NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446723555|ref|WP_000800868|]
View 

MULTISPECIES: flagellar basal body L-ring protein FlgH [Enterobacteriaceae]

Protein Classification

flagellar basal body L-ring protein FlgH( domain architecture ID 10013961)

flagellar basal body L-ring protein FlgH assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation

Gene Ontology:  GO:0003774|GO:0009427|GO:0071973

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
flgH PRK12407
flagellar basal body L-ring protein FlgH;
1-221 6.70e-160

flagellar basal body L-ring protein FlgH;


:

Pssm-ID: 183507  Cd Length: 221  Bit Score: 440.84  E-value: 6.70e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555   1 MKNYLWLVALLPLLSGCESQAILVKKDDAYFAPPKTEAPPPADGRAGGVFETGYNWSLTADRRAYRVGDILTVILEESTQ 80
Cdd:PRK12407   1 MKRFLILTALLLALCGCESPALLVQKDDAEFAPPANLIQPATVTEGGGLFQPGYNWSLLQDRRAYRVGDILTVILDESTQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  81 SSKQAKTNFGKSNTVDIGAPTIFGHTKDKLSGSIDANRDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLN 160
Cdd:PRK12407  81 SSKQAKTNFGKKNDVSLGVPEVLGKKLDKLGGSISGKRDFDGSATSAQQNMLRGSITVAVHQVLPNGVLVIRGEKWLTLN 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446723555 161 QGDEYIRLSGLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRLFNHPLFPI 221
Cdd:PRK12407 161 QGDEYMRVTGLVRADDIARDNSVSSQRIANARISYAGRGALSDANSAGWLTRFFNHPLFPI 221
 
Name Accession Description Interval E-value
flgH PRK12407
flagellar basal body L-ring protein FlgH;
1-221 6.70e-160

flagellar basal body L-ring protein FlgH;


Pssm-ID: 183507  Cd Length: 221  Bit Score: 440.84  E-value: 6.70e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555   1 MKNYLWLVALLPLLSGCESQAILVKKDDAYFAPPKTEAPPPADGRAGGVFETGYNWSLTADRRAYRVGDILTVILEESTQ 80
Cdd:PRK12407   1 MKRFLILTALLLALCGCESPALLVQKDDAEFAPPANLIQPATVTEGGGLFQPGYNWSLLQDRRAYRVGDILTVILDESTQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  81 SSKQAKTNFGKSNTVDIGAPTIFGHTKDKLSGSIDANRDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLN 160
Cdd:PRK12407  81 SSKQAKTNFGKKNDVSLGVPEVLGKKLDKLGGSISGKRDFDGSATSAQQNMLRGSITVAVHQVLPNGVLVIRGEKWLTLN 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446723555 161 QGDEYIRLSGLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRLFNHPLFPI 221
Cdd:PRK12407 161 QGDEYMRVTGLVRADDIARDNSVSSQRIANARISYAGRGALSDANSAGWLTRFFNHPLFPI 221
FlgH COG2063
Flagellar basal body L-ring protein FlgH [Cell motility];
15-218 1.39e-91

Flagellar basal body L-ring protein FlgH [Cell motility];


Pssm-ID: 441666  Cd Length: 218  Bit Score: 267.81  E-value: 1.39e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  15 SGCESQAILVKKDDAYFAPPKTEAPPPADGRAGGVFETGYNWSLTADRRAYRVGDILTVILEESTQSSKQAKTNFGKSNT 94
Cdd:COG2063   10 AGCASVPPEPVVDDPAYAPVMPAPPPAAPPANGSLFQAGGSRPLFEDRRARRVGDILTVVIVENTSASKSASTSRSRSSS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  95 VDIGAPTIFGHTK-----DKLSGSIDANRDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYIRLS 169
Cdd:COG2063   90 VSLGIPTLFGLPGsllggPNLSVSASSSSSFKGKGSASRSNSLTGTITATVVEVLPNGNLVVRGEKEVRVNQGLEYIRLS 169

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 446723555 170 GLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRLFNHPL 218
Cdd:COG2063  170 GIVRPEDISPDNTVSSTKIADARIEYGGRGALADAQQPGWLQRFFDSVL 218
FlgH pfam02107
Flagellar L-ring protein;
46-220 1.22e-73

Flagellar L-ring protein;


Pssm-ID: 426604  Cd Length: 175  Bit Score: 220.85  E-value: 1.22e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555   46 AGGVFETGYNWSLTADRRAYRVGDILTVILEESTQSSKQAKTNFGKSNTVDIGAPtiFGHTKDKLSGSIDANRDFDGSAT 125
Cdd:pfam02107   4 NGSLWQAGSARPLFEDRRARRVGDILTVVIVENTSASKSASTNTSRSSSANAGAG--LGGLDLSASLGASSSSSFKGKGS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  126 SQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYIRLSGLVRADDIQNDNSVSSQRIADARISYAGRGALSDAN 205
Cdd:pfam02107  82 TSRSNSLTGTITATVVEVLPNGNLVIEGEKEVRVNQETEYIRLSGIVRPEDISADNTVSSTRIADARIEYGGRGVLADAQ 161

                         170
                  ....*....|....*
gi 446723555  206 AAGWLTRLFNHpLFP 220
Cdd:pfam02107 162 QPGWLTRFFDS-IWP 175
 
Name Accession Description Interval E-value
flgH PRK12407
flagellar basal body L-ring protein FlgH;
1-221 6.70e-160

flagellar basal body L-ring protein FlgH;


Pssm-ID: 183507  Cd Length: 221  Bit Score: 440.84  E-value: 6.70e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555   1 MKNYLWLVALLPLLSGCESQAILVKKDDAYFAPPKTEAPPPADGRAGGVFETGYNWSLTADRRAYRVGDILTVILEESTQ 80
Cdd:PRK12407   1 MKRFLILTALLLALCGCESPALLVQKDDAEFAPPANLIQPATVTEGGGLFQPGYNWSLLQDRRAYRVGDILTVILDESTQ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  81 SSKQAKTNFGKSNTVDIGAPTIFGHTKDKLSGSIDANRDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLN 160
Cdd:PRK12407  81 SSKQAKTNFGKKNDVSLGVPEVLGKKLDKLGGSISGKRDFDGSATSAQQNMLRGSITVAVHQVLPNGVLVIRGEKWLTLN 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 446723555 161 QGDEYIRLSGLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRLFNHPLFPI 221
Cdd:PRK12407 161 QGDEYMRVTGLVRADDIARDNSVSSQRIANARISYAGRGALSDANSAGWLTRFFNHPLFPI 221
FlgH COG2063
Flagellar basal body L-ring protein FlgH [Cell motility];
15-218 1.39e-91

Flagellar basal body L-ring protein FlgH [Cell motility];


Pssm-ID: 441666  Cd Length: 218  Bit Score: 267.81  E-value: 1.39e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  15 SGCESQAILVKKDDAYFAPPKTEAPPPADGRAGGVFETGYNWSLTADRRAYRVGDILTVILEESTQSSKQAKTNFGKSNT 94
Cdd:COG2063   10 AGCASVPPEPVVDDPAYAPVMPAPPPAAPPANGSLFQAGGSRPLFEDRRARRVGDILTVVIVENTSASKSASTSRSRSSS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  95 VDIGAPTIFGHTK-----DKLSGSIDANRDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYIRLS 169
Cdd:COG2063   90 VSLGIPTLFGLPGsllggPNLSVSASSSSSFKGKGSASRSNSLTGTITATVVEVLPNGNLVVRGEKEVRVNQGLEYIRLS 169

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 446723555 170 GLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRLFNHPL 218
Cdd:COG2063  170 GIVRPEDISPDNTVSSTKIADARIEYGGRGALADAQQPGWLQRFFDSVL 218
flgH PRK00249
flagellar basal body L-ring protein FlgH;
15-215 4.52e-81

flagellar basal body L-ring protein FlgH;


Pssm-ID: 234700  Cd Length: 222  Bit Score: 241.30  E-value: 4.52e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  15 SGCESQAILVKKD-DAYFAPPKTEAPPPADGRAGGVFETGYNWS-----LTADRRAYRVGDILTVILEESTQSSKQAKTN 88
Cdd:PRK00249   8 AGCASIPRLPLVGgAPAAAPVEAPTPLPNPAPNGSIFQAGSLWNygyqpLFKDRRARNVGDILTVVLQENTSASKSNSTN 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  89 FGKSNTVDIGAPTIFG---HTKDKLSGSIDANRDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEY 165
Cdd:PRK00249  88 RSRDSSTNFGLPSLFGylnGLDANASLETSSDNSFKGKGSASRSNTLTGTITVTVTQVLPNGNLVIRGEKEVRVNQGTEF 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 446723555 166 IRLSGLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRLFN 215
Cdd:PRK00249 168 LRVSGVVRPRDISGDNTISSTRIADARISYGGRGYISDAQQPGWLQRFFD 217
FlgH pfam02107
Flagellar L-ring protein;
46-220 1.22e-73

Flagellar L-ring protein;


Pssm-ID: 426604  Cd Length: 175  Bit Score: 220.85  E-value: 1.22e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555   46 AGGVFETGYNWSLTADRRAYRVGDILTVILEESTQSSKQAKTNFGKSNTVDIGAPtiFGHTKDKLSGSIDANRDFDGSAT 125
Cdd:pfam02107   4 NGSLWQAGSARPLFEDRRARRVGDILTVVIVENTSASKSASTNTSRSSSANAGAG--LGGLDLSASLGASSSSSFKGKGS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  126 SQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYIRLSGLVRADDIQNDNSVSSQRIADARISYAGRGALSDAN 205
Cdd:pfam02107  82 TSRSNSLTGTITATVVEVLPNGNLVIEGEKEVRVNQETEYIRLSGIVRPEDISADNTVSSTRIADARIEYGGRGVLADAQ 161

                         170
                  ....*....|....*
gi 446723555  206 AAGWLTRLFNHpLFP 220
Cdd:pfam02107 162 QPGWLTRFFDS-IWP 175
flgH PRK12698
flagellar basal body L-ring protein FlgH;
15-220 3.58e-72

flagellar basal body L-ring protein FlgH;


Pssm-ID: 183690  Cd Length: 224  Bit Score: 218.82  E-value: 3.58e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  15 SGCESQAILVKKDDAYFAPPKTEAPPPADGRAGGVFETGYNWSLTADRRAYRVGDILTVILEESTQSSKQAKTNFGKSNT 94
Cdd:PRK12698  14 SGCSSTPEKPIADDPYYAPVYPEAPPTKIAATGSIFQDSQANSLYSDIKAHKVGDIITVVLKESTQAKKSANNEIKKGSD 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  95 VDIGAPTIFGHT----KDKLSGSIDANRDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYIRLSG 170
Cdd:PRK12698  94 LSLDPIYAGGGNvsigGVPLDLGYKDSMNTKRESDADQSNSLSGSISANVMQVLPNGNLVIRGEKWISINNGDEFIRLTG 173

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 446723555 171 LVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRLFNHPLFP 220
Cdd:PRK12698 174 IVRSQDITPDNTIDSTRVANARIQYSGTGTFADAQKVGWLSQFFMSDWWP 223
flgH PRK12701
flagellar basal body L-ring protein; Reviewed
 16-220 5.83e-47

flagellar basal body L-ring protein; Reviewed


Pssm-ID: 183691  Cd Length: 230  Bit Score: 154.93  E-value: 5.83e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  16 GCESQAILVKKDDAYFAPPKTEAPPPADGR--AGGVFETGYNWSLTADRRAYRVGDILTVILEESTQSSKQAKTNFGKSN 93
Cdd:PRK12701  18 GCEALHPPAPGDNPDYAPTYPVTPDPKELRkvSGAIYSSETALPLFETPRARHPGDILTVYLIEKTDAQKNATTTQRKND 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  94 TVDIGAPTIFGHTKDKLSG-----SIDANRDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYIRL 168
Cdd:PRK12701  98 TTKITNKLFLGRPISLGSGysmdfDLDNQRQFNGEGRSIQNNKLAGSISVTVAKVLANGNMVVQGEKWVRINQGNEFVRL 177

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 446723555 169 SGLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRLFNHPLFP 220
Cdd:PRK12701 178 SGIVRPQDIKADNTITSDRIANARISYGGTGQINNTNAQGWLSRILWGPLFP 229
flgH PRK12699
flagellar basal body L-ring protein; Reviewed
 33-214 1.46e-44

flagellar basal body L-ring protein; Reviewed


Pssm-ID: 105864  Cd Length: 246  Bit Score: 148.94  E-value: 1.46e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  33 PPKTEAPPPADGrAGGVFETGYNW-------SLTADRRAYRVGDILTVILEESTQSSKQAKTNFGKSNTVDIGAPTIFGH 105
Cdd:PRK12699  50 PPDLPLIPPSQG-NGGIYQAAFDYqgrgryhPLFEDRRARQIGDTIIVLLNEKTNASKKSGSNAQRNGDISLSVPSFLGL 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555 106 TKDKLSGSID----ANRDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYIRLSGLVRADDIQNdN 181
Cdd:PRK12699 129 PFKSIFQDLDleasSSNKFDGKGESSSNNNFTGTITVTVVDILPNGNLLVSGEKQIGINQGHEFIRLSGVINPINVIN-N 207

                        170       180       190
                 ....*....|....*....|....*....|...
gi 446723555 182 SVSSQRIADARISYAGRGALSDANAAGWLTRLF 214
Cdd:PRK12699 208 TVSSIQVADARIEYRGNGYLDEAQTMGWLSRFF 240
flgH PRK12700
flagellar basal body L-ring protein; Reviewed
 34-214 1.64e-42

flagellar basal body L-ring protein; Reviewed


Pssm-ID: 139164  Cd Length: 230  Bit Score: 143.27  E-value: 1.64e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  34 PKTEAPPPADGRA----GGVFE-TGY-NWSLTADRRAYRVGDILTVILEESTQSSKQAKTNFGKSNTVDIG---APTIF- 103
Cdd:PRK12700  34 PLTAPPPPPPQPSarpnGSIYQpSAYgNYPLFEDRRPRNVGDIVTIVLEEKTNAAKGVATNTSRDGSATLGvaaAPRFMd 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555 104 GHTKDKLSGSIDANRDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYIRLSGLVRADDIQNDNSV 183
Cdd:PRK12700 114 GVINDKLDTDISGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQIAGEKQIAINRGSEYVRFSGVVDPRSITGSNTV 193

                        170       180       190
                 ....*....|....*....|....*....|.
gi 446723555 184 SSQRIADARISYAGRGALSDANAAGWLTRLF 214
Cdd:PRK12700 194 SSTRVADARIEYRSKGVMDEVQTMGWLQRFF 224
flgH PRK12697
flagellar basal body L-ring protein FlgH;
15-214 4.12e-39

flagellar basal body L-ring protein FlgH;


Pssm-ID: 237175  Cd Length: 226  Bit Score: 134.61  E-value: 4.12e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  15 SGCEsqaiLVKKDDAYFAPPKTEAPPPADGRA-GGVFETGY-NWSLTADRRAYRVGDILTVILEESTQSSKQAKTNFGKS 92
Cdd:PRK12697  21 AGCA----QIPREPITQQPMTAQPPMPPSMQApGSIYNPGYaGRPLFEDQRPRNVGDILTIVIAENINATKSSGANTNRQ 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  93 NTVDIGAPT------IFGHTKDKLSGsidANRdFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYI 166
Cdd:PRK12697  97 GNTDFDVPTagflggLFNKANLSAQG---ANK-FAATGGASAANTFNGTITVTVTNVLPNGNLVVSGEKQMLINQGNEFV 172

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 446723555 167 RLSGLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRLF 214
Cdd:PRK12697 173 RFSGVVNPNTISGANSVYSTQVADARIEYSAKGYINEAETMGWLQRFF 220
flgH PRK12696
flagellar basal body L-ring protein; Reviewed
 32-213 1.90e-33

flagellar basal body L-ring protein; Reviewed


Pssm-ID: 237174  Cd Length: 236  Bit Score: 120.24  E-value: 1.90e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  32 APPKTEAPPPADGR-AGGVFETGYNWSLTADRRAYRVGDILTVILEESTQSSKQAKTNFGKSNTVDIGAPTIFGHTK--- 107
Cdd:PRK12696  32 TPPPAYVEPEEPADnPGSLFSDSEADLLFADSRARRVGDIVLVKIVENSKAKNKADTTADKKSTNEYGVSAFFGQDSvai 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555 108 ----DKLSGSIDAN--------RDFDGSATSQQQNSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYIRLSGLVRAD 175
Cdd:PRK12696 112 npfnPLMGGGVGTDpllktsstSKFSGTGETKRESTVTATIAARVVRVLPGGLMQVEGARETRVNDETQYIVVSGLVRPR 191

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 446723555 176 DIQNDNSVSSQRIADARISYAGRGALSDANAAGWLTRL 213
Cdd:PRK12696 192 DIGPDNSVMSTQLADARIEYYGKGVLADKQRPGWFTRL 229
flgH PRK12788
flagellar basal body L-ring protein FlgH;
58-215 6.70e-20

flagellar basal body L-ring protein FlgH;


Pssm-ID: 237202  Cd Length: 234  Bit Score: 84.59  E-value: 6.70e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555  58 LTADRRAYRVGDILTVI--------LEESTQSSKQAKTNFGKSNTVDIgAPTifgHTKDKLSGSIDANRDFDGSATSQQQ 129
Cdd:PRK12788  68 LYRDPRASRTGDLLTVTismndkatLDNKTDRSRDSQTKFGLDYLAEF-LPW---SDKGKLTANVSSQTSTKGTGKIDRT 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446723555 130 NSLRGEITVSVHAVQPNGILEIRGEKWLTLNQGDEYIRLSGLVRADDIQNDNSVSSQRIADARISYAGRGALSDANAAGW 209
Cdd:PRK12788 144 EEVKFSVAAIVVDVLPNGNLLISGSQEVRVNYEMRVLNVGGIVRPLDITRNNTIAYEKVAEARISYGGRGRLMEVQQPAW 223


                 ....*.
gi 446723555 210 LTRLFN 215
Cdd:PRK12788 224 GHQVYD 229
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH