif1 and other members of this family are RecD-like helicases involved in maintaining genome stability through unwinding double-stranded DNAs (dsDNAs), DNA/RNA hybrids, and G quadruplex (G4) structures. The members of Pif1 helicase subfamily studied so far all appear to contribute to telomere maintenance. Pif1 is a member of the DEAD-like helicases superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350795 [Multi-domain] Cd Length: 183 Bit Score: 39.15 E-value: 9.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 95 LRFLEQQENIVFLGPSGVGKTHL----------------AT-SIGIAAAKKRTSTY--F----IKCHDLLQNLKRAKIEN 151
Cdd:cd18037 6 LDLVLDGKNVFFTGSAGTGKSYLlrriiralpsrpkrvaVTaSTGIAACNIGGTTLhsFagigLGSEPAEDLLERVKRSP 85
|
90 100 110
....*....|....*....|....*....|...
gi 446721386 152 RlesRLKHYTKYKLLIIDEIGYLpidpeDAKLF 184
Cdd:cd18037 86 Y---LVQRWRKCDVLIIDEISML-----DADLF 110
|
|
| RecA-like_Lon |
cd19500 |
lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an ... |
86-171 |
1.24e-03 |
|
lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an evolutionarily conserved ATP-dependent serine protease, present in bacteria and eukaryotic mitochondria and peroxisomes, which mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Lon protease is both an ATP-dependent peptidase and a protein-activated ATPase. This RecA-like Lon domain subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410908 [Multi-domain] Cd Length: 182 Bit Score: 38.69 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 86 KQQILDFISLRFLEQQEN---IVFLGPSGVGKTHLATSigIAAAKKRTSTYF----------IKCH----------DLLQ 142
Cdd:cd19500 19 KERILEYLAVRKLKGSMKgpiLCLVGPPGVGKTSLGKS--IARALGRKFVRIslggvrdeaeIRGHrrtyvgampgRIIQ 96
|
90 100
....*....|....*....|....*....
gi 446721386 143 NLKRAKIENrlesrlkhytkyKLLIIDEI 171
Cdd:cd19500 97 ALKKAGTNN------------PVFLLDEI 113
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
103-171 |
1.47e-03 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 39.65 E-value: 1.47e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446721386 103 NIVFLGPSGVGKTHLATSIgiaaaKKRTSTYFIKCHDLLQNLK--RAKIEnRLESRLKHYTKYKLLIIDEI 171
Cdd:PRK13341 54 SLILYGPPGVGKTTLARII-----ANHTRAHFSSLNAVLAGVKdlRAEVD-RAKERLERHGKRTILFIDEV 118
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
67-202 |
1.49e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 39.45 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 67 FPHR-KEVDEFDFEFQPSINKQQIldfislrfleqqENIVFLGPSGVGKTHLATSIGiAAAKKRTSTYFIKC-------- 137
Cdd:COG1474 28 LPHReEEIEELASALRPALRGERP------------SNVLIYGPTGTGKTAVAKYVL-EELEEEAEERGVDVrvvyvncr 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 138 ---------HDLLQNLK-----------RAKIENRLESRLKHYTKYKLLIIDEIGYLpIDPEDAKLFFQLIDMRYE---- 193
Cdd:COG1474 95 qastryrvlSRILEELGsgedipstglsTDELFDRLYEALDERDGVLVVVLDEIDYL-VDDEGDDLLYQLLRANEElega 173
|
....*....
gi 446721386 194 KRSTILTTN 202
Cdd:COG1474 174 RVGVIGISN 182
|
|
| KaiC-like_C |
cd19487 |
C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock ... |
98-204 |
2.97e-03 |
|
C-terminal domain of KaiC family protein; uncharacterized subfamily; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.
Pssm-ID: 410895 [Multi-domain] Cd Length: 219 Bit Score: 37.66 E-value: 2.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 98 LEQQENIVFLGPSGVGKTHLATSIGIAAAKK-----------RTSTYFIKCHDLLQNLKRAKIENRLESRL---KHYT-- 161
Cdd:cd19487 16 LERGTSTLLIGPAGVGKSTLALQFAKAAAARgersvlfsfdeSIGTLFERSEALGIDLRAMVEKGLLSIEQidpAELSpg 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 446721386 162 -------------KYKLLIIDEI-GYLPIDPEDAKLFFQLIDM-RYEKRSTILTTNIN 204
Cdd:cd19487 96 efaqrvrtsveqeDARVVVIDSLnGYLNAMPDERFLILQMHELlSYLNNQGVTTLLIV 153
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
103-202 |
3.28e-03 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 37.26 E-value: 3.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 103 NIVFLGPSGVGKTHLATSIgiaAAKKRTSTYFIKCHDLLqnlkrAKIENRLESRLKHYTKY------KLLIIDEI----- 171
Cdd:cd19481 28 GILLYGPPGTGKTLLAKAL---AGELGLPLIVVKLSSLL-----SKYVGESEKNLRKIFERarrlapCILFIDEIdaigr 99
|
90 100 110
....*....|....*....|....*....|....*...
gi 446721386 172 --GYLPIDPEDAKLFFQLIDM--RYEKRS---TILTTN 202
Cdd:cd19481 100 krDSSGESGELRRVLNQLLTEldGVNSRSkvlVIAATN 137
|
|
| RNA_helicase |
pfam00910 |
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding ... |
104-189 |
3.95e-03 |
|
RNA helicase; This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Pssm-ID: 459992 Cd Length: 102 Bit Score: 36.04 E-value: 3.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 104 IVFLGPSGVGKTHLATSIGIAAAKK----RTSTYFIKChdllqnlkrakienrlesRLKH---YTKYKLLIIDEIGYLPi 176
Cdd:pfam00910 1 IWLYGPPGCGKSTLAKYLARALLKKlglpKDSVYSRNP------------------DDDFwdgYTGQPVVIIDDFGQNP- 61
|
90
....*....|...
gi 446721386 177 DPEDAKLFFQLID 189
Cdd:pfam00910 62 DGPDEAELIRLVS 74
|
|
| Rad51C |
cd19492 |
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ... |
106-173 |
5.91e-03 |
|
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.
Pssm-ID: 410900 [Multi-domain] Cd Length: 172 Bit Score: 36.43 E-value: 5.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446721386 106 FLGPSGVGKT----HLATSIGIAAA-------------KKRTSTYFIKCHDLLQNLkrAKIeNRLESRLKHYTKYKLLII 168
Cdd:cd19492 6 ICGVPGVGKTqlcmQLAVNVQIPKCfgglageaiyidtEGSFNIHYFRVHDYVELL--ALI-NSLPKFLEDHPKVKLIVV 82
|
....*
gi 446721386 169 DEIGY 173
Cdd:cd19492 83 DSIAF 87
|
|
| Bac_DnaA |
pfam00308 |
Bacterial dnaA protein; |
103-174 |
7.74e-03 |
|
Bacterial dnaA protein;
Pssm-ID: 278724 [Multi-domain] Cd Length: 219 Bit Score: 36.54 E-value: 7.74e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446721386 103 NIVFL-GPSGVGKTHLATSIGIAAAKKRTST--YFIKCHDLLQNLKRAKIENRLESRLKHYTKYKLLIIDEIGYL 174
Cdd:pfam00308 35 NPLFIyGGVGLGKTHLLHAIGNYALQNAPNLrvVYLTAEEFLNDFVDAIRDNKTNQFKEKYRNVDVLLIDDIQFL 109
|
|
| |
