|
Name |
Accession |
Description |
Interval |
E-value |
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
1-798 |
0e+00 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 765.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 1 MKRIDLIFNAIQE-------GNYTEGVTASELATLLQLDRANVSSDLNKLVKDKRLLKTNTRPVRF-------------- 59
Cdd:COG1221 1 MKRKEKILNYLKEltknlslEKKSEGFTAEEIAEKLGISRNNVSHELNELVKEGKLIKINGRPVLFldkeafeeqfgtkl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 60 ---YIETNTSLETHS--KEVTSLDTFAIENTSLKIAIEKAKASMLYPPNGMHTLLLGETGVGKSMFASLMHEYAIEVEQL 134
Cdd:COG1221 81 kseYSFVELLAEKENneEEEDPFDNLIGANGSLKNAIEQAKAAILYPPKGLHTLILGPTGVGKSFFAELMYEYAIEIGVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 135 PKNAPFIVFNCADYANNPQLLLGQLFGIKKGAYTGA-SDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRL 213
Cdd:COG1221 161 PEDAPFVVFNCADYANNPQLLMSQLFGYVKGAFTGAdKDKEGLIEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 214 GETENERKAQVLIITATTEEPNSFLLKTFTRRIPMTVTLPPLRERTHKERFALLQLFFTNEAIRLRKDIHVSPNAMRAFV 293
Cdd:COG1221 241 GETEKTRKANVRIIFATTEDPESSLLKTFLRRIPMVIKLPSLEERSLEERLELIKHFFKEEAKRLNKPIKVSKEVLKALL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 294 FYNCPNNIGQLKTDVQIACAKAYSDLVTKKRDSVYVSSTDLPWYMKEGLFIERKSRH----LYQIPNETFVFTGEEGWSN 369
Cdd:COG1221 321 LYDCPGNIGQLKSDIQLACAKAFLNYITNKKEEIEITLSDLPENVKKGLLKLKENREeldkLSEYLEEYLIISPDTEKKL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 370 HKTEDEKRSS--IYDYIDYKYEELQARGIEEEELELLIENDVQSFFVQYFNQISKKTSHENVFKIVDRNIVSVCEKIAEL 447
Cdd:COG1221 401 ISEEDEYELPynFYEIIEDKYEELKSEGLSEEEINKIISKDIESYFKKLIFKLDKSNISEELLLIVVDEVIVNVVEIFEE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 448 AEKHLSKTFDEKVFLALSLHVQTTLQRLQSGKQIHHPQLNQIRTKYKEAFSVAMQCIQLLEEELQITMPIDEAGFLTMFF 527
Cdd:COG1221 481 AEKKLLRYNSSNLFIALSLHLLSTLLRIKKGKKIINPQLNEIKKKYYEEFILAAEAIKIIEEELKILIPDEEEGFILLLL 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 528 VVDPIPASQTEVK--VLILAHGNGIATEMANVANELLGIEEVTGI-DMPLHESPKDFLERVKVYMKTLQNVNGLLLLVDM 604
Cdd:COG1221 561 IELKEEKSLSENVivVVVIAHGGAAASSSMAVVNLLLLEVAVAAIdDPPLEVVDVLIEEKTIVVIINKGKGGLLLLLDDG 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 605 GSLAYIGDILETEFKIPVRVLSMTSTPHALEAARKAqlgYSLDALYETVKNLTPFYLNVQEEKKKPLSPMKSVILTACLT 684
Cdd:COG1221 641 GSLFGIIIIEEEGIIIVTVVIVSTTTVLEAAARKKL---LELDLDEIIVLEELLKNPLESKKIKISTSKKKKIIVTTIAI 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 685 GEGSALAIQKMLENYLRFDKDLIEIIPISIVHEKDLTKMIENIKKERNIICIVTNFDVQVPCLTYHFQDIVNYTAIQPIQ 764
Cdd:COG1221 718 TTGEAGGILILILIIELLDKDLILIIIEILLIIIKEEILEKIIEEKKEVIIIVIISIIPLIIPPIILLLALKLIILIEIL 797
|
810 820 830
....*....|....*....|....*....|....
gi 446743698 765 ELITYEETYAKMADILEQQMQRNDGALLIKTIRY 798
Cdd:COG1221 798 VLLEILIDKEKIENIIKELLSLLNIIIVLLIIDI 831
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
83-245 |
1.65e-54 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 186.07 E-value: 1.65e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 83 ENTSLKIAIEKAKASMLYPpngMHTLLLGETGVGKSMFASLMHEYAieveqLPKNAPFIVFNCADYanNPQLLLGQLFGI 162
Cdd:pfam00158 4 ESPAMQEVLEQAKRVAPTD---APVLITGESGTGKELFARAIHQLS-----PRADGPFVAVNCAAI--PEELLESELFGH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 163 KKGAYTGA-SDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKAQVLIITATTEEPNSFLLKT 241
Cdd:pfam00158 74 EKGAFTGAdSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTK-PIKVDVRIIAATNRDLEEAVAEG 152
|
....
gi 446743698 242 FTRR 245
Cdd:pfam00158 153 RFRE 156
|
|
| PTS_IIA_man |
cd00006 |
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
539-659 |
8.15e-31 |
|
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Pssm-ID: 237978 [Multi-domain] Cd Length: 122 Bit Score: 117.32 E-value: 8.15e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 539 VKVLILAHGNgIATEMANVANELLGIEE-VTGIDMPLHESPKDFLERVKVYMKTLQNVNGLLLLVDM--GSLAYIGDILE 615
Cdd:cd00006 1 VGIIIATHGG-FASGLLNSAEMILGEQEnVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDLfgGSPNNAAARLS 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 446743698 616 TEfKIPVRVLSMTSTPHALEAARKAQLGYSLDALYETVKNLTPF 659
Cdd:cd00006 80 ME-HPPVEVIAGVNLPMLLEAARARELGLSLDELVENALEAGRE 122
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
108-321 |
1.52e-26 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 113.69 E-value: 1.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFASLMHEYAieveqLPKNAPFIVFNCADYANNpqLLLGQLFGIKKGAYTGASDQ-KGLIEKAHEGILF 186
Cdd:TIGR02915 166 LLLGESGTGKEVLARALHQLS-----DRKDKRFVAINCAAIPEN--LLESELFGYEKGAFTGAVKQtLGKIEYAHGGTLF 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 187 LDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKAQVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERTh 260
Cdd:TIGR02915 239 LDEIGDLPLNLQAKLLRFLQERVIERLGGRE-EIPVDVRIVCATNQdlkrmiAEGTFREDLFYRIAEISITIPPLRSRD- 316
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446743698 261 kERFALLQLFFTNE-AIRLRKDIH-VSPNAMRAFVFYNCPNNIGQLKTDVQIACAKAYSDLVT 321
Cdd:TIGR02915 317 -GDAVLLANAFLERfARELKRKTKgFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQIT 378
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
82-311 |
7.62e-21 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 96.46 E-value: 7.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 82 IENTSLKIAIEKAKasmlyppngmhTLLLGETGVGKSMFASlmheyAIEVEQLPKNAPFIVFNCAdyANNPQLLLGQLFG 161
Cdd:PRK11361 155 ICKDTAKIALSQAS-----------VLISGESGTGKELIAR-----AIHYNSRRAKGPFIKVNCA--ALPESLLESELFG 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 162 IKKGAYTGASDQK-GLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETENERkAQVLIITATTEE------P 234
Cdd:PRK11361 217 HEKGAFTGAQTLRqGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIK-VDIRIIAATNRDlqamvkE 295
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446743698 235 NSFLLKTFTRRIPMTVTLPPLRERthKERFALLQLFFTNE--AIRLRKDIHVSPNAMRAFVFYNCPNNIGQLKTDVQIA 311
Cdd:PRK11361 296 GTFREDLFYRLNVIHLILPPLRDR--REDISLLANHFLQKfsSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERA 372
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
106-248 |
3.39e-13 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 67.78 E-value: 3.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 106 HTLLLGETGVGKSMFASLMHEYAieveqLPKNAPFIVFNCADY-ANNPQLLLGQLFGIKKGAYTGASDQKGLIEKAHE-- 182
Cdd:smart00382 4 VILIVGPPGSGKTTLARALAREL-----GPPGGGVIYIDGEDIlEEVLDQLLLIIVGGKKASGSGELRLRLALALARKlk 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446743698 183 -GILFLDEVHRLPPEGQEMLFTFIDRgvYRRLGETENERKAQVLIITATTEEPNSFLLK-TFTRRIPM 248
Cdd:smart00382 79 pDVLILDEITSLLDAEQEALLLLLEE--LRLLLLLKSEKNLTVILTTNDEKDLGPALLRrRFDRRIVL 144
|
|
| PRD |
pfam00874 |
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory ... |
800-884 |
1.19e-10 |
|
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (pdb:1h99) and inactive state (pdb:1tlv), revealing massive structural rearrangements upon activation.
Pssm-ID: 459973 [Multi-domain] Cd Length: 90 Bit Score: 58.80 E-value: 1.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 800 LNTIQELISLQLTPDSL-MGVILHMSCMVDRLQKGESLlPHPDKEKRRQDEYWMYMKVKKALQPIENTFEIQIPDDEVFY 878
Cdd:pfam00874 4 IELIEKKLGITFDDDILyIRLILHLAFAIERIKEGITI-ENPLLEEIKEKYPKEFEIAKKILEILEEELGIELPEDEIGY 82
|
....*.
gi 446743698 879 VMDFFI 884
Cdd:pfam00874 83 IALHFL 88
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
793-879 |
5.93e-05 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 46.78 E-value: 5.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 793 IKTIRYALNTIQELISLQLTPDSLMGVILHMSCMVDRLQKGESLLPHPD--KEKRRQDEYWMymkVKKALQPIENTFEIQ 870
Cdd:COG3711 179 LELIEEIIEEAEKKLGIKLSDSIYINLTDHIAIAIKRIKKGKYIKLDNPllWEIKKPKEYEI---AKEILKLIEERLGIS 255
|
....*....
gi 446743698 871 IPDDEVFYV 879
Cdd:COG3711 256 LPEDEIGYI 264
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
1-798 |
0e+00 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 765.81 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 1 MKRIDLIFNAIQE-------GNYTEGVTASELATLLQLDRANVSSDLNKLVKDKRLLKTNTRPVRF-------------- 59
Cdd:COG1221 1 MKRKEKILNYLKEltknlslEKKSEGFTAEEIAEKLGISRNNVSHELNELVKEGKLIKINGRPVLFldkeafeeqfgtkl 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 60 ---YIETNTSLETHS--KEVTSLDTFAIENTSLKIAIEKAKASMLYPPNGMHTLLLGETGVGKSMFASLMHEYAIEVEQL 134
Cdd:COG1221 81 kseYSFVELLAEKENneEEEDPFDNLIGANGSLKNAIEQAKAAILYPPKGLHTLILGPTGVGKSFFAELMYEYAIEIGVL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 135 PKNAPFIVFNCADYANNPQLLLGQLFGIKKGAYTGA-SDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRL 213
Cdd:COG1221 161 PEDAPFVVFNCADYANNPQLLMSQLFGYVKGAFTGAdKDKEGLIEKADGGILFLDEVHRLPPEGQEMLFTFMDKGIYRRL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 214 GETENERKAQVLIITATTEEPNSFLLKTFTRRIPMTVTLPPLRERTHKERFALLQLFFTNEAIRLRKDIHVSPNAMRAFV 293
Cdd:COG1221 241 GETEKTRKANVRIIFATTEDPESSLLKTFLRRIPMVIKLPSLEERSLEERLELIKHFFKEEAKRLNKPIKVSKEVLKALL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 294 FYNCPNNIGQLKTDVQIACAKAYSDLVTKKRDSVYVSSTDLPWYMKEGLFIERKSRH----LYQIPNETFVFTGEEGWSN 369
Cdd:COG1221 321 LYDCPGNIGQLKSDIQLACAKAFLNYITNKKEEIEITLSDLPENVKKGLLKLKENREeldkLSEYLEEYLIISPDTEKKL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 370 HKTEDEKRSS--IYDYIDYKYEELQARGIEEEELELLIENDVQSFFVQYFNQISKKTSHENVFKIVDRNIVSVCEKIAEL 447
Cdd:COG1221 401 ISEEDEYELPynFYEIIEDKYEELKSEGLSEEEINKIISKDIESYFKKLIFKLDKSNISEELLLIVVDEVIVNVVEIFEE 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 448 AEKHLSKTFDEKVFLALSLHVQTTLQRLQSGKQIHHPQLNQIRTKYKEAFSVAMQCIQLLEEELQITMPIDEAGFLTMFF 527
Cdd:COG1221 481 AEKKLLRYNSSNLFIALSLHLLSTLLRIKKGKKIINPQLNEIKKKYYEEFILAAEAIKIIEEELKILIPDEEEGFILLLL 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 528 VVDPIPASQTEVK--VLILAHGNGIATEMANVANELLGIEEVTGI-DMPLHESPKDFLERVKVYMKTLQNVNGLLLLVDM 604
Cdd:COG1221 561 IELKEEKSLSENVivVVVIAHGGAAASSSMAVVNLLLLEVAVAAIdDPPLEVVDVLIEEKTIVVIINKGKGGLLLLLDDG 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 605 GSLAYIGDILETEFKIPVRVLSMTSTPHALEAARKAqlgYSLDALYETVKNLTPFYLNVQEEKKKPLSPMKSVILTACLT 684
Cdd:COG1221 641 GSLFGIIIIEEEGIIIVTVVIVSTTTVLEAAARKKL---LELDLDEIIVLEELLKNPLESKKIKISTSKKKKIIVTTIAI 717
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 685 GEGSALAIQKMLENYLRFDKDLIEIIPISIVHEKDLTKMIENIKKERNIICIVTNFDVQVPCLTYHFQDIVNYTAIQPIQ 764
Cdd:COG1221 718 TTGEAGGILILILIIELLDKDLILIIIEILLIIIKEEILEKIIEEKKEVIIIVIISIIPLIIPPIILLLALKLIILIEIL 797
|
810 820 830
....*....|....*....|....*....|....
gi 446743698 765 ELITYEETYAKMADILEQQMQRNDGALLIKTIRY 798
Cdd:COG1221 798 VLLEILIDKEKIENIIKELLSLLNIIIVLLIIDI 831
|
|
| LevR |
COG3933 |
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription]; |
1-884 |
0e+00 |
|
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription];
Pssm-ID: 443134 [Multi-domain] Cd Length: 916 Bit Score: 672.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 1 MKRIDLIFNAIQEGNYTEGVT-ASELATLLQLDRANVSSDLNKLVKDKRLLKTNTRPVRFYIETNTSLETHSKEVTSLDT 79
Cdd:COG3933 20 KARDLKELIKSKLLKESTGLLkLLALLLLLKRLSELLLELKKLKKEKKTLKKERSLLEKKKNKLNLKEEKKEKLDFKALI 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 80 FAIEntSLKIAIEKAKASMLYPPNGMHTLLLGETGVGKSMFASLMHEYAIEVEQLPKNAPFIVFNCADYANNPQLLLGQL 159
Cdd:COG3933 100 GLSL--SLLSAAAAAKAAKPPPPLGLLTLLLGGTGGGKSAFAGYMYAFAAKIAELAAPFVFFNFANAAYNPNLLLLLLFG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 160 FGIKKGAYTGAsDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETENERKAQVLIITATTEEPNSFLL 239
Cdd:COG3933 178 LGGGAGGGAGA-DGGGLGGAAGAGGGLLDLLDELPLEGEEQEELFFLLGKGLFRGEGGESRSRRVRIIRATTETEESLLL 256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 240 KTFTRRIPMTVTLPPLRERTHKERFALLQLFFTNEAIRLRKDIHVSPNAMRAFVFYNCPNNIGQLKTDVQIACAKAYSDL 319
Cdd:COG3933 257 TTLTRRIRIIIILPRLPILERRERERLLLLLFEFEEEEIRIIKILIVLLLALLLLLLYVNNLGQLGLLKLLIKAAAAAAL 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 320 ---VTKKRDSVYVSSTDLPWYMKEGLFIERKSRHLYQIPNETFVFTGEEGWSNHKTEDEKRSSIYDYIDYKYEELQARGI 396
Cdd:COG3933 337 akaIKEATIILRLLSKLLKLLLLLLLNERLLLLELKILIEPLDIFFDSSASSDESDESEEDENLYEIIEIKKKLLLELGI 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 397 EEEELELLIENDVQSFFVQYFNQISKKTSHENVFKIVDRNIVSVCEKIAELAEKHLSKTFDEKVFLALSLHVQTTLQRLQ 476
Cdd:COG3933 417 DEEEINIIIEIDIDVHLLKFIYDDNKNFNKEELAKIVDEDIINVVEEILELAEKKLGRKFSENFIYALSLHLSSFIERIK 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 477 SGKQIHHPQLNQIRTKYKEAFSVAMQCIQLLEEELQITMPIDEAGFLTMFFVVDPIPASQTEVKVLILAHGNGIATEMAN 556
Cdd:COG3933 497 EGKEIINPNLNEIKKKYPKEFKVAKEIKELIEQELDIEIPEDEVGFLTLFLVSLNENNESGKVGVIVLAHGYSTASSMAE 576
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 557 VANELLGIEEVTGIDMPLHESPKDFLERVKVYMKTLQNVNGLLLLVDMGSLAYIGDILETEFKIPVRVLSMTSTPHALEA 636
Cdd:COG3933 577 VANRLLGTNIFEAIDMPLDMSPEDILEKLKEYVKKIDTGKGVLLLVDMGSLTTFGEIIEEETGIPVKTIDMVSTPLVLEA 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 637 ARKAQLGYSLDALYETVKNLTPFylNVQEEKKKPLSPMKSVILTACLTGEGSALAIQKMLENYLRFDKDLIEIIPISIVH 716
Cdd:COG3933 657 GRKALLGMSLEEIYESLKNFNPY--EKIISKNKPEKNKKKAIITTCFTGEGTAVKIKDLLEKSLPEDEDNIEIIPLDYLE 734
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 717 EKDLTKMIENIKKERNIICIVTNFDVQVPCLTY-HFQDIVNYTAIQPIQELITYEET------------YAKMADILEQQ 783
Cdd:COG3933 735 LEEFKEKIDEIFKEYEILAIVGTIDPEIPDIPFiSLEDLISGEGIEKLQKLLGGELDaeeieeinneiiKNFSLESLIES 814
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 784 MQRNDGALLIKTIRYALNTIQELISLQLTPDSLMGVILHMSCMVDRLQKGESLLPHPDKEKRRQDEYWMYMKVKKALQPI 863
Cdd:COG3933 815 LTILNPEKIINELEDFISRLENLLGIKLDNDVKIGLILHIACMIERLVTGEEILTYPNKEEFIQENESEYAVIKEAFSPI 894
|
890 900
....*....|....*....|.
gi 446743698 864 ENTFEIQIPDDEVFYVMDFFI 884
Cdd:COG3933 895 EEKYNIKIPDSEIAYIYDILK 915
|
|
| Sigma54_activat |
pfam00158 |
Sigma-54 interaction domain; |
83-245 |
1.65e-54 |
|
Sigma-54 interaction domain;
Pssm-ID: 425491 [Multi-domain] Cd Length: 168 Bit Score: 186.07 E-value: 1.65e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 83 ENTSLKIAIEKAKASMLYPpngMHTLLLGETGVGKSMFASLMHEYAieveqLPKNAPFIVFNCADYanNPQLLLGQLFGI 162
Cdd:pfam00158 4 ESPAMQEVLEQAKRVAPTD---APVLITGESGTGKELFARAIHQLS-----PRADGPFVAVNCAAI--PEELLESELFGH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 163 KKGAYTGA-SDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKAQVLIITATTEEPNSFLLKT 241
Cdd:pfam00158 74 EKGAFTGAdSDRKGLFELADGGTLFLDEIGELPLELQAKLLRVLQEGEFERVGGTK-PIKVDVRIIAATNRDLEEAVAEG 152
|
....
gi 446743698 242 FTRR 245
Cdd:pfam00158 153 RFRE 156
|
|
| AtoC |
COG2204 |
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ... |
108-346 |
5.63e-37 |
|
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];
Pssm-ID: 441806 [Multi-domain] Cd Length: 418 Bit Score: 144.34 E-value: 5.63e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFASLMHEYAieveqLPKNAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGA-SDQKGLIEKAHEGILF 186
Cdd:COG2204 158 LITGESGTGKELVARAIHRLS-----PRADGPFVAVNCA--AIPEELLESELFGHEKGAFTGAvARRIGKFELADGGTLF 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 187 LDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKAQVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERth 260
Cdd:COG2204 231 LDEIGEMPLALQAKLLRVLQEREFERVGGNK-PIPVDVRVIAATNRdleelvEEGRFREDLYYRLNVFPIELPPLRER-- 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 261 KERFALLQLFFTNE-AIRLRKDIHVSPNAMRAFVFYNCPNNIGQLKTDVQIACAKAYSDLVTKKrdsvyvsstDLPWYMK 339
Cdd:COG2204 308 REDIPLLARHFLARfAAELGKPVKLSPEALEALLAYDWPGNVRELENVIERAVILADGEVITAE---------DLPEALE 378
|
....*..
gi 446743698 340 EglfIER 346
Cdd:COG2204 379 E---VER 382
|
|
| AcoR |
COG3284 |
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription]; |
75-321 |
1.42e-34 |
|
Transcriptional regulator DhaR of acetoin/glycerol metabolism [Transcription];
Pssm-ID: 442514 [Multi-domain] Cd Length: 625 Bit Score: 140.81 E-value: 1.42e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 75 TSLDTFAIENTSLKIAIEKAKASMlypPNGMHTLLLGETGVGKSMFASLMHEYAIeveqlPKNAPFIVFNCAdyANNPQL 154
Cdd:COG3284 318 AALAALAGGDPAMRRALRRARRLA---DRDIPVLILGETGTGKELFARAIHAASP-----RADGPFVAVNCA--AIPEEL 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 155 LLGQLFGIKKGAYTGASDQ--KGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKAQVLIITATte 232
Cdd:COG3284 388 IESELFGYEPGAFTGARRKgrPGKIEQADGGTLFLDEIGDMPLALQARLLRVLQEREVTPLGGTK-PIPVDVRLIAAT-- 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 233 epNSFLLK-----TFTR----RI-PMTVTLPPLRERTHKErfALLQLFFTNEAIRlRKDIHVSPNAMRAFVFYNCPNNIG 302
Cdd:COG3284 465 --HRDLRElvaagRFREdlyyRLnGLTLTLPPLREREDLP--ALIEHLLRELAAG-RGPLRLSPEALALLAAYPWPGNVR 539
|
250
....*....|....*....
gi 446743698 303 QLKTDVQIACAKAYSDLVT 321
Cdd:COG3284 540 ELRNVLRTALALADGGVIT 558
|
|
| PTS_IIA_man |
cd00006 |
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: ... |
539-659 |
8.15e-31 |
|
PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Pssm-ID: 237978 [Multi-domain] Cd Length: 122 Bit Score: 117.32 E-value: 8.15e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 539 VKVLILAHGNgIATEMANVANELLGIEE-VTGIDMPLHESPKDFLERVKVYMKTLQNVNGLLLLVDM--GSLAYIGDILE 615
Cdd:cd00006 1 VGIIIATHGG-FASGLLNSAEMILGEQEnVEAIDFPPGESPDDLLEKIKAALAELDSGEGVLILTDLfgGSPNNAAARLS 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 446743698 616 TEfKIPVRVLSMTSTPHALEAARKAQLGYSLDALYETVKNLTPF 659
Cdd:cd00006 80 ME-HPPVEVIAGVNLPMLLEAARARELGLSLDELVENALEAGRE 122
|
|
| RocR |
COG3829 |
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ... |
108-305 |
2.75e-30 |
|
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 443041 [Multi-domain] Cd Length: 448 Bit Score: 125.27 E-value: 2.75e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFASLMHEyaievEQLPKNAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGAS--DQKGLIEKAHEGIL 185
Cdd:COG3829 165 LILGESGTGKELFARAIHN-----ASPRRDGPFVAVNCA--AIPENLLESELFGYEKGAFTGAKkgGKPGLFELADGGTL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 186 FLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKAQVLIITAT-------TEEpnsfllKTFtRR--------IPmtV 250
Cdd:COG3829 238 FLDEIGEMPLSLQAKLLRVLQEKEVRRVGGTK-PIPVDVRIIAATnrdleemVEE------GRF-REdlyyrlnvIP--I 307
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 446743698 251 TLPPLRERthKERFALLQLFFTNE-AIRLRKDIH-VSPNAMRAFVFYNCPNNIGQLK 305
Cdd:COG3829 308 HIPPLRER--KEDIPLLAEHFLEKfNKKYGKNIKgISPEALELLLAYDWPGNVRELE 362
|
|
| PEP_resp_reg |
TIGR02915 |
PEP-CTERM-box response regulator transcription factor; Members of this protein family share ... |
108-321 |
1.52e-26 |
|
PEP-CTERM-box response regulator transcription factor; Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Pssm-ID: 274348 [Multi-domain] Cd Length: 445 Bit Score: 113.69 E-value: 1.52e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFASLMHEYAieveqLPKNAPFIVFNCADYANNpqLLLGQLFGIKKGAYTGASDQ-KGLIEKAHEGILF 186
Cdd:TIGR02915 166 LLLGESGTGKEVLARALHQLS-----DRKDKRFVAINCAAIPEN--LLESELFGYEKGAFTGAVKQtLGKIEYAHGGTLF 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 187 LDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKAQVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERTh 260
Cdd:TIGR02915 239 LDEIGDLPLNLQAKLLRFLQERVIERLGGRE-EIPVDVRIVCATNQdlkrmiAEGTFREDLFYRIAEISITIPPLRSRD- 316
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 446743698 261 kERFALLQLFFTNE-AIRLRKDIH-VSPNAMRAFVFYNCPNNIGQLKTDVQIACAKAYSDLVT 321
Cdd:TIGR02915 317 -GDAVLLANAFLERfARELKRKTKgFTDDALRALEAHAWPGNVRELENKVKRAVIMAEGNQIT 378
|
|
| TyrR |
COG3283 |
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid ... |
108-305 |
6.47e-21 |
|
Transcriptional regulator TyrR of aromatic amino acids metabolism [Transcription, Amino acid transport and metabolism];
Pssm-ID: 442513 [Multi-domain] Cd Length: 514 Bit Score: 97.57 E-value: 6.47e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFASLMHEYAIEVEQlpknaPFIVFNCA----DYANNpqlllgQLFGIKKGAYTGASD-QKGLIEKAHE 182
Cdd:COG3283 231 LIQGETGTGKELLARACHLASPRGDK-----PFLALNCAalpdDVAES------ELFGYAPGAFGNAREgKKGLFEQANG 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 183 GILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGEtENERKAQVLIITATTEEpnsfLLKT----------FTRRIPMTVTL 252
Cdd:COG3283 300 GTVFLDEIGEMSPQLQAKLLRFLQDGTFRRVGE-EQEVKVDVRVICATQKD----LAELvqegefredlYYRLNVLTLTL 374
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 446743698 253 PPLRERthKERFALL-QLFFTNEAIRL-RKDIHVSPNAMRAFVFYNCPNNIGQLK 305
Cdd:COG3283 375 PPLRER--KSDILPLaEHFVARFSQQLgRPRPRLSPDLVDFLQSYPWPGNVRQLE 427
|
|
| PRK11361 |
PRK11361 |
acetoacetate metabolism transcriptional regulator AtoC; |
82-311 |
7.62e-21 |
|
acetoacetate metabolism transcriptional regulator AtoC;
Pssm-ID: 183099 [Multi-domain] Cd Length: 457 Bit Score: 96.46 E-value: 7.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 82 IENTSLKIAIEKAKasmlyppngmhTLLLGETGVGKSMFASlmheyAIEVEQLPKNAPFIVFNCAdyANNPQLLLGQLFG 161
Cdd:PRK11361 155 ICKDTAKIALSQAS-----------VLISGESGTGKELIAR-----AIHYNSRRAKGPFIKVNCA--ALPESLLESELFG 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 162 IKKGAYTGASDQK-GLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETENERkAQVLIITATTEE------P 234
Cdd:PRK11361 217 HEKGAFTGAQTLRqGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIK-VDIRIIAATNRDlqamvkE 295
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 446743698 235 NSFLLKTFTRRIPMTVTLPPLRERthKERFALLQLFFTNE--AIRLRKDIHVSPNAMRAFVFYNCPNNIGQLKTDVQIA 311
Cdd:PRK11361 296 GTFREDLFYRLNVIHLILPPLRDR--REDISLLANHFLQKfsSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERA 372
|
|
| PRK10365 |
PRK10365 |
sigma-54-dependent response regulator transcription factor ZraR; |
99-335 |
8.54e-21 |
|
sigma-54-dependent response regulator transcription factor ZraR;
Pssm-ID: 182412 [Multi-domain] Cd Length: 441 Bit Score: 96.25 E-value: 8.54e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 99 LYPPNGMHTLLLGETGVGKSMFASLMHEYAIEVEQlpknaPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGASDQK-GLI 177
Cdd:PRK10365 157 LVAPSEATVLIHGDSGTGKELVARAIHASSARSEK-----PLVTLNCA--ALNESLLESELFGHEKGAFTGADKRReGRF 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 178 EKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETENeRKAQVLIITAT----TEEPNS--FLLKTFTRRIPMTVT 251
Cdd:PRK10365 230 VEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQT-ISVDVRLIAAThrdlAAEVNAgrFRQDLYYRLNVVAIE 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 252 LPPLRERthKERFALL-QLFFTNEAIRLRKDIH-VSPNAMRAFVFYNCPNNIGQLKTDVQIACAKAYSDLVTKKRDSVYV 329
Cdd:PRK10365 309 VPSLRQR--REDIPLLaGHFLQRFAERNRKAVKgFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAI 386
|
....*.
gi 446743698 330 SSTDLP 335
Cdd:PRK10365 387 ASTPIP 392
|
|
| PRK10820 |
PRK10820 |
transcriptional regulator TyrR; |
91-305 |
1.96e-20 |
|
transcriptional regulator TyrR;
Pssm-ID: 236769 [Multi-domain] Cd Length: 520 Bit Score: 95.91 E-value: 1.96e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 91 IEKA-KASMLYPPngmhTLLLGETGVGKSMFASLMHEYAIEVEQlpknaPFIVFNCADYANNpqLLLGQLFGIKKGAYTG 169
Cdd:PRK10820 217 VEQArKLAMLDAP----LLITGDTGTGKDLLAYACHLRSPRGKK-----PFLALNCASIPDD--VVESELFGHAPGAYPN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 170 ASD-QKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGEtENERKAQVLIITATTE------EPNSFLLKTF 242
Cdd:PRK10820 286 ALEgKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGE-DHEVHVDVRVICATQKnlvelvQKGEFREDLY 364
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 446743698 243 TRRIPMTVTLPPLRERThKERFALLQLF---FTNEAIRLRKDIhvSPNaMRAFVF-YNCPNNIGQLK 305
Cdd:PRK10820 365 YRLNVLTLNLPPLRDRP-QDIMPLTELFvarFADEQGVPRPKL--AAD-LNTVLTrYGWPGNVRQLK 427
|
|
| PRK15424 |
PRK15424 |
propionate catabolism operon regulatory protein PrpR; Provisional |
90-305 |
4.78e-19 |
|
propionate catabolism operon regulatory protein PrpR; Provisional
Pssm-ID: 237963 [Multi-domain] Cd Length: 538 Bit Score: 91.70 E-value: 4.78e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 90 AIEKAKAS-MLYPPNGMHTLLLGETGVGKSMFASLMH-EYAIEVEQLP--KNAPFIVFNCAdyANNPQLLLGQLFGIKKG 165
Cdd:PRK15424 227 QMEQVRQTiLLYARSSAAVLIQGETGTGKELAAQAIHrEYFARHDARQgkKSHPFVAVNCG--AIAESLLEAELFGYEEG 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 166 AYTGA--SDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKAQVLIITATTE------EPNSF 237
Cdd:PRK15424 305 AFTGSrrGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQ-PVPVDVRVISATHCdleedvRQGRF 383
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 446743698 238 LLKTFTRRIPMTVTLPPLRERTHKerFALLQLFFTNEAIRLRkDIHVSPNAMR-------AFVFYNCPNNIGQLK 305
Cdd:PRK15424 384 RRDLFYRLSILRLQLPPLRERVAD--ILPLAESFLKQSLAAL-SAPFSAALRQglqqcetLLLHYDWPGNVRELR 455
|
|
| pspF |
PRK11608 |
phage shock protein operon transcriptional activator; Provisional |
108-309 |
2.46e-18 |
|
phage shock protein operon transcriptional activator; Provisional
Pssm-ID: 236936 [Multi-domain] Cd Length: 326 Bit Score: 87.03 E-value: 2.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFASLMHeYAIEVEQlpknAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGAsdQK---GLIEKAHEGI 184
Cdd:PRK11608 33 LIIGERGTGKELIASRLH-YLSSRWQ----GPFISLNCA--ALNENLLDSELFGHEAGAFTGA--QKrhpGRFERADGGT 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 185 LFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKAQVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRER 258
Cdd:PRK11608 104 LFLDELATAPMLVQEKLLRVIEYGELERVGGSQ-PLQVNVRLVCATNAdlpamvAEGKFRADLLDRLAFDVVQLPPLRER 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 446743698 259 thKERFALLQLFFtneAIRLRKDIHV------SPNAMRAFVFYNCPNNIGQLKTDVQ 309
Cdd:PRK11608 183 --QSDIMLMAEHF---AIQMCRELGLplfpgfTERARETLLNYRWPGNIRELKNVVE 234
|
|
| PRD |
pfam00874 |
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory ... |
442-528 |
3.57e-18 |
|
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (pdb:1h99) and inactive state (pdb:1tlv), revealing massive structural rearrangements upon activation.
Pssm-ID: 459973 [Multi-domain] Cd Length: 90 Bit Score: 79.99 E-value: 3.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 442 EKIAELAEKHLSKTF-DEKVFLALSLHVQTTLQRLQSGKQIHHPQLNQIRTKYKEAFSVAMQCIQLLEEELQITMPIDEA 520
Cdd:pfam00874 1 EEIIELIEKKLGITFdDDILYIRLILHLAFAIERIKEGITIENPLLEEIKEKYPKEFEIAKKILEILEEELGIELPEDEI 80
|
....*...
gi 446743698 521 GFLTMFFV 528
Cdd:pfam00874 81 GYIALHFL 88
|
|
| PRK05022 |
PRK05022 |
nitric oxide reductase transcriptional regulator NorR; |
108-304 |
1.45e-16 |
|
nitric oxide reductase transcriptional regulator NorR;
Pssm-ID: 235331 [Multi-domain] Cd Length: 509 Bit Score: 83.68 E-value: 1.45e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFASLMHeyaievEQLP-KNAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGA-SDQKGLIEKAHEGIL 185
Cdd:PRK05022 214 LILGETGVGKELVARAIH------AASPrADKPLVYLNCA--ALPESLAESELFGHVKGAFTGAiSNRSGKFELADGGTL 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 186 FLDEVHRLPPEGQEMLFTFIDRGVYRRLGEtENERKAQVLIITATteepNSFL----------------LKTFtrriPMT 249
Cdd:PRK05022 286 FLDEIGELPLALQAKLLRVLQYGEIQRVGS-DRSLRVDVRVIAAT----NRDLreevragrfradlyhrLSVF----PLS 356
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 446743698 250 VtlPPLRERthKERFALLQLFFTnEAIRLR---KDIHVSPNAMRAFVFYNCPNNIGQL 304
Cdd:PRK05022 357 V--PPLRER--GDDVLLLAGYFL-EQNRARlglRSLRLSPAAQAALLAYDWPGNVREL 409
|
|
| glnG |
PRK10923 |
nitrogen regulation protein NR(I); Provisional |
108-305 |
5.10e-16 |
|
nitrogen regulation protein NR(I); Provisional
Pssm-ID: 182842 [Multi-domain] Cd Length: 469 Bit Score: 81.84 E-value: 5.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFASLMHEYAieveqlPK-NAPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGASD-QKGLIEKAHEGIL 185
Cdd:PRK10923 165 LINGESGTGKELVAHALHRHS------PRaKAPFIALNMA--AIPKDLIESELFGHEKGAFTGANTiRQGRFEQADGGTL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 186 FLDEVHRLPPEGQEMLFTFIDRGVYRRLGETEnERKAQVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERT 259
Cdd:PRK10923 237 FLDEIGDMPLDVQTRLLRVLADGQFYRVGGYA-PVKVDVRIIAATHQnleqrvQEGKFREDLFHRLNVIRVHLPPLRERR 315
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 446743698 260 hkERFALLQLFFTNEAIR----LRKDIHvsPNAMRAFVFYNCPNNIGQLK 305
Cdd:PRK10923 316 --EDIPRLARHFLQVAARelgvEAKLLH--PETEAALTRLAWPGNVRQLE 361
|
|
| PRK15115 |
PRK15115 |
response regulator GlrR; Provisional |
108-304 |
1.11e-15 |
|
response regulator GlrR; Provisional
Pssm-ID: 185070 [Multi-domain] Cd Length: 444 Bit Score: 80.65 E-value: 1.11e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFASLMHEYAIEVEQlpknaPFIVFNCAdyANNPQLLLGQLFGIKKGAYTGA-SDQKGLIEKAHEGILF 186
Cdd:PRK15115 161 LINGQSGTGKEILAQAIHNASPRASK-----PFIAINCG--ALPEQLLESELFGHARGAFTGAvSNREGLFQAAEGGTLF 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 187 LDEVHRLPPEGQEMLFTFIDRGVYRRLGETeNERKAQVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERTh 260
Cdd:PRK15115 234 LDEIGDMPAPLQVKLLRVLQERKVRPLGSN-RDIDIDVRIISATHRdlpkamARGEFREDLYYRLNVVSLKIPALAERT- 311
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 446743698 261 kERFALLQLFFTNEAIRLRKDI--HVSPNAMRAFVFYNCPNNIGQL 304
Cdd:PRK15115 312 -EDIPLLANHLLRQAAERHKPFvrAFSTDAMKRLMTASWPGNVRQL 356
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
90-254 |
1.98e-15 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 74.49 E-value: 1.98e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 90 AIEKAKASMLYPPNGmHTLLLGETGVGKSMFASLMHEYAIEveqlpKNAPFIVFNCADyannpqlLLGQLFGIKKGAYTG 169
Cdd:cd00009 6 AIEALREALELPPPK-NLLLYGPPGTGKTTLARAIANELFR-----PGAPFLYLNASD-------LLEGLVVAELFGHFL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 170 ASDQKGLIEKAHEGILFLDEVHRLPPEGQEMLFTFIDRGVYRRlgetenERKAQVLIITATTEEPNSFLLKTFTRRIPMT 249
Cdd:cd00009 73 VRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR------IDRENVRVIGATNRPLLGDLDRALYDRLDIR 146
|
....*
gi 446743698 250 VTLPP 254
Cdd:cd00009 147 IVIPL 151
|
|
| PRK11388 |
PRK11388 |
DNA-binding transcriptional regulator DhaR; Provisional |
108-305 |
5.60e-15 |
|
DNA-binding transcriptional regulator DhaR; Provisional
Pssm-ID: 183114 [Multi-domain] Cd Length: 638 Bit Score: 78.95 E-value: 5.60e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFASLMHEyaiEVEQlpKNAPFIVFNCADYANNpqLLLGQLFGikKGAYTGASDQKGLIEKAHEGILFL 187
Cdd:PRK11388 352 LLCGEEGVGKALLAQAIHN---ESER--AAGPYIAVNCQLYPDE--ALAEEFLG--SDRTDSENGRLSKFELAHGGTLFL 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 188 DEVHRLPPEGQEMLFTFIDRGVYRRLgeteNERK---AQVLIITATTEE-PNSFLLKTFTRRIPMT-----VTLPPLRER 258
Cdd:PRK11388 423 EKVEYLSPELQSALLQVLKTGVITRL----DSRRlipVDVRVIATTTADlAMLVEQNRFSRQLYYAlhafeITIPPLRMR 498
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 446743698 259 THKERFALLQLFFTNEAiRLRKDIHVSPNAMRAFVFYNCPNNIGQLK 305
Cdd:PRK11388 499 REDIPALVNNKLRSLEK-RFSTRLKIDDDALARLVSYRWPGNDFELR 544
|
|
| PRK15429 |
PRK15429 |
formate hydrogenlyase transcriptional activator FlhA; |
108-311 |
1.72e-14 |
|
formate hydrogenlyase transcriptional activator FlhA;
Pssm-ID: 237965 [Multi-domain] Cd Length: 686 Bit Score: 77.56 E-value: 1.72e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFASLMHEYAieveqlPKNAPFIV-FNCAdyANNPQLLLGQLFGIKKGAYTGASDQK-GLIEKAHEGIL 185
Cdd:PRK15429 403 LILGETGTGKELIARAIHNLS------GRNNRRMVkMNCA--AMPAGLLESDLFGHERGAFTGASAQRiGRFELADKSSL 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 186 FLDEVHRLPPEGQEMLFTFIDRGVYRRLGeTENERKAQVLIITATTEE------PNSFLLKTFTRRIPMTVTLPPLRERt 259
Cdd:PRK15429 475 FLDEVGDMPLELQPKLLRVLQEQEFERLG-SNKIIQTDVRLIAATNRDlkkmvaDREFRSDLYYRLNVFPIHLPPLRER- 552
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 446743698 260 hKERFALLQLFFTNE-AIRLRKDIHVSP-NAMRAFVFYNCPNNIGQLKTDVQIA 311
Cdd:PRK15429 553 -PEDIPLLVKAFTFKiARRMGRNIDSIPaETLRTLSNMEWPGNVRELENVIERA 605
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
407-571 |
6.47e-14 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 75.67 E-value: 6.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 407 NDVQSFFVQYFNQISKKTSHENVF--KIVDRNIVSVCEKIAELAEKHLSKTFDEKVFLALSLHVQTTLQRLQSGKQIHHP 484
Cdd:COG3711 146 LDIRKALAELLSELLSENDLLSLLllKLIPEEDLELIEEIIEEAEKKLGIKLSDSIYINLTDHIAIAIKRIKKGKYIKLD 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 485 QLNQIRTKYKEAFSVAMQCIQLLEEELQITMPIDEAGFLTMFFVvdpipASQTEVKVLIlahGNGIATEMANVANELLG- 563
Cdd:COG3711 226 NPLLWEIKKPKEYEIAKEILKLIEERLGISLPEDEIGYIALHLL-----GARLNNDNEL---SEIITLEITKLIKEIINi 297
|
....*...
gi 446743698 564 IEEVTGID 571
Cdd:COG3711 298 IEEELGID 305
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
421-527 |
2.88e-13 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 73.74 E-value: 2.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 421 SKKTSHENVFKIVDRNIVSVCEKIAELAEKHLSKTFDEKVFLA--LSLHVQTTLQRLQSGKQIHHPQLNQIRTKYKEAFS 498
Cdd:COG3711 271 ARLNNDNELSEIITLEITKLIKEIINIIEEELGIDLDEDSLLYerLITHLKPAINRLKYGIPIRNPLLEEIKEKYPEAFE 350
|
90 100
....*....|....*....|....*....
gi 446743698 499 VAMQCIQLLEEELQITMPIDEAGFLTMFF 527
Cdd:COG3711 351 LAKKIAKYLEKELGIEIPEDEIGYLTLHF 379
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
106-248 |
3.39e-13 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 67.78 E-value: 3.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 106 HTLLLGETGVGKSMFASLMHEYAieveqLPKNAPFIVFNCADY-ANNPQLLLGQLFGIKKGAYTGASDQKGLIEKAHE-- 182
Cdd:smart00382 4 VILIVGPPGSGKTTLARALAREL-----GPPGGGVIYIDGEDIlEEVLDQLLLIIVGGKKASGSGELRLRLALALARKlk 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 446743698 183 -GILFLDEVHRLPPEGQEMLFTFIDRgvYRRLGETENERKAQVLIITATTEEPNSFLLK-TFTRRIPM 248
Cdd:smart00382 79 pDVLILDEITSLLDAEQEALLLLLEE--LRLLLLLKSEKNLTVILTTNDEKDLGPALLRrRFDRRIVL 144
|
|
| PRD |
pfam00874 |
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory ... |
800-884 |
1.19e-10 |
|
PRD domain; The PRD domain (for PTS Regulation Domain), is the phosphorylatable regulatory domain found in bacterial transcriptional antiterminator such as BglG, SacY and LicT, as well as in activators such as MtlR and LevR. The PRD is phosphorylated on one or two conserved histidine residues. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria and are often characterized by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators pfam03123) or DNA (for activators), and a duplicated PRD module which is phosphorylated by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations modify the conformation and stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain. The structure of the LicT PRD domains has been solved in both the active (pdb:1h99) and inactive state (pdb:1tlv), revealing massive structural rearrangements upon activation.
Pssm-ID: 459973 [Multi-domain] Cd Length: 90 Bit Score: 58.80 E-value: 1.19e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 800 LNTIQELISLQLTPDSL-MGVILHMSCMVDRLQKGESLlPHPDKEKRRQDEYWMYMKVKKALQPIENTFEIQIPDDEVFY 878
Cdd:pfam00874 4 IELIEKKLGITFDDDILyIRLILHLAFAIERIKEGITI-ENPLLEEIKEKYPKEFEIAKKILEILEEELGIELPEDEIGY 82
|
....*.
gi 446743698 879 VMDFFI 884
Cdd:pfam00874 83 IALHFL 88
|
|
| FhlA |
COG3604 |
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ... |
109-305 |
6.78e-10 |
|
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];
Pssm-ID: 442823 [Multi-domain] Cd Length: 338 Bit Score: 61.79 E-value: 6.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 109 LLGETGVGKSMFASLMHEYAIEveqlpKNAPFIVFNCADYannPQLLLGQLfgikkgaytgasdqkgliekahegilfld 188
Cdd:COG3604 120 ILGETGTGKELVANAIHELSPR-----ADKPFVKVNCAAL---PESLLESL----------------------------- 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 189 evhrlppegQEmlftfidrGVYRRLGETEnERKAQVLIITATTE------EPNSFLLKTFTRRIPMTVTLPPLRERthKE 262
Cdd:COG3604 163 ---------QE--------GEFERVGGDE-TIKVDVRIIAATNRdleeevAEGRFREDLYYRLNVFPIRLPPLRER--RE 222
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 446743698 263 RFALLQLFFTNE-AIRLRKDI-HVSPNAMRAFVFYNCPNNIGQLK 305
Cdd:COG3604 223 DIPLLAEHFLEKfSRRLGKPIlRLSPEALEALMAYPWPGNVRELE 267
|
|
| LevR |
COG3933 |
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription]; |
689-891 |
2.42e-08 |
|
Transcriptional regulatory protein LevR, contains PRD, AAA+ and EIIA domains [Transcription];
Pssm-ID: 443134 [Multi-domain] Cd Length: 916 Bit Score: 57.82 E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 689 ALAIQKMLENYLRFDKDLIEIIPISIVHEKDLTKMIENIKKERNIICIVTNFDVQVP-----CLTYHFQDIVNYTA---- 759
Cdd:COG3933 333 AAALAKAIKEATIILRLLSKLLKLLLLLLLNERLLLLELKILIEPLDIFFDSSASSDesdesEEDENLYEIIEIKKklll 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 760 -------IQPIQELITYEETYAKMADILEQQMQRND-----GALLIKTIRYALNTIQELISLQLTPDSLMGVILHMSCMV 827
Cdd:COG3933 413 elgideeEINIIIEIDIDVHLLKFIYDDNKNFNKEElakivDEDIINVVEEILELAEKKLGRKFSENFIYALSLHLSSFI 492
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446743698 828 DRLQKGESLLPHPDKEKRRQ--DEYWMYMKVKKAlqpIENTFEIQIPDDEVFYVMDFFIKNQPAKN 891
Cdd:COG3933 493 ERIKEGKEIINPNLNEIKKKypKEFKVAKEIKEL---IEQELDIEIPEDEVGFLTLFLVSLNENNE 555
|
|
| PRK09772 |
PRK09772 |
transcriptional antiterminator BglG; Provisional |
437-539 |
1.96e-07 |
|
transcriptional antiterminator BglG; Provisional
Pssm-ID: 170086 [Multi-domain] Cd Length: 278 Bit Score: 53.56 E-value: 1.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 437 IVSVCEKIAELAEKHLSKtFDEKVFLALSLHVQTTLQRLQSGKQIHHPQLNQIRTKYKEAFSVAMQCIQLLEEELQITMP 516
Cdd:PRK09772 72 VMATCDRIISLAQERLGK-LQDSIYISLTDHCQFAIKRFQQNVLLPNPLLWDIQRLYPKEFQLGEEALTIIDKRLGVQLP 150
|
90 100
....*....|....*....|...
gi 446743698 517 IDEAGFLTMFFVVDPIPASQTEV 539
Cdd:PRK09772 151 KDEVGFIAMHLVSAQMSGNMEDV 173
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
106-245 |
3.20e-06 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 47.29 E-value: 3.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 106 HTLLLGETGVGKSMFASLMhEYAIEveqlpkNAPFIVFNCADYANNPQLLLGQLFGIKKGAYTGASdqkgLIEKAHEG-I 184
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERL-AAALS------NRPVFYVQLTRDTTEEDLFGRRNIDPGGASWVDGP----LVRAAREGeI 69
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446743698 185 LFLDEVHRLPPEGQEMLFTFIDRGVYRR--LGETENERKAQVLIItATTEEPN---SFLLKTFTRR 245
Cdd:pfam07728 70 AVLDEINRANPDVLNSLLSLLDERRLLLpdGGELVKAAPDGFRLI-ATMNPLDrglNELSPALRSR 134
|
|
| EIIA-man |
pfam03610 |
PTS system fructose IIA component; |
540-652 |
4.65e-05 |
|
PTS system fructose IIA component;
Pssm-ID: 427399 [Multi-domain] Cd Length: 113 Bit Score: 43.39 E-value: 4.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 540 KVLILAHGNgIATEMANVANELLG-IEEVTGIDMPLHESPKDFLERVKVYMKTLQNVNGLLLLVDMGSLAYIGD-ILETE 617
Cdd:pfam03610 1 GIVIVSHGE-LAEGLLELAEMMAGeQENVIAVGGTPGESIGTSFEKIVEAIENLDSGDGVLVLVDLGGATPNNEaALELL 79
|
90 100 110
....*....|....*....|....*....|....*
gi 446743698 618 FKIPVRVLSMTSTPHALEAARKAQlGYSLDALYET 652
Cdd:pfam03610 80 EKERMEVITGVNLPMVEGAYAARV-SASLGELVEA 113
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
793-879 |
5.93e-05 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 46.78 E-value: 5.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 793 IKTIRYALNTIQELISLQLTPDSLMGVILHMSCMVDRLQKGESLLPHPD--KEKRRQDEYWMymkVKKALQPIENTFEIQ 870
Cdd:COG3711 179 LELIEEIIEEAEKKLGIKLSDSIYINLTDHIAIAIKRIKKGKYIKLDNPllWEIKKPKEYEI---AKEILKLIEERLGIS 255
|
....*....
gi 446743698 871 IPDDEVFYV 879
Cdd:COG3711 256 LPEDEIGYI 264
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
87-271 |
9.84e-05 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 45.67 E-value: 9.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 87 LKIAIEKAKASMLYPPNGMhtLLLGETGVGKSMFASLMheyAIEVeqlpkNAPFIVFNCADyannpqlLLGQlfgikkga 166
Cdd:COG0464 176 PLKRPELREEYGLPPPRGL--LLYGPPGTGKTLLARAL---AGEL-----GLPLIEVDLSD-------LVSK-------- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 167 YTGASDQK--GLIEKAHE---GILFLDEVHRLPPEGQEMLFTFIDRGVYRRLGETENERKaQVLIITATteepNSFLL-- 239
Cdd:COG0464 231 YVGETEKNlrEVFDKARGlapCVLFIDEADALAGKRGEVGDGVGRRVVNTLLTEMEELRS-DVVVIAAT----NRPDLld 305
|
170 180 190
....*....|....*....|....*....|..
gi 446743698 240 KTFTRRIPMTVTLPPLrerTHKERFALLQLFF 271
Cdd:COG0464 306 PALLRRFDEIIFFPLP---DAEERLEIFRIHL 334
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
108-246 |
2.04e-04 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 42.20 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFA-SLMHEYaieveqlpkNAPFIVFNCADyannpqlLLGQLFGIkkgaytGASDQKGLIEKAHE---G 183
Cdd:pfam00004 2 LLYGPPGTGKTTLAkAVAKEL---------GAPFIEISGSE-------LVSKYVGE------SEKRLRELFEAAKKlapC 59
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 446743698 184 ILFLDEVHRLPP-----------EGQEMLFTFIDrgvyrrlGETENERKaqVLIITATT--EEPNSFLLKTFTRRI 246
Cdd:pfam00004 60 VIFIDEIDALAGsrgsggdsesrRVVNQLLTELD-------GFTSSNSK--VIVIAATNrpDKLDPALLGRFDRII 126
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
83-293 |
2.24e-04 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 44.69 E-value: 2.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 83 ENTSLKIAIEKAK-ASMLyppngmhtlLLGETGVGKSMFASLMHEYAieveqlpkNAPFIVFNCAdyannpqlllgqLFG 161
Cdd:PRK13342 23 PGKPLRRMIEAGRlSSMI---------LWGPPGTGKTTLARIIAGAT--------DAPFEALSAV------------TSG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 162 IKkgaytgasDQKGLIEKAHEG-------ILFLDEVHRLPPEGQEMLFTFIDRGvyrrlgetenerkaQVLIITATTEEP 234
Cdd:PRK13342 74 VK--------DLREVIEEARQRrsagrrtILFIDEIHRFNKAQQDALLPHVEDG--------------TITLIGATTENP 131
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 235 nSFllktftrripmTVTlPPLRERTHkerfaLLQLF-FTNEAIRL----------RKDIHVSPNAMRAFV 293
Cdd:PRK13342 132 -SF-----------EVN-PALLSRAQ-----VFELKpLSEEDIEQllkraledkeRGLVELDDEALDALA 183
|
|
| BglG |
COG3711 |
Transcriptional antiterminator [Transcription]; |
781-878 |
7.65e-04 |
|
Transcriptional antiterminator [Transcription];
Pssm-ID: 442925 [Multi-domain] Cd Length: 618 Bit Score: 43.31 E-value: 7.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 781 EQQMQRNDGALLIKTIRYALNTIQELISLQLTPDS--LMGVILHMSCMVDRLQKGESLlPHP--DKEKRRQDEywMYMKV 856
Cdd:COG3711 276 DNELSEIITLEITKLIKEIINIIEEELGIDLDEDSllYERLITHLKPAINRLKYGIPI-RNPllEEIKEKYPE--AFELA 352
|
90 100
....*....|....*....|..
gi 446743698 857 KKALQPIENTFEIQIPDDEVFY 878
Cdd:COG3711 353 KKIAKYLEKELGIEIPEDEIGY 374
|
|
| Sigma54_activ_2 |
pfam14532 |
Sigma-54 interaction domain; |
85-255 |
7.70e-04 |
|
Sigma-54 interaction domain;
Pssm-ID: 434021 [Multi-domain] Cd Length: 138 Bit Score: 40.40 E-value: 7.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 85 TSLKIAIEKAKASMLypPngmhTLLLGETGVGKSMFASLMHEYAIEVEQLpknapfivFNCADYANNPQLLLgqlfgikk 164
Cdd:pfam14532 8 QEIKRRLEQAAQSTL--P----VFLTGEPGSGKEFCARYLHNPSTPWVQP--------FDIEYLAHAPLELL-------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 165 gaytgasdqkgliEKAHEGILFLDEVHRLPPEGQemlftfidRGVYRRLGETENERkaqVLIITATTE------EPNSFL 238
Cdd:pfam14532 66 -------------EQAKGGTLYLKDIADLSKALQ--------KGLLLLLAKAEGYR---VRLVCTSSKdlpqlaAAGLFD 121
|
170
....*....|....*..
gi 446743698 239 LKTFTRRIPMTVTLPPL 255
Cdd:pfam14532 122 EQLYFELSALRLHVPPL 138
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
106-196 |
1.36e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 39.63 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 106 HTLLLGETGVGKSMFASLMHeyaievEQLPK-NAPFIVFNCADYANNPQLL--LGQLFGIKKGAYTGASD-----QKGLI 177
Cdd:pfam13401 7 ILVLTGESGTGKTTLLRRLL------EQLPEvRDSVVFVDLPSGTSPKDLLraLLRALGLPLSGRLSKEEllaalQQLLL 80
|
90
....*....|....*....
gi 446743698 178 EKAHEGILFLDEVHRLPPE 196
Cdd:pfam13401 81 ALAVAVVLIIDEAQHLSLE 99
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
108-234 |
4.44e-03 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 40.81 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446743698 108 LLLGETGVGKSMFASLMHEYAieveqlpkNAPFIVFNCAdyannpqlllgqLFGIKkgaytgasDQKGLIEKAHE----- 182
Cdd:PRK13341 56 ILYGPPGVGKTTLARIIANHT--------RAHFSSLNAV------------LAGVK--------DLRAEVDRAKErlerh 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 446743698 183 ---GILFLDEVHRLPPEGQEMLFTFIDRGVyrrlgetenerkaqVLIITATTEEP 234
Cdd:PRK13341 108 gkrTILFIDEVHRFNKAQQDALLPWVENGT--------------ITLIGATTENP 148
|
|
| |
