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Conserved domains on  [gi|446726368|ref|WP_000803681|]
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MULTISPECIES: type III secretion system LEE ring protein EscQ [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SepQ super family cl30948
SepQ protein; This family consists of several enterobacterial SepQ proteins from Escherichia ...
1-305 0e+00

SepQ protein; This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.


The actual alignment was detected with superfamily member pfam06622:

Pssm-ID: 115292  Cd Length: 305  Bit Score: 619.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368    1 MKPLSSQLNMKINDFYLPLLPVIGTGRLYITSEGHACHAYFREVSGHGIRFTLTYSGYEGRFWISEEQFIQWCQELFPYS 80
Cdd:pfam06622   1 MKLLNSQLNMKINDFYLPLLPVIGIGRLYITPEGHACHAYFREVSGNGFRFTLACSGYEGCFWISEEQFIQWCHELFPYS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368   81 ESRLIPEDTIKLMILWVMQTALPEGDVSVDDVQFTMLNKDVYPVIENNNGKNRLNVIILETTVQSLQYLINDNWQFVPHS 160
Cdd:pfam06622  81 DSRLIPEDMIKLMILWAIHAALPEDDASVDDVQFTMLNKDIYPVIENNNGENRLNVIILEITVQSLQYLINDNWQFVPHS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368  161 NTLFFDGYIVPGWTDYPVTELRVGDSLRLYHVDDSQERRCWLVINNPLATVKLSDNNLSITDVQAADPLCTISSETVMNR 240
Cdd:pfam06622 161 NTIFFDGYIAPGWTDYPITELSIGDSLRLYHVDDSKERECWLVINNPLATVKLCDNNLFIADVQAADLLCIISNEAVMDR 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446726368  241 IYCAIGTINVDIHMLRNVQKDDIIDSTGYHLLGGCQLVRNNITIAYGSIIKINEDFYFTISVVCD 305
Cdd:pfam06622 241 IYCAIGTIHVDIHKLRNAKKDDIIDSTGYHLFGGCRLIRNNTIIAYGSIIKINEDFYFNISLVCD 305
 
Name Accession Description Interval E-value
SepQ pfam06622
SepQ protein; This family consists of several enterobacterial SepQ proteins from Escherichia ...
1-305 0e+00

SepQ protein; This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.


Pssm-ID: 115292  Cd Length: 305  Bit Score: 619.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368    1 MKPLSSQLNMKINDFYLPLLPVIGTGRLYITSEGHACHAYFREVSGHGIRFTLTYSGYEGRFWISEEQFIQWCQELFPYS 80
Cdd:pfam06622   1 MKLLNSQLNMKINDFYLPLLPVIGIGRLYITPEGHACHAYFREVSGNGFRFTLACSGYEGCFWISEEQFIQWCHELFPYS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368   81 ESRLIPEDTIKLMILWVMQTALPEGDVSVDDVQFTMLNKDVYPVIENNNGKNRLNVIILETTVQSLQYLINDNWQFVPHS 160
Cdd:pfam06622  81 DSRLIPEDMIKLMILWAIHAALPEDDASVDDVQFTMLNKDIYPVIENNNGENRLNVIILEITVQSLQYLINDNWQFVPHS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368  161 NTLFFDGYIVPGWTDYPVTELRVGDSLRLYHVDDSQERRCWLVINNPLATVKLSDNNLSITDVQAADPLCTISSETVMNR 240
Cdd:pfam06622 161 NTIFFDGYIAPGWTDYPITELSIGDSLRLYHVDDSKERECWLVINNPLATVKLCDNNLFIADVQAADLLCIISNEAVMDR 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446726368  241 IYCAIGTINVDIHMLRNVQKDDIIDSTGYHLLGGCQLVRNNITIAYGSIIKINEDFYFTISVVCD 305
Cdd:pfam06622 241 IYCAIGTIHVDIHKLRNAKKDDIIDSTGYHLFGGCRLIRNNTIIAYGSIIKINEDFYFNISLVCD 305
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
44-301 8.32e-09

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 55.59  E-value: 8.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368  44 VSGHGIRFTLTYSGYEGRFWISEEQFIQWCQELFPYSESRLIPEDTIKLMILWVMQTALPEGDVsvddvqfTMLNKDVyP 123
Cdd:PRK08035  34 VQGEGVYFTLHYHGELCGLWLSEQCWQRWCEGLIGTANPSLIAPELLYGIAEWGLTPLLQAFDA-------TLCQNES-P 105
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368 124 VIENNNGKNRLNVIILETTVQSLQYLINDnW------QFVPH--------SNTLFFDGYIVPGWTDYPVTELR---VGDS 186
Cdd:PRK08035 106 TSCSSLPKQLAVTIKWEVEEQEFHGVLFT-WptaflrNTLGEwsaerqqiYPALPWVVGLVAGWCHLTLIQLEqiePGMG 184
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368 187 LRLYHVDDSQERRCWLVI-NNPLATVKLS-DNNLSITD-VQAADPL-------------CTISSETVMNRIYCAIGTINV 250
Cdd:PRK08035 185 LRLHCAGELRLGFCWLWLpGGIQAYILLTeGNTMTIDElNQDIDTLlasgspmskspgtSSVELEQLPQQVVMEIGRLSL 264
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446726368 251 DIHMLRNVQKDDIIDSTGyHLLGGCQLVRNNITIAYGSIIKINEDFYFTIS 301
Cdd:PRK08035 265 PIGQLRQLAVGDVLPVGG-CFYPEVTIRLNGRIIGQGELLACDNELMVRIT 314
 
Name Accession Description Interval E-value
SepQ pfam06622
SepQ protein; This family consists of several enterobacterial SepQ proteins from Escherichia ...
1-305 0e+00

SepQ protein; This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.


Pssm-ID: 115292  Cd Length: 305  Bit Score: 619.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368    1 MKPLSSQLNMKINDFYLPLLPVIGTGRLYITSEGHACHAYFREVSGHGIRFTLTYSGYEGRFWISEEQFIQWCQELFPYS 80
Cdd:pfam06622   1 MKLLNSQLNMKINDFYLPLLPVIGIGRLYITPEGHACHAYFREVSGNGFRFTLACSGYEGCFWISEEQFIQWCHELFPYS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368   81 ESRLIPEDTIKLMILWVMQTALPEGDVSVDDVQFTMLNKDVYPVIENNNGKNRLNVIILETTVQSLQYLINDNWQFVPHS 160
Cdd:pfam06622  81 DSRLIPEDMIKLMILWAIHAALPEDDASVDDVQFTMLNKDIYPVIENNNGENRLNVIILEITVQSLQYLINDNWQFVPHS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368  161 NTLFFDGYIVPGWTDYPVTELRVGDSLRLYHVDDSQERRCWLVINNPLATVKLSDNNLSITDVQAADPLCTISSETVMNR 240
Cdd:pfam06622 161 NTIFFDGYIAPGWTDYPITELSIGDSLRLYHVDDSKERECWLVINNPLATVKLCDNNLFIADVQAADLLCIISNEAVMDR 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446726368  241 IYCAIGTINVDIHMLRNVQKDDIIDSTGYHLLGGCQLVRNNITIAYGSIIKINEDFYFTISVVCD 305
Cdd:pfam06622 241 IYCAIGTIHVDIHKLRNAKKDDIIDSTGYHLFGGCRLIRNNTIIAYGSIIKINEDFYFNISLVCD 305
PRK08035 PRK08035
YscQ/HrcQ family type III secretion apparatus protein;
44-301 8.32e-09

YscQ/HrcQ family type III secretion apparatus protein;


Pssm-ID: 181204 [Multi-domain]  Cd Length: 323  Bit Score: 55.59  E-value: 8.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368  44 VSGHGIRFTLTYSGYEGRFWISEEQFIQWCQELFPYSESRLIPEDTIKLMILWVMQTALPEGDVsvddvqfTMLNKDVyP 123
Cdd:PRK08035  34 VQGEGVYFTLHYHGELCGLWLSEQCWQRWCEGLIGTANPSLIAPELLYGIAEWGLTPLLQAFDA-------TLCQNES-P 105
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368 124 VIENNNGKNRLNVIILETTVQSLQYLINDnW------QFVPH--------SNTLFFDGYIVPGWTDYPVTELR---VGDS 186
Cdd:PRK08035 106 TSCSSLPKQLAVTIKWEVEEQEFHGVLFT-WptaflrNTLGEwsaerqqiYPALPWVVGLVAGWCHLTLIQLEqiePGMG 184
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446726368 187 LRLYHVDDSQERRCWLVI-NNPLATVKLS-DNNLSITD-VQAADPL-------------CTISSETVMNRIYCAIGTINV 250
Cdd:PRK08035 185 LRLHCAGELRLGFCWLWLpGGIQAYILLTeGNTMTIDElNQDIDTLlasgspmskspgtSSVELEQLPQQVVMEIGRLSL 264
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 446726368 251 DIHMLRNVQKDDIIDSTGyHLLGGCQLVRNNITIAYGSIIKINEDFYFTIS 301
Cdd:PRK08035 265 PIGQLRQLAVGDVLPVGG-CFYPEVTIRLNGRIIGQGELLACDNELMVRIT 314
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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