NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|446747435|ref|WP_000824691|]
View 

MULTISPECIES: DM13 domain-containing protein [Bacillus]

Protein Classification

DM13 domain-containing protein( domain architecture ID 10565061)

DM13 domain-containing protein, may be an electron transfer protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DM13 pfam10517
Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system ...
 60-163 8.62e-32

Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme.


:

Pssm-ID: 463130  Cd Length: 105  Bit Score: 109.64  E-value: 8.62e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446747435   60 QFQNGVHETTGTATIYQladgKRVLRLSNFST-SNGPDVRVVLVPTDRLKNNED--VKNHQYIELGKLKGNKGDQNYEI- 135
Cdd:pfam10517   1 EFVSGEHGTSGTVYIVD----DRTLELEGFATdGPGPDLYVWLGDSPVPSGKDGfkVPDEDGVTLGPLKGYSGEQRYTLt 76

                          90       100
                  ....*....|....*....|....*....
gi 446747435  136 -PEGIDVSTYGSVSVWCKRFNENFGVAYF 163
Cdd:pfam10517  77 lPAGVDLADYKSVSIWCERFNVNFGAAPL 105
 
Name Accession Description Interval E-value
DM13 pfam10517
Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system ...
 60-163 8.62e-32

Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme.


Pssm-ID: 463130  Cd Length: 105  Bit Score: 109.64  E-value: 8.62e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446747435   60 QFQNGVHETTGTATIYQladgKRVLRLSNFST-SNGPDVRVVLVPTDRLKNNED--VKNHQYIELGKLKGNKGDQNYEI- 135
Cdd:pfam10517   1 EFVSGEHGTSGTVYIVD----DRTLELEGFATdGPGPDLYVWLGDSPVPSGKDGfkVPDEDGVTLGPLKGYSGEQRYTLt 76

                          90       100
                  ....*....|....*....|....*....
gi 446747435  136 -PEGIDVSTYGSVSVWCKRFNENFGVAYF 163
Cdd:pfam10517  77 lPAGVDLADYKSVSIWCERFNVNFGAAPL 105
DM13 smart00686
Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis ...
 82-163 7.84e-04

Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9;


Pssm-ID: 128929  Cd Length: 108  Bit Score: 37.34  E-value: 7.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446747435    82 RVLRLSNFS-TSNGPDVRVVLVPTDRLkNNEDVKNHQYiELGKLKGNKGDQNYEI----PEGIDVSTYGSVSVWCKRFNE 156
Cdd:smart00686  17 KTLRIPNFSyDGSGPDAYFWVGAGSRP-DNEGGKKVPD-EYGYCNPLRRYHNEDIvlrlPESLTIDDIKWFSVWCLKTAH 94


                   ....*..
gi 446747435   157 NFGVAYF 163
Cdd:smart00686  95 NFGHVLF 101
 
Name Accession Description Interval E-value
DM13 pfam10517
Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system ...
 60-163 8.62e-32

Electron transfer DM13; The DM13 domain is a component of a novel electron-transfer system potentially involved in oxidative modification of animal cell-surface proteins. It contains a nearly absolutely conserved cysteine, which could be involved in a redox reaction, either as a naked thiol group or through binding a prosthetic group like heme.


Pssm-ID: 463130  Cd Length: 105  Bit Score: 109.64  E-value: 8.62e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446747435   60 QFQNGVHETTGTATIYQladgKRVLRLSNFST-SNGPDVRVVLVPTDRLKNNED--VKNHQYIELGKLKGNKGDQNYEI- 135
Cdd:pfam10517   1 EFVSGEHGTSGTVYIVD----DRTLELEGFATdGPGPDLYVWLGDSPVPSGKDGfkVPDEDGVTLGPLKGYSGEQRYTLt 76

                          90       100
                  ....*....|....*....|....*....
gi 446747435  136 -PEGIDVSTYGSVSVWCKRFNENFGVAYF 163
Cdd:pfam10517  77 lPAGVDLADYKSVSIWCERFNVNFGAAPL 105
DM13 smart00686
Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis ...
 82-163 7.84e-04

Domain present in fly proteins (CG14681, CG12492, CG6217), worm H06A10.1 and Arabidopsis thaliana MBG8.9;


Pssm-ID: 128929  Cd Length: 108  Bit Score: 37.34  E-value: 7.84e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 446747435    82 RVLRLSNFS-TSNGPDVRVVLVPTDRLkNNEDVKNHQYiELGKLKGNKGDQNYEI----PEGIDVSTYGSVSVWCKRFNE 156
Cdd:smart00686  17 KTLRIPNFSyDGSGPDAYFWVGAGSRP-DNEGGKKVPD-EYGYCNPLRRYHNEDIvlrlPESLTIDDIKWFSVWCLKTAH 94


                   ....*..
gi 446747435   157 NFGVAYF 163
Cdd:smart00686  95 NFGHVLF 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH