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MULTISPECIES: single-stranded-DNA-specific exonuclease RecJ [Salmonella]
Protein Classification
single-stranded-DNA-specific exonuclease RecJ ( domain architecture ID 11485183 )
single-stranded-DNA-specific exonuclease RecJ is a specific 5'-3' exonuclease that plays an important role in DNA repair and recombination
List of domain hits
Name
Accession
Description
Interval
E-value
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
3-577
0e+00
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 1238.03
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 3 QQ R QLRRREADETA E LPADLPPLLRRLYASRGVRSA R ELERSVKG M LPWQQLSGI DN AVE I LYNA F REG I RIIVVGDFDA 82
Cdd:PRK11070 1 QQ I QLRRREADETA D LPADLPPLLRRLYASRGVRSA Q ELERSVKG L LPWQQLSGI EK AVE L LYNA L REG T RIIVVGDFDA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 83 DGATSTALSVL GM R A LGC D N IS YLVPNRFEDGYGLSPEVVDQA K ARGAQLIVTVDNGISSHAGVAHA KT LGIPV I VTDHH 162
Cdd:PRK11070 81 DGATSTALSVL AL R S LGC S N VD YLVPNRFEDGYGLSPEVVDQA H ARGAQLIVTVDNGISSHAGVAHA HA LGIPV L VTDHH 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 163 LPG D TLP D A E AIINPNLRDC E FPSKSLAGVGVAFYLMLALR T FLRD K GWFDERGIA P PNLAELLDLVALGTVADVVPLDA 242
Cdd:PRK11070 161 LPG E TLP A A D AIINPNLRDC N FPSKSLAGVGVAFYLMLALR A FLRD Q GWFDERGIA I PNLAELLDLVALGTVADVVPLDA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 243 NNRIL T WQGLSRIRAGKCRPGIKALLE IS NRD P Q Q LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN L GEARVLA S EL 322
Cdd:PRK11070 241 NNRIL V WQGLSRIRAGKCRPGIKALLE VA NRD A Q K LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN I GEARVLA N EL 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 323 DALNQTRKEIEQGMQ A EAL I LCEKLERSS E TLP G GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 402
Cdd:PRK11070 321 DALNQTRKEIEQGMQ V EAL T LCEKLERSS D TLP Y GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 403 IQGLHMRDALERLDTLYP D L MI KFGGHAMAAGLSLEE H KF GQ FQQRFGELVTEWLDP A LLQG E V I SDG P LS A AEMS M EVA 482
Cdd:PRK11070 401 IQGLHMRDALERLDTLYP G L IL KFGGHAMAAGLSLEE D KF EL FQQRFGELVTEWLDP S LLQG V V W SDG E LS P AEMS L EVA 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 483 Q LLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN I DTT C WPDN G VREVELAYKLDINEFR 562
Cdd:PRK11070 481 E LLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN V DTT L WPDN S VREVELAYKLDINEFR 560
570
....*....|....*
gi 446736130 563 GNRSLQ I IID D IWP L 577
Cdd:PRK11070 561 GNRSLQ L IID H IWP I 575
Name
Accession
Description
Interval
E-value
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
3-577
0e+00
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 1238.03
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 3 QQ R QLRRREADETA E LPADLPPLLRRLYASRGVRSA R ELERSVKG M LPWQQLSGI DN AVE I LYNA F REG I RIIVVGDFDA 82
Cdd:PRK11070 1 QQ I QLRRREADETA D LPADLPPLLRRLYASRGVRSA Q ELERSVKG L LPWQQLSGI EK AVE L LYNA L REG T RIIVVGDFDA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 83 DGATSTALSVL GM R A LGC D N IS YLVPNRFEDGYGLSPEVVDQA K ARGAQLIVTVDNGISSHAGVAHA KT LGIPV I VTDHH 162
Cdd:PRK11070 81 DGATSTALSVL AL R S LGC S N VD YLVPNRFEDGYGLSPEVVDQA H ARGAQLIVTVDNGISSHAGVAHA HA LGIPV L VTDHH 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 163 LPG D TLP D A E AIINPNLRDC E FPSKSLAGVGVAFYLMLALR T FLRD K GWFDERGIA P PNLAELLDLVALGTVADVVPLDA 242
Cdd:PRK11070 161 LPG E TLP A A D AIINPNLRDC N FPSKSLAGVGVAFYLMLALR A FLRD Q GWFDERGIA I PNLAELLDLVALGTVADVVPLDA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 243 NNRIL T WQGLSRIRAGKCRPGIKALLE IS NRD P Q Q LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN L GEARVLA S EL 322
Cdd:PRK11070 241 NNRIL V WQGLSRIRAGKCRPGIKALLE VA NRD A Q K LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN I GEARVLA N EL 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 323 DALNQTRKEIEQGMQ A EAL I LCEKLERSS E TLP G GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 402
Cdd:PRK11070 321 DALNQTRKEIEQGMQ V EAL T LCEKLERSS D TLP Y GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 403 IQGLHMRDALERLDTLYP D L MI KFGGHAMAAGLSLEE H KF GQ FQQRFGELVTEWLDP A LLQG E V I SDG P LS A AEMS M EVA 482
Cdd:PRK11070 401 IQGLHMRDALERLDTLYP G L IL KFGGHAMAAGLSLEE D KF EL FQQRFGELVTEWLDP S LLQG V V W SDG E LS P AEMS L EVA 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 483 Q LLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN I DTT C WPDN G VREVELAYKLDINEFR 562
Cdd:PRK11070 481 E LLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN V DTT L WPDN S VREVELAYKLDINEFR 560
570
....*....|....*
gi 446736130 563 GNRSLQ I IID D IWP L 577
Cdd:PRK11070 561 GNRSLQ L IID H IWP I 575
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
1-558
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 763.10
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 1 M KQQ R QLRRREA D ETA ---- ELPAD L P PLL R RL Y A S RG VRSAR E ---- L ER S V K GMLPWQQ L SGI D N AVE I L YN A FRE G I 72
Cdd:COG0608 1 M STG R RWILKPP D PEL veal AKELG L S PLL A RL L A N RG ITTPE E aeaf L DP S L K DLHDPFL L KDM D K AVE R L AE A IEN G E 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 73 R I IVV GD F D A DGATSTAL S V LGM RALG C d N IS Y LV PNRFE D GYGL S PE V V DQ A KAR G AQ LI V TVD N GISSH AG VA H AK T L 152
Cdd:COG0608 81 K I LIY GD Y D V DGATSTAL L V RFL RALG A - N VD Y YI PNRFE E GYGL N PE A V ER A AEQ G VD LI I TVD C GISSH EE VA Y AK E L 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 153 GI P VIVTDHHLPG DT LP D A E AI I NP NLR DC EF P S K S LAGVGVAF Y L ML ALR TF LR DK gwfdergi AP P N LAELLDLVALG 232
Cdd:COG0608 160 GI D VIVTDHHLPG EE LP P A D AI V NP KRP DC DY P F K E LAGVGVAF K L AQ ALR RE LR ER -------- PE P D LAELLDLVALG 231
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 233 TVADVVPL DAN NRIL TW QGL S R I RA G K c RPG IK ALLE ISNR DP QQLA A S D L GFALGPR L NAAGRL D D M S V GV A LLL C D NL 312
Cdd:COG0608 232 TVADVVPL TGE NRIL VK QGL K R L RA T K - RPG LR ALLE VAGL DP KEIT A E D I GFALGPR I NAAGRL G D A S L GV E LLL T D DE 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 313 G EAR V LA S ELD A LN QT RKEIE QGMQA EAL ILC E K L E rs SETL P GG L AM Y HPE WH Q GV V GI L ASR I KE RF HRP V I AF A PAG 392
Cdd:COG0608 311 E EAR E LA E ELD E LN RE RKEIE AEITE EAL AQI E E L P -- DLED P KV L VL Y DED WH P GV I GI V ASR L KE KY HRP T I VL A IDE 388
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 393 DG TL KGS G RSI Q G LHMR DAL ERLD tlyp DL MI KFGGHAMAAGL S L E E HKFGQ F QQ RF G E L V T E W L DPAL L QGEVIS DG P L 472
Cdd:COG0608 389 DG IA KGS A RSI P G FDLY DAL DACS ---- DL LL KFGGHAMAAGL T L K E ENLEA F RE RF N E V V A E Q L AEED L EPVLEI DG E L 464
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 473 SAA E MSM E V A QL L RDAG P W GQ MF PEP L F D GR - F R LLQ QR L VG ER -- HLK VMVEP vg GG PL LD G IAFN IDTTC -- W P DN G V 547
Cdd:COG0608 465 PLS E LTL E L A EE L EQLE P F GQ GN PEP V F L GR n V R VVS QR I VG KD gn HLK LTLRD -- GG RR LD A IAFN AGDKL ee L P NA G K 542
570
....*....|.
gi 446736130 548 R e V EL AY K LDI 558
Cdd:COG0608 543 R - V DI AY T LDI 552
recJ
TIGR00644 single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' ...
22-574
0e+00
single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273193 [Multi-domain]
Cd Length: 539
Bit Score: 660.92
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 22 L P P L L RRLY ASRG VRS A R ELE RSVKGM L PWQQ ---- L SGIDN AVE I L YN A FREGIR I IVV GD F D A DG A TSTA LS V LGMRA 97
Cdd:TIGR00644 1 L G P I L AQIL ASRG ITD A E ELE NFLNPK L KDLP ppfl L LDMEK AVE R L IE A VENNEK I LIY GD Y D V DG I TSTA IL V EFLEL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 98 LG C d NIS Y LV PNRF ED GYG LS PE VVDQAKAR G AQ LI V TVDNGI SS H AGVAH AK T LG IP VIVTDHHL PGDT LP D A E AI I NP 177
Cdd:TIGR00644 81 LG V - KVD Y YI PNRF TE GYG PN PE AFRKLHED G VS LI I TVDNGI TA H EEIKY AK E LG LD VIVTDHHL VPED LP E A A AI V NP 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 178 N LR DC EF P S K S LAGVGVAF Y L ML AL RTF LR D kgwfdergi AP P N L A E L LDLVALGT V ADVVPL DAN NR I L TWQ GL SRI R A 257
Cdd:TIGR00644 160 N RP DC NY P Q K E LAGVGVAF K L VQ AL YEE LR K --------- PK P D L E E F LDLVALGT I ADVVPL TGE NR A L VKK GL KVL R K 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 258 G K c RPG I KALLE ISNR D PQQ L AAS D L GF AL GPR L NAAGRL D D M S V GV A LLL C D NLG EAR V LA S ELD A LNQ T RK E IEQ GMQ 337
Cdd:TIGR00644 231 Q K - RPG L KALLE VAGV D KDK L SST D I GF II GPR I NAAGRL G D A S L GV E LLL T D DPK EAR E LA E ELD S LNQ E RK D IEQ TVL 309
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 338 A EAL ILC E KL erss ET LPGGLAMYHPE WH Q GV V GI L ASR IK E RFHR PV IA FA P - A G D G TL KGSGRSI Q G LHMR DAL ERLD 416
Cdd:TIGR00644 310 E EAL AIA E AE ---- ET NDSVIVVAKEN WH E GV L GI V ASR LA E EYNK PV LV FA I d E G K G IA KGSGRSI S G IDLY DAL SEAR 385
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 417 TL ypd L MI KFGGHAMAAGLSL EEHKFGQ F QQRFG EL VTEW L DPALLQGEVIS DG P L SAAEMSM E VAQL L RDAG P W GQ MF P 496
Cdd:TIGR00644 386 ES --- L FL KFGGHAMAAGLSL KRENLEE F REKLN EL FSKS L EKDESEPILEV DG E L PPSDIDF E LIRQ L ESLE P F GQ GN P 462
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446736130 497 EPLF DG - RF R LLQQR L V G ER HLK VMVEP vg G GPLLDG IAFN IDTTCWPD NG VREVEL A Y KL D INE FR GN RSL Q I II D DI 574
Cdd:TIGR00644 463 EPLF VL k DL R VEDIK L L G GN HLK LSLKS -- G EKNIEA IAFN AGEQLLEL NG GEPIDV A G KL K INE WN GN KTP Q L II K DI 539
DHH
pfam01368 DHH family; It is predicted that this family of proteins all perform a phosphoesterase ...
73-233
1.04e-45
DHH family; It is predicted that this family of proteins all perform a phosphoesterase function. It included the single stranded DNA exonuclease RecJ.
Pssm-ID: 460177 [Multi-domain]
Cd Length: 145
Bit Score: 157.73
E-value: 1.04e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 73 R I IVV G DF -- D A DG AT S TALSVLGMRA L GCDNIS Y LV P N R F E D GYG LS PE VVDQAKAR g AQ L IV TVD N GI S S HA G VAH AK 150
Cdd:pfam01368 1 K I VIY G HY np D G DG IG S ALGLYRYLKE L VGPDVE Y YI P D R L E E GYG IN PE AIEELIDF - DT L LI TVD C GI K S VE G IEL AK 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 151 T LGI P VIV T DHHLP G D T LPDA E AIINP NLRDCE fpsksl AGVG V A F Y L M lalrtflrdkg WFDERGIAPPNLA EL L DL VA 230
Cdd:pfam01368 80 E LGI D VIV I DHHLP N D F LPDA D AIINP REPPAS ------ STSE V V F K L L ----------- QYAYGEEGKEIDK EL A DL LL 142
...
gi 446736130 231 LG T 233
Cdd:pfam01368 143 LG I 145
Name
Accession
Description
Interval
E-value
PRK11070
PRK11070 single-stranded-DNA-specific exonuclease RecJ;
3-577
0e+00
single-stranded-DNA-specific exonuclease RecJ;
Pssm-ID: 182944 [Multi-domain]
Cd Length: 575
Bit Score: 1238.03
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 3 QQ R QLRRREADETA E LPADLPPLLRRLYASRGVRSA R ELERSVKG M LPWQQLSGI DN AVE I LYNA F REG I RIIVVGDFDA 82
Cdd:PRK11070 1 QQ I QLRRREADETA D LPADLPPLLRRLYASRGVRSA Q ELERSVKG L LPWQQLSGI EK AVE L LYNA L REG T RIIVVGDFDA 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 83 DGATSTALSVL GM R A LGC D N IS YLVPNRFEDGYGLSPEVVDQA K ARGAQLIVTVDNGISSHAGVAHA KT LGIPV I VTDHH 162
Cdd:PRK11070 81 DGATSTALSVL AL R S LGC S N VD YLVPNRFEDGYGLSPEVVDQA H ARGAQLIVTVDNGISSHAGVAHA HA LGIPV L VTDHH 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 163 LPG D TLP D A E AIINPNLRDC E FPSKSLAGVGVAFYLMLALR T FLRD K GWFDERGIA P PNLAELLDLVALGTVADVVPLDA 242
Cdd:PRK11070 161 LPG E TLP A A D AIINPNLRDC N FPSKSLAGVGVAFYLMLALR A FLRD Q GWFDERGIA I PNLAELLDLVALGTVADVVPLDA 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 243 NNRIL T WQGLSRIRAGKCRPGIKALLE IS NRD P Q Q LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN L GEARVLA S EL 322
Cdd:PRK11070 241 NNRIL V WQGLSRIRAGKCRPGIKALLE VA NRD A Q K LAASDLGFALGPRLNAAGRLDDMSVGVALLLCDN I GEARVLA N EL 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 323 DALNQTRKEIEQGMQ A EAL I LCEKLERSS E TLP G GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 402
Cdd:PRK11070 321 DALNQTRKEIEQGMQ V EAL T LCEKLERSS D TLP Y GLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSGRS 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 403 IQGLHMRDALERLDTLYP D L MI KFGGHAMAAGLSLEE H KF GQ FQQRFGELVTEWLDP A LLQG E V I SDG P LS A AEMS M EVA 482
Cdd:PRK11070 401 IQGLHMRDALERLDTLYP G L IL KFGGHAMAAGLSLEE D KF EL FQQRFGELVTEWLDP S LLQG V V W SDG E LS P AEMS L EVA 480
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 483 Q LLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN I DTT C WPDN G VREVELAYKLDINEFR 562
Cdd:PRK11070 481 E LLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFN V DTT L WPDN S VREVELAYKLDINEFR 560
570
....*....|....*
gi 446736130 563 GNRSLQ I IID D IWP L 577
Cdd:PRK11070 561 GNRSLQ L IID H IWP I 575
RecJ
COG0608 ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication ...
1-558
0e+00
ssDNA-specific exonuclease RecJ, DHH superfamily, may be involved in archaeal DNA replication intiation [Replication, recombination and repair];
Pssm-ID: 440373 [Multi-domain]
Cd Length: 552
Bit Score: 763.10
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 1 M KQQ R QLRRREA D ETA ---- ELPAD L P PLL R RL Y A S RG VRSAR E ---- L ER S V K GMLPWQQ L SGI D N AVE I L YN A FRE G I 72
Cdd:COG0608 1 M STG R RWILKPP D PEL veal AKELG L S PLL A RL L A N RG ITTPE E aeaf L DP S L K DLHDPFL L KDM D K AVE R L AE A IEN G E 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 73 R I IVV GD F D A DGATSTAL S V LGM RALG C d N IS Y LV PNRFE D GYGL S PE V V DQ A KAR G AQ LI V TVD N GISSH AG VA H AK T L 152
Cdd:COG0608 81 K I LIY GD Y D V DGATSTAL L V RFL RALG A - N VD Y YI PNRFE E GYGL N PE A V ER A AEQ G VD LI I TVD C GISSH EE VA Y AK E L 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 153 GI P VIVTDHHLPG DT LP D A E AI I NP NLR DC EF P S K S LAGVGVAF Y L ML ALR TF LR DK gwfdergi AP P N LAELLDLVALG 232
Cdd:COG0608 160 GI D VIVTDHHLPG EE LP P A D AI V NP KRP DC DY P F K E LAGVGVAF K L AQ ALR RE LR ER -------- PE P D LAELLDLVALG 231
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 233 TVADVVPL DAN NRIL TW QGL S R I RA G K c RPG IK ALLE ISNR DP QQLA A S D L GFALGPR L NAAGRL D D M S V GV A LLL C D NL 312
Cdd:COG0608 232 TVADVVPL TGE NRIL VK QGL K R L RA T K - RPG LR ALLE VAGL DP KEIT A E D I GFALGPR I NAAGRL G D A S L GV E LLL T D DE 310
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 313 G EAR V LA S ELD A LN QT RKEIE QGMQA EAL ILC E K L E rs SETL P GG L AM Y HPE WH Q GV V GI L ASR I KE RF HRP V I AF A PAG 392
Cdd:COG0608 311 E EAR E LA E ELD E LN RE RKEIE AEITE EAL AQI E E L P -- DLED P KV L VL Y DED WH P GV I GI V ASR L KE KY HRP T I VL A IDE 388
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 393 DG TL KGS G RSI Q G LHMR DAL ERLD tlyp DL MI KFGGHAMAAGL S L E E HKFGQ F QQ RF G E L V T E W L DPAL L QGEVIS DG P L 472
Cdd:COG0608 389 DG IA KGS A RSI P G FDLY DAL DACS ---- DL LL KFGGHAMAAGL T L K E ENLEA F RE RF N E V V A E Q L AEED L EPVLEI DG E L 464
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 473 SAA E MSM E V A QL L RDAG P W GQ MF PEP L F D GR - F R LLQ QR L VG ER -- HLK VMVEP vg GG PL LD G IAFN IDTTC -- W P DN G V 547
Cdd:COG0608 465 PLS E LTL E L A EE L EQLE P F GQ GN PEP V F L GR n V R VVS QR I VG KD gn HLK LTLRD -- GG RR LD A IAFN AGDKL ee L P NA G K 542
570
....*....|.
gi 446736130 548 R e V EL AY K LDI 558
Cdd:COG0608 543 R - V DI AY T LDI 552
recJ
TIGR00644 single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' ...
22-574
0e+00
single-stranded-DNA-specific exonuclease RecJ; All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273193 [Multi-domain]
Cd Length: 539
Bit Score: 660.92
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 22 L P P L L RRLY ASRG VRS A R ELE RSVKGM L PWQQ ---- L SGIDN AVE I L YN A FREGIR I IVV GD F D A DG A TSTA LS V LGMRA 97
Cdd:TIGR00644 1 L G P I L AQIL ASRG ITD A E ELE NFLNPK L KDLP ppfl L LDMEK AVE R L IE A VENNEK I LIY GD Y D V DG I TSTA IL V EFLEL 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 98 LG C d NIS Y LV PNRF ED GYG LS PE VVDQAKAR G AQ LI V TVDNGI SS H AGVAH AK T LG IP VIVTDHHL PGDT LP D A E AI I NP 177
Cdd:TIGR00644 81 LG V - KVD Y YI PNRF TE GYG PN PE AFRKLHED G VS LI I TVDNGI TA H EEIKY AK E LG LD VIVTDHHL VPED LP E A A AI V NP 159
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 178 N LR DC EF P S K S LAGVGVAF Y L ML AL RTF LR D kgwfdergi AP P N L A E L LDLVALGT V ADVVPL DAN NR I L TWQ GL SRI R A 257
Cdd:TIGR00644 160 N RP DC NY P Q K E LAGVGVAF K L VQ AL YEE LR K --------- PK P D L E E F LDLVALGT I ADVVPL TGE NR A L VKK GL KVL R K 230
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 258 G K c RPG I KALLE ISNR D PQQ L AAS D L GF AL GPR L NAAGRL D D M S V GV A LLL C D NLG EAR V LA S ELD A LNQ T RK E IEQ GMQ 337
Cdd:TIGR00644 231 Q K - RPG L KALLE VAGV D KDK L SST D I GF II GPR I NAAGRL G D A S L GV E LLL T D DPK EAR E LA E ELD S LNQ E RK D IEQ TVL 309
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 338 A EAL ILC E KL erss ET LPGGLAMYHPE WH Q GV V GI L ASR IK E RFHR PV IA FA P - A G D G TL KGSGRSI Q G LHMR DAL ERLD 416
Cdd:TIGR00644 310 E EAL AIA E AE ---- ET NDSVIVVAKEN WH E GV L GI V ASR LA E EYNK PV LV FA I d E G K G IA KGSGRSI S G IDLY DAL SEAR 385
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 417 TL ypd L MI KFGGHAMAAGLSL EEHKFGQ F QQRFG EL VTEW L DPALLQGEVIS DG P L SAAEMSM E VAQL L RDAG P W GQ MF P 496
Cdd:TIGR00644 386 ES --- L FL KFGGHAMAAGLSL KRENLEE F REKLN EL FSKS L EKDESEPILEV DG E L PPSDIDF E LIRQ L ESLE P F GQ GN P 462
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446736130 497 EPLF DG - RF R LLQQR L V G ER HLK VMVEP vg G GPLLDG IAFN IDTTCWPD NG VREVEL A Y KL D INE FR GN RSL Q I II D DI 574
Cdd:TIGR00644 463 EPLF VL k DL R VEDIK L L G GN HLK LSLKS -- G EKNIEA IAFN AGEQLLEL NG GEPIDV A G KL K INE WN GN KTP Q L II K DI 539
RecJ
COG4199 ssDNA-specific exonuclease RecJ [Replication, recombination and repair];
70-574
8.06e-46
ssDNA-specific exonuclease RecJ [Replication, recombination and repair];
Pssm-ID: 443353 [Multi-domain]
Cd Length: 774
Bit Score: 172.57
E-value: 8.06e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 70 EG I R I IVVG D F D A D GA TS TALSV L GMRALG cdn IS Y LV PNRF ED G Y G LSPEVVDQ A K A R GA Q LI VT V DNG I SSHAGV A H A 149
Cdd:COG4199 78 AI I I I EGDD D D D G D DT TS VVSTT L LLLGAL --- LD Y YI PNRF RF G G G PGEAGPAE A A A G GA G LI II V TVI I AVNGVI A A A 154
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 150 KTL G IPV I VT DHH L P GDTL P D A E AI IN P NLRDCEF P SKS LAG V GVA FYLML AL R tflrdkgwfdergi APPN L AE LL D L V 229
Cdd:COG4199 155 EEK G LDI I ID DHH H P EHEE P L A D AI AP P PPPPPPP P FGE LAG G GVA AAVAA AL L -------------- LGLP L LL LL L L A 220
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 230 A L GTV AD V V P L DA N N R I L TWQG L SRIRAG kc RPGIKA LL EISNRDPQQLAASDL GF AL GP R LNAA G RL DDMSVG VALLL C 309
Cdd:COG4199 221 L L TAA AD L V L L LE N R R L L RRLL L LKLLST -- ERLGLL LL KAALLLASIIEEEEE GF GG GP I LNAA A RL GRAAAA VALLL L 298
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 310 DNLG E ARVL A SELD A L N QT R K EI EQGMQ AEA LILC E KL E RSSETLPGGL A M yhp EWHQ G V VG ILA S RIKERFH RP VIAFA 389
Cdd:COG4199 299 LDEE E EEEA A ELAE A Q N EE R Q EI VKIIE AEA IEEE E EA E EKDDNVVVVV A E --- GGWN G G VG VVV S VVVVKYR RP PLILL 375
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 390 -- PAGD G TLK G SGR SI QGLHMRDA L ERLDT L YP dlmi KF GG HAM AA GLS L E E h KFGQFQQRFG EL VTEW - L DPAL L QG E V 466
Cdd:COG4199 376 id DEEK G KAG G GSS SI SFFLFLLE L SLERL L LL ---- FG GG GGA AA AAL L L E - DVEDLLRLLL EL AALL e L LEED L PP E L 450
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 467 I S D GP L SAA E MSMEVAQLLRDAG P W G QMF P E P L F DGRFRLLQQ R LV G -- ER HLK VMVEPV G G gpl L DGIAFNIDTTCWPD 544
Cdd:COG4199 451 I D D LL L ISD E IIIIIIEEELLLP P G G GPP P P P K F VLLEIAINK R RI G ga NK HLK KLLTGE G E --- L LDAGGFFGGGLLEE 527
490 500 510
....*....|....*....|....*....|.
gi 446736130 545 - NGVREVELAYK L D INE FRGN R SL Q II I D DI 574
Cdd:COG4199 528 e LPDTIIVVVGG L S INE WNNR R KP Q LM I Q DI 558
DHH
pfam01368 DHH family; It is predicted that this family of proteins all perform a phosphoesterase ...
73-233
1.04e-45
DHH family; It is predicted that this family of proteins all perform a phosphoesterase function. It included the single stranded DNA exonuclease RecJ.
Pssm-ID: 460177 [Multi-domain]
Cd Length: 145
Bit Score: 157.73
E-value: 1.04e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 73 R I IVV G DF -- D A DG AT S TALSVLGMRA L GCDNIS Y LV P N R F E D GYG LS PE VVDQAKAR g AQ L IV TVD N GI S S HA G VAH AK 150
Cdd:pfam01368 1 K I VIY G HY np D G DG IG S ALGLYRYLKE L VGPDVE Y YI P D R L E E GYG IN PE AIEELIDF - DT L LI TVD C GI K S VE G IEL AK 79
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 151 T LGI P VIV T DHHLP G D T LPDA E AIINP NLRDCE fpsksl AGVG V A F Y L M lalrtflrdkg WFDERGIAPPNLA EL L DL VA 230
Cdd:pfam01368 80 E LGI D VIV I DHHLP N D F LPDA D AIINP REPPAS ------ STSE V V F K L L ----------- QYAYGEEGKEIDK EL A DL LL 142
...
gi 446736130 231 LG T 233
Cdd:pfam01368 143 LG I 145
RecJ_OB
pfam17768 RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
469-573
9.86e-28
RecJ OB domain; This OB-fold is found in RecJ proteins where is binds to ssDNA.
Pssm-ID: 465495 [Multi-domain]
Cd Length: 107
Bit Score: 107.19
E-value: 9.86e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 469 D GP L SAAEMSM E VAQL L RDAG P W GQ MF PEP L F DG R F - R L L QQ R LV G E -- R HLK VMVE pv G GG PL LD G IAFN IDTTCWPDN 545
Cdd:pfam17768 2 D AE L PLSDITL E LIEE L ERLE P F GQ GN PEP V F AL R N v R V L DV R II G K dg N HLK LTLR -- D GG RS LD A IAFN MGELLPELA 79
90 100
....*....|....*....|....*...
gi 446736130 546 GVRE V EL AY K L D INE FR G N RSLQ II I D D 573
Cdd:pfam17768 80 SGDK V DI AY T L E INE WN G R RSLQ LR I K D 107
DHHA1
pfam02272 DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called ...
322-453
1.87e-24
DHHA1 domain; This domain is often found adjacent to the DHH domain pfam01368 and is called DHHA1 for DHH associated domain. This domain is diagnostic of DHH subfamily 1 members. This domains is also found in alanyl tRNA synthetase, suggesting that this domain may have an RNA binding function. The domain is about 60 residues long and contains a conserved GG motif.
Pssm-ID: 396724 [Multi-domain]
Cd Length: 139
Bit Score: 99.05
E-value: 1.87e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446736130 322 L DA LN QTR KE I E QGMQ ---- A E AL ILCEK L ERSS E TLP G G --- L A MYHPE W HQ G VV GI L A S R I K ERFHR PVI AFAPAG DG 394
Cdd:pfam02272 1 L ES LN EEL KE L E KELE elke A L AL LKAKE L LEKA E EIN G V kvl V A EVGEG W DA G AL GI A A D R L K KKLGD PVI VLVAKE DG 80
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 446736130 395 - TL K G S G RS I -- Q G LHMRDA L ERLDT lyp D L MIKF GGH AM AAG LSLEEH K FGQFQQRFG E LV 453
Cdd:pfam02272 81 d KV K V S A RS S kd K G VDAGEL L KEVAA --- I L GGGG GGH DL AAG AGIDAE K LDEALELLE E AI 139
NrnA
COG0618 nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs [Nucleotide transport and ...
385-453
9.84e-03
nanoRNase/pAp phosphatase, hydrolyzes c-di-AMP and oligoRNAs [Nucleotide transport and metabolism, Signal transduction mechanisms];
Pssm-ID: 440383 [Multi-domain]
Cd Length: 312
Bit Score: 38.25
E-value: 9.84e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446736130 385 VIA F APAG DG TL K G S G RS IQGLHMRDALERLDT lypdlmikf GGHA M AAG LSLEEHKFGQFQQRFG E LV 453
Cdd:COG0618 253 AVV F GEVE DG EI K V S L RS KGRVDVGEIAREFGG --------- GGHA R AAG ATIPGLDLEEVVEKLL E AL 312
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
