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Conserved domains on  [gi|446748389|ref|WP_000825645|]
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MULTISPECIES: membrane protein [Enterobacteriaceae]

Protein Classification

putative periplasmic lipoprotein( domain architecture ID 37384)

putative periplasmic lipoprotein such as the type IV secretion system putative lipoprotein virB7 is a DUF1425 domain-containing protein similar to Escherichia coli protein YcfL; its globular domain adopts an immunoglobulin-like fold; virB7 is part of the outer membrane core complex of a conjugative type IV secretion system

PubMed:  22987763|35732732

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1425 super family cl12345
Putative periplasmic lipoprotein; This bacterial family of proteins contains members described ...
 1-34 2.49e-04

Putative periplasmic lipoprotein; This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.


The actual alignment was detected with superfamily member COG5633:

Pssm-ID: 472303  Cd Length: 128  Bit Score: 36.51  E-value: 2.49e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 446748389   1 MKRLIPVALLTTLLAGCAHDSPC-VPVYDDQgRLV 34
Cdd:COG5633    1 MKKLLIALLAVLLLAGCSSSPTSgIPVNSQQ-PLV 34
 
Name Accession Description Interval E-value
YcfL COG5633
Uncharacterized conserved protein YcfL [Function unknown];
1-34 2.49e-04

Uncharacterized conserved protein YcfL [Function unknown];


Pssm-ID: 444360  Cd Length: 128  Bit Score: 36.51  E-value: 2.49e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 446748389   1 MKRLIPVALLTTLLAGCAHDSPC-VPVYDDQgRLV 34
Cdd:COG5633    1 MKKLLIALLAVLLLAGCSSSPTSgIPVNSQQ-PLV 34
 
Name Accession Description Interval E-value
YcfL COG5633
Uncharacterized conserved protein YcfL [Function unknown];
1-34 2.49e-04

Uncharacterized conserved protein YcfL [Function unknown];


Pssm-ID: 444360  Cd Length: 128  Bit Score: 36.51  E-value: 2.49e-04
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 446748389   1 MKRLIPVALLTTLLAGCAHDSPC-VPVYDDQgRLV 34
Cdd:COG5633    1 MKKLLIALLAVLLLAGCSSSPTSgIPVNSQQ-PLV 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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