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Conserved domains on  [gi|446722093|ref|WP_000799406|]
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MULTISPECIES: spermidine/putrescine ABC transporter permease PotB [Enterobacteriaceae]

Protein Classification

spermidine/putrescine ABC transporter permease PotB( domain architecture ID 10793277)

spermidine/putrescine ABC transporter permease PotB is a transmembrane (TM) subunit of the periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter PotABCD that is responsible for the translocation across the membrane of putrescine and spermidine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 1-282 1.80e-169

spermidine/putrescine ABC transporter membrane protein; Reviewed


:

Pssm-ID: 181910  Cd Length: 285  Bit Score: 470.32  E-value: 1.80e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   1 MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLLDPLYFEVLLHSLNMALIATLACL 80
Cdd:PRK09497   1 MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  81 VLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI 160
Cdd:PRK09497  81 VLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 161 LLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVI 240
Cdd:PRK09497 161 LLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVI 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 446722093 241 KVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASRLLNKKV 282
Cdd:PRK09497 241 KSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKV 282
 
Name Accession Description Interval E-value
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 1-282 1.80e-169

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 470.32  E-value: 1.80e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   1 MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLLDPLYFEVLLHSLNMALIATLACL 80
Cdd:PRK09497   1 MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  81 VLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI 160
Cdd:PRK09497  81 VLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 161 LLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVI 240
Cdd:PRK09497 161 LLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVI 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 446722093 241 KVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASRLLNKKV 282
Cdd:PRK09497 241 KSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKV 282
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 16-281 4.73e-105

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 307.07  E-value: 4.73e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  16 VGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLL-DPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLP 94
Cdd:COG1176   19 LLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFtDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAP 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  95 HKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIE 174
Cdd:COG1176   99 PRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALE 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 175 KLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGA 254
Cdd:COG1176  179 KIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNWPLAA 258

                        250       260
                 ....*....|....*....|....*..
gi 446722093 255 ATSITLTIVMGLMLLVYWRASRLLNKK 281
Cdd:COG1176  259 ALAVVLLLIVLLVLLLYLRLLRRRRLL 285
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 56-270 3.93e-18

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 80.90  E-value: 3.93e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   56 LLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLL 135
Cdd:TIGR01581  14 LTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYLE 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  136 WLGvidtpIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVM 215
Cdd:TIGR01581  94 AAG-----IQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAW 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 446722093  216 LPAMGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAAT--SITLTIVMGLMLLV 270
Cdd:TIGR01581 169 ARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVasALLLLVIAFLLLLV 225
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 65-264 2.97e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.92  E-value: 2.97e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  65 LLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLkiflstkgylnefLLWLGVIDTPI 144
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLL-------------VLLFGVLLGWG 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 145 RIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYV 224
Cdd:cd06261   68 ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 446722093 225 SDLMGG--AKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVM 264
Cdd:cd06261  148 VSFLGGgeAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 148-283 1.02e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 48.06  E-value: 1.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  148 FTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDL 227
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEF 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446722093  228 MGGAKNLligNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASRLLNKKVS 283
Cdd:pfam00528 130 LGSWPGL---GLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 68-199 2.51e-03

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 37.91  E-value: 2.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  68 SLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLivpfwtNSLIR----IYGLKIFLstkgylnefLLW----LGV 139
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLL------NTLMGlppvVVGLIVYL---------LLSrsgpLGF 65

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 140 IDtpirIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRII 199
Cdd:NF038017  66 LG----LLYTPTAMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLL 121
 
Name Accession Description Interval E-value
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 1-282 1.80e-169

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 470.32  E-value: 1.80e-169
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   1 MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLLDPLYFEVLLHSLNMALIATLACL 80
Cdd:PRK09497   1 MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYTRLLDPLYAEVLLHSLNMALIATLACL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  81 VLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI 160
Cdd:PRK09497  81 VLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTESAVIIGLVYI 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 161 LLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVI 240
Cdd:PRK09497 161 LLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVI 240

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 446722093 241 KVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASRLLNKKV 282
Cdd:PRK09497 241 KSQFLNIRDWPFGAATSITLTIVMGLMLLVYYRASKLLNKKV 282
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 16-281 4.73e-105

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 307.07  E-value: 4.73e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  16 VGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLL-DPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLP 94
Cdd:COG1176   19 LLWLLLFFVLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFtDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAP 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  95 HKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIE 174
Cdd:COG1176   99 PRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLLALGLIDEPLRLLYTEFAVVIGLVYVYLPFMVLPLYAALE 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 175 KLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGA 254
Cdd:COG1176  179 KIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALNWPLAA 258

                        250       260
                 ....*....|....*....|....*..
gi 446722093 255 ATSITLTIVMGLMLLVYWRASRLLNKK 281
Cdd:COG1176  259 ALAVVLLLIVLLVLLLYLRLLRRRRLL 285
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 18-270 4.09e-65

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 206.48  E-value: 4.09e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  18 WLVLFVFLPNLMIIGTSF------------LTRDDASFVKMVFTLDNYTRLL-DPLYFEVLLHSLNMALIATLACLVLGY 84
Cdd:PRK10683  39 WLILLFLLPFLIVFKISLaemaraippytdLMEWADGQLSITLNLGNFLQLTdDPLYFDAYLQSLQVAAISTLCCLLIGY 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  85 PFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPF 164
Cdd:PRK10683 119 PLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYLPF 198

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 165 MVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKVQF 244
Cdd:PRK10683 199 MVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQEF 278

                        250       260
                 ....*....|....*....|....*.
gi 446722093 245 LNIRDWPFGAAtsitLTIVMGLMLLV 270
Cdd:PRK10683 279 FNNRDWPVASA----VAIIMLLLLIV 300
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
2-276 3.43e-30

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 118.72  E-value: 3.43e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   2 KNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRddasfvkmvftLDNYTRLL-DPLYFEVLLHSLNMALIATLACL 80
Cdd:COG1178    3 TRPRRRPRLLLLLLALLLALLVLLPLLALLLRAFTDG-----------LANFWALLsDPYLWRALGNTLLLALLVTLLSL 71

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  81 VLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIriMFTPSAVIIGLVYI 160
Cdd:COG1178   72 LLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLEPPD--IYGLGGIILVLVLF 149

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 161 LLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGnVI 240
Cdd:COG1178  150 NYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVLGGGYTTLTT-AI 228

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 446722093 241 KVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASR 276
Cdd:COG1178  229 YQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRR 264
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 4-281 5.94e-28

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 108.28  E-value: 5.94e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   4 TSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYTRLL-DPLYFEVLLHSLNMALIATLACLVL 82
Cdd:COG1177    1 SSRLGRLLLRLFLALVLLFLYLPILVLVLYSFNDSWFLTFPPEGFTLRWYAELFsDPRLLDALLNSLLIALLSTLLATVL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  83 GYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTkgylnefllwlgvidtpIRIMFTPSAVIIGLVYILL 162
Cdd:COG1177   81 GTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSA-----------------LGLSGGLWGLILAHVVFTL 143

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 163 PFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKN----LLIGN 238
Cdd:COG1177  144 PFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITLFLAGPGVttlpVYIYS 223

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|...
gi 446722093 239 VIKVQFlnirdWPFGAATSITLTIVMGLMLLVYWRASRLLNKK 281
Cdd:COG1177  224 MIRRGI-----SPEINALSTLLILLSLLLLLLAERLRRRGERR 261
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 57-222 6.62e-28

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 107.06  E-value: 6.62e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  57 LDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFwtnslirI-------YGLKIFLSTKGY 129
Cdd:COG4149    1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPL-------VlpptvlgFYLLLLFGRNGP 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 130 LNEFLLWLGVIdtpiRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIA 209
Cdd:COG4149   74 LGQLLEELFGI----SLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILA 149

                        170
                 ....*....|...
gi 446722093 210 GCLLVMLPAMGLF 222
Cdd:COG4149  150 GAVLAFARALGEF 162
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 14-222 9.10e-25

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 99.82  E-value: 9.10e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  14 TIVGWLVLFVFLPNLMIIGTSFLTrddasfvkmvfTLDNYTRLL-DPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAK 92
Cdd:COG0555   15 LTLLYLSLIVLLPLAALVLKAAGL-----------GWAEFWAVLtSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVR 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  93 LPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGvidtpIRIMFTPSAVIIGLVYILLPFMVMPLYSS 172
Cdd:COG0555   84 YRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLLAPLG-----IKVAFTPLGIVLAQTFVSLPFVVRTVQPV 158

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 446722093 173 IEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLF 222
Cdd:COG0555  159 LEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARALGEF 208
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
5-276 2.98e-23

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 99.08  E-value: 2.98e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   5 SKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFltrddASFVKMVFTLDNYTR-LLDPLYFEVLLHSLNMALIATLACLVLG 83
Cdd:COG1178  284 GRWRWLALALCLLLVLLGLLLPLLALLLWSL-----TKALDDNLTLDNYRFvLLDPSLLRALLNSLLLALLAALLAVLLA 358

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  84 YPFAWFLAKLPHKVRPLLLFLLIVPfwtnsliriYGLK-IFLSTkGYlneFLLWLGVIdtPIRIMFTPSAVIIGLVYILL 162
Cdd:COG1178  359 LLLAYLVRRRRGRLARLLDRLAMLP---------YAVPgIVLGL-GL---LLLFNRPL--PLLLYGTLAILVLAYVVRFL 423

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 163 PFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIkV 242
Cdd:COG1178  424 PFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSATLLLRPPGFETLAVLI-Y 502

                        250       260       270
                 ....*....|....*....|....*....|....
gi 446722093 243 QFLNIRDWPFGAATSITLTIVMGLMLLVYWRASR 276
Cdd:COG1178  503 QLASSGRYGEAAALALLLVLVSLLPVLLLERLLG 536
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
19-276 3.50e-18

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 82.49  E-value: 3.50e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  19 LVLFVFLPNLMIIGTSF----LTRDDASFVkmvfTLDNYTRLL-DPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKl 93
Cdd:COG1175   31 LLVFVLYPLLYTLYLSFtdwnLLGPPPEFV----GLDNYARLFtDPRFWNALGNTLLFTVVSVPLQLVLGLLLALLLNR- 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  94 PHKVRPLLLFLLIVPFWTNSLIRIYGLK-IFLSTKGYLNEFLLWLGVidTPIRIMFTPS----AVIIGLVYILLPFMVMP 168
Cdd:COG1175  106 KLRGRGFFRTLFFLPWVISPVVVALIWKwLFNPDYGLLNALLGALGL--EPINWLGDPSlalpAVIIVTVWKGTGFNMLI 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 169 LYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLM--GGAKN--LLIGNVIKVQF 244
Cdd:COG1175  184 FLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLtgGGPGNstTTLVLYIYQTA 263

                        250       260       270
                 ....*....|....*....|....*....|..
gi 446722093 245 LNIRDWPFGAATSITLTIVMGLMLLVYWRASR 276
Cdd:COG1175  264 FQQFDFGYASAIAVVLFLIILVLTLLQLRLLR 295
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 56-270 3.93e-18

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 80.90  E-value: 3.93e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   56 LLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLL 135
Cdd:TIGR01581  14 LTDPENIKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYLE 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  136 WLGvidtpIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVM 215
Cdd:TIGR01581  94 AAG-----IQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAW 168

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 446722093  216 LPAMGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAAT--SITLTIVMGLMLLV 270
Cdd:TIGR01581 169 ARALGEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEAAVasALLLLVIAFLLLLV 225
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 49-280 4.28e-15

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 73.88  E-value: 4.28e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  49 TLDNYTRLL-DPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHK-----VRPLLLFLLIVPFW-TNSLIRIYGlk 121
Cdd:PRK15050  58 GLATYRAVLgSPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPgaslvGRFIDTFVAFPSFLiTLAFTFLYG-- 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 122 iflsTKGYLNEFLLWL-GVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIII 200
Cdd:PRK15050 136 ----SAGSVNIALQRLfGLEAPPLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVIL 211

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 201 PLTMPGIIAGCLLVMLPAMGLFYVSdLMGGAKNL-----LIGNVIKVQFlnirDWPfGAATSITLTIVMGLML-LVYWRA 274
Cdd:PRK15050 212 PEAWPALAAGGSLCLLLTLNEFGIV-LFTGAKDVvtlpvLIYSKAIVDF----DYP-TACAIAVVNLALSLGLyALYRRV 285


                 ....*.
gi 446722093 275 SRLLNK 280
Cdd:PRK15050 286 NRRAGG 291
modB PRK09421
molybdate ABC transporter permease subunit;
57-222 6.51e-15

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 72.26  E-value: 6.51e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  57 LDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLL- 135
Cdd:PRK09421   3 LSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLYe 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 136 WLGvidtpIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVM 215
Cdd:PRK09421  83 WFG-----ISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAF 157


                 ....*..
gi 446722093 216 LPAMGLF 222
Cdd:PRK09421 158 ARSLGEF 164
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 16-220 1.08e-14

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 72.36  E-value: 1.08e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   16 VGWLVLFVFLPNL-MIIGTSFLTRDDAsfvkmvftldnYTRLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLP 94
Cdd:TIGR02139  13 LTYLSLIVLLPLAaLFLKASQLGWAGF-----------WQIITEPRVLAAYKLSFGTALIAALINAVFGTLLAWVLVRYR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   95 HKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGvidtpIRIMFTPSAVIIGLVYILLPFMVMPLYSSIE 174
Cdd:TIGR02139  82 FPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAPLG-----IKIAFTPLGIVIALVFVSLPFVVRTVQPVLE 156

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 446722093  175 KLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMG 220
Cdd:TIGR02139 157 EIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVG 202
cysT CHL00187
sulfate transport protein; Provisional
 68-222 1.68e-14

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 71.20  E-value: 1.68e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  68 SLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGvidtpIRIM 147
Cdd:CHL00187  60 TLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLLSHLG-----IQIV 134

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446722093 148 FTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLF 222
Cdd:CHL00187 135 FTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 11-276 4.20e-14

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 72.02  E-value: 4.20e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   11 VIVTIVGWLVLFVFLPNLMIIGTSFLTRDDAsFVkmvfTLDNYTRLL-DPLYFEVLLHSLNMALIATLACLVLGYPFAWF 89
Cdd:TIGR03262   6 LLAGMILALLLFLLLPLLALLTKSVYDSDGD-FI----GLANFAEYFaTPGLLQSLGNSLTVSAIVTAIVVPLAFAFAYA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   90 LAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVidtpirimFTPSAVIIGLVYILLPFMVMPL 169
Cdd:TIGR03262  81 LTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGLLGGFSI--------YGFWGIVIGEVFYTFPHALMIL 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  170 YSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKvQFLNIRD 249
Cdd:TIGR03262 153 VTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNVLATDIYK-QVIGQQN 231

                         250       260
                  ....*....|....*....|....*..
gi 446722093  250 WPFGAATSITLTIVMGLMLLVYWRASR 276
Cdd:TIGR03262 232 FPMGAVVGVLLLLPALLAFGIDRAIQR 258
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 1-216 2.06e-13

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 68.58  E-value: 2.06e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   1 MKNTSKFQNVVIVTIVGWLVLFVF-----LPNLMIIGTSFLTRDDA-----SFVKMVFTLDNYTRLL-DPLYFEVLLHSL 69
Cdd:COG0395    1 MSATARRRRRRLGRILLYLLLILLallflFPLYWMVVTSFKPPAEIfsgppSLLPSEFTLENYRAAFtDGPFGRYLLNSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  70 NMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLStkgylnefllWLGVIDTPIrimft 149
Cdd:COG0395   81 IVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFR----------QLGLLNTYW----- 145

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446722093 150 psAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVML 216
Cdd:COG0395  146 --GLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFI 210
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 65-264 2.97e-13

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 66.92  E-value: 2.97e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  65 LLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLkiflstkgylnefLLWLGVIDTPI 144
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLL-------------VLLFGVLLGWG 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 145 RIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYV 224
Cdd:cd06261   68 ILPGLGLPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFAL 147

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 446722093 225 SDLMGG--AKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVM 264
Cdd:cd06261  148 VSFLGGgeAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 58-222 4.00e-13

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 67.76  E-value: 4.00e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   58 DPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWL 137
Cdd:TIGR00969  55 DPIAVSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWLASF 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  138 GvidtpIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLP 217
Cdd:TIGR00969 135 G-----IQIIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFAR 209


                  ....*
gi 446722093  218 AMGLF 222
Cdd:TIGR00969 210 ALGEF 214
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 18-271 1.96e-10

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 60.20  E-value: 1.96e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  18 WLVLFVFLPNLMIIGTSFLTRDDAsfvkmvFTLDNYTRLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKL-PHK 96
Cdd:COG4132   24 FVLLFLLLPTVWVVIGAFQDDDGG------FTLANYAELTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRRGgPGW 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  97 VRPLLL---------------FLLIVPFWTNSLIriyglKIFLSTKGY--LNEFLLwlgvidtpirimFTPSAVIIGLVY 159
Cdd:COG4132   98 LRRAVLafsgvasnfagvplaFAFIATLGRNGLV-----TLLLKQLGIdlYDGFNL------------YSFWGLILVYLY 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 160 ILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLF-YVSDLMGGAKNL---L 235
Cdd:COG4132  161 FQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLLLFANAFGAYaTAYALTGGNYNLvpiR 240

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 446722093 236 IGNVIKVQFLNirDWPFGAATSITLTIVMGLMLLVY 271
Cdd:COG4132  241 IGALISGDVLL--DPNLGAALALGMIVIMALVMALY 274
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
72-271 5.71e-10

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 58.61  E-value: 5.71e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  72 ALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEfllWLGVIDtpIRIMFTPS 151
Cdd:PRK10971  67 AFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGE---WLAKFD--IKVTYTWL 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 152 AVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFyvsdlmgGA 231
Cdd:PRK10971 142 GIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEF-------GA 214

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 446722093 232 KNLLIGNVI-------KVQFLNIRDWPFGAATSITLTIVMGLMLLVY 271
Cdd:PRK10971 215 VIFIAGNIAwktevtsLMIFVRLQEFDYPAASAIASVILAASLLLLF 261
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 162-213 3.12e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 56.15  E-value: 3.12e-09
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446722093 162 LPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLL 213
Cdd:PRK09500 139 LPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLL 190
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 1-208 2.35e-08

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 54.00  E-value: 2.35e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093   1 MKNTSKFQNVVIVTIVGW-LVLFVFLPNLMIIGTSFLTRDDASFVKMV---FTLDNYTRLLDPL-YFEVLLHSLNMALIA 75
Cdd:COG3833    6 SRKRRRRLKLGLRHLVLIiLAIIALFPILWVVSASFNPGGSLYSSSLIpenFTLENYKKLFTETpFLRWFLNSLIVAVVT 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  76 TLACLVLGYPFAWFLAKLPHKVR-PLLLFLLIV---PFwTNSLIRIYGLkiflstkgylnefLLWLGVIDTPIrimftps 151
Cdd:COG3833   86 AIISVFLAALAAYAFSRFRFKGRkAGLLALLLLqmfPA-FLALVALYLL-------------LSALGLLNTLL------- 144

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 446722093 152 AVIigLVYI--LLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGII 208
Cdd:COG3833  145 GLI--LVYLggAIPFNTWLMKGYFDTIPKELDEAAKIDGASHFQIFFRIILPLAKPILA 201
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 148-283 1.02e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 48.06  E-value: 1.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  148 FTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDL 227
Cdd:pfam00528  50 HGILPAIILALLGWAGYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEF 129

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 446722093  228 MGGAKNLligNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASRLLNKKVS 283
Cdd:pfam00528 130 LGSWPGL---GLLLIEAILGYDYPEIQGPVLAAALILLLLNLLVDILQRLLDPRVR 182
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
56-276 2.69e-05

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 44.74  E-value: 2.69e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  56 LLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEfll 135
Cdd:PRK11602  57 LADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGG--- 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 136 WLGVIDtpIRIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVM 215
Cdd:PRK11602 134 WLDEHN--LQLMFSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTN 211

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446722093 216 LPAMGLF-YVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLL-----VYWRASR 276
Cdd:PRK11602 212 ARAIGEFgAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLflksmLQWRLEN 278
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 133-210 3.60e-05

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 43.98  E-value: 3.60e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446722093 133 FLLWLGVIDTPIrimftpsavIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAG 210
Cdd:COG0600  117 LILWFGIGEASK---------IFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTG 185
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 131-266 7.45e-05

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 43.41  E-value: 7.45e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  131 NEFLLWLGVIDTPIRIMFTPS-AVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIA 209
Cdd:TIGR02138 131 PHFQPFLGSNLGLIPLFGGPIlTAGIVLAIMILPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVG 210

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 446722093  210 GCLLVMLPAMGlfyvsDLMggAKNLLIGNVIKVQFLNIrdwpFGAATSITLTIVMGL 266
Cdd:TIGR02138 211 AVVLGLGRALG-----ETM--AVTMVIGNVFPISPLSL----FDPGTTITSLIANQF 256
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 160-264 7.59e-05

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 43.54  E-value: 7.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 160 ILLPFMVMPLYSSI-----EKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGlfyvsDLMggAKNL 234
Cdd:COG0573  161 IVLAIMILPTITSLsrdalRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALG-----ETM--AVLM 233

                         90       100       110
                 ....*....|....*....|....*....|
gi 446722093 235 LIGNVIkvqflNIRDWPFGAATSITLTIVM 264
Cdd:COG0573  234 VAGNAP-----QIPFSLFDPGRTLTALIAL 258
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 69-210 4.25e-04

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 40.42  E-value: 4.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  69 LNMALIATLACLVLGYPFAWFLAKlPHKVRPLLL----FLLIVPfwtnSLiriyGLKIFLstkgylnefLLWLGVIDTPi 144
Cdd:COG1174   24 LLLVLLALLIALLIAVPLGILITR-RRRLAGLVLgvanILQTIP----SL----ALLALL---------IPLLGIGPAP- 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446722093 145 rimftpsaVIIGLV-YILLPfMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAG 210
Cdd:COG1174   85 --------AIIALVlYALLP-ILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAG 142
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 152-220 6.43e-04

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 40.30  E-value: 6.43e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446722093  152 AVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMG 220
Cdd:TIGR00974 130 AGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAG 198
PRK10952 PRK10952
proline/glycine betaine ABC transporter permease ProW;
68-210 1.24e-03

proline/glycine betaine ABC transporter permease ProW;


Pssm-ID: 236805  Cd Length: 355  Bit Score: 39.69  E-value: 1.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  68 SLNMALIATLACLVLGYPFAWFLAKLPHK---VRPLLLFLLIVPFWTnsliriyglkiflstkgYLNEFLLWLGVIDTPi 144
Cdd:PRK10952 149 TLALVLTALLFCIVIGLPLGIWLARSPRAakiIRPLLDAMQTTPAFV-----------------YLVPIVMLFGIGNVP- 210

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446722093 145 rimftpsAVIIGLVYILLPFMVMPLYSsIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAG 210
Cdd:PRK10952 211 -------GVVVTIIFALPPIVRLTILG-INQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAG 268
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 68-199 2.51e-03

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 37.91  E-value: 2.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  68 SLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLivpfwtNSLIR----IYGLKIFLstkgylnefLLW----LGV 139
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLL------NTLMGlppvVVGLIVYL---------LLSrsgpLGF 65

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 140 IDtpirIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRII 199
Cdd:NF038017  66 LG----LLYTPTAMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTLL 121
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 171-213 2.99e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 38.29  E-value: 2.99e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 446722093 171 SSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLL 213
Cdd:PRK10592 161 SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLL 203
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 180-220 3.86e-03

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 38.09  E-value: 3.86e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 446722093 180 LLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMG 220
Cdd:COG0581  144 LREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAG 184
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 48-207 6.56e-03

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 37.93  E-value: 6.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093  48 FTLDNYTRLLDPLyFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLstk 127
Cdd:COG4135  342 WTLRFWQRAAPGL-LEPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLL--- 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446722093 128 gylneflLWLGvidtpirIMFTPSAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGI 207
Cdd:COG4135  418 -------LRLG-------LDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPI 483
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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